Rmu_sc0011610.1_g000005

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011610.1
OG0000172
Physical Location & Seq
Forward (+)
24000 .. 26381
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011610.1_g000005.1.cds

Sequence Viewer

Length: 1170 bp
atggctgctattattgcctccatgactgccaggctagcgactaagttgtcactcagagagggtgaaggacaggtggatttggggaaccttagggttctggggaaggaatttcttgctcgccatttttacttggtggggagactcaacacttgtagggcggtggttttggattcgttccggagtgcggttagatgcatgtggagattgacggggacggggacggtgaaggtccaaccccggggtgaccgttttctgtttacgttcaccctcgtgagggttacgaggttgatgactcatccccttttcctgtcactcgttaaatttgaacttgtggaaatttgggtatcaacaacccttgaacgtgatcttgcgcgggtgaagaacggaggtctgtggggctttcaatgggctatgattttgttgaatgattatgatggattctcaaagactgctaaggtgaagcttgattctgtttggatctgggttgtacttgagggcatcccaccgggtatcttgactgaacctactgttaggttggtgggagggacaattagagaggttctagaggtggatcgcttggctcttcgttgtggggaagctcgaattcggcttgtcctctccatcaatgatccggtgcgcctagatcatagggttaaggtttcacccactgatatcctgacggtgcacttccggtatgagcggcttctgaggcgttgcaggctttgtgctctcttgaatcacgatgggcagcggtgtcctagggaggatgagtcggaaaccaatactgtggtggaggagggctcgcagcaggctcctgggtcggctctcccagcccttgtgtttagggctaactcccagccctctctttccttgcttttgacattcaaagtccctaacttgctgaagttggcgactttgccggggtttaagggcacgtcggcctctgttccagttgtgggggtacgtcgtcctagggaggaggagacttcggaggatgttaagagagctaaacatggtctagctcttgccccagccactttgcaaccggaaaatcttgggttggaattttcctctgatggtttggtggaggtggaggtgaaggtgacgtcacctcccaaggtctataagaagaaaggtaggcctcgaggacagatcgagaaacaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

389

Amino Acids

43.49

Weight (kDa)

9.75

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
AatII GACGTC 1 cut(s) 1109
AbsI CCTCGAGG 1 cut(s) 1143
AccBSI CCGCTC 1 cut(s) 700
AccII CGCG 1 cut(s) 373
AccIII TCCGGA 1 cut(s) 177
AciI CCGC 5 cut(s) 158, 185, 373, 700, 751
AclWI GGATC 3 cut(s) 485, 579, 623
AcsI RAATTY 5 cut(s) 107, 320, 336, 603, 1064
AcuI CTGAAG 1 cut(s) 923
AcyI GRCGYC 1 cut(s) 1106
AfaI GTAC 2 cut(s) 489, 963
AfiI CCNNNNNNNGG 5 cut(s) 184, 238, 273, 274, 956
AgsI TTSAA 6 cut(s) 326, 359, 404, 424, 736, 886
AjiI CACGTC 1 cut(s) 936
AjnI CCWGG 2 cut(s) 29, 814
AleI CACNNNNGTG 1 cut(s) 269
AluBI AGCT 4 cut(s) 463, 599, 1007, 1022
AluI AGCT 4 cut(s) 463, 599, 1007, 1022
Alw21I GWGCWC 2 cut(s) 687, 730
Alw26I GTCTC 2 cut(s) 133, 977
Alw44I GTGCAC 1 cut(s) 683
AlwI GGATC 3 cut(s) 485, 579, 623
Ama87I CYCGRG 2 cut(s) 237, 1143
Aor13HI TCCGGA 1 cut(s) 177
AoxI GGCC 2 cut(s) 939, 1139
ApaLI GTGCAC 1 cut(s) 683
ApeKI GCWGC 3 cut(s) 5, 748, 805
ApoI RAATTY 5 cut(s) 107, 320, 336, 603, 1064
AspA2I CCTAGG 2 cut(s) 758, 971
AspLEI GCGC 2 cut(s) 373, 639
AspS9I GGNCC 1 cut(s) 229
AsuC2I CCSGG 4 cut(s) 238, 239, 507, 921
AsuNHI GCTAGC 1 cut(s) 34
AvaI CYCGRG 2 cut(s) 237, 1143
AvaII GGWCC 1 cut(s) 229
AvrII CCTAGG 2 cut(s) 758, 971
AxyI CCTNAGG 1 cut(s) 89
BaeGI GKGCMC 2 cut(s) 687, 935
BanII GRGCYC 1 cut(s) 803
BauI CACGAG 1 cut(s) 269
Bbv12I GWGCWC 2 cut(s) 687, 730
BbvI GCAGC 2 cut(s) 760, 817
BccI CCATC 4 cut(s) 428, 629, 737, 1070
BciT130I CCWGG 2 cut(s) 31, 816
BcnI CCSGG 4 cut(s) 238, 239, 507, 921
BcoDI GTCTC 2 cut(s) 133, 977
BfaI CTAG 6 cut(s) 35, 563, 641, 759, 972, 1019
BisI GCNGC 4 cut(s) 6, 701, 749, 806
BlnI CCTAGG 2 cut(s) 758, 971
BlsI GCNGC 4 cut(s) 7, 702, 750, 807
Bme1390I CCNGG 6 cut(s) 31, 238, 239, 507, 816, 921
Bme18I GGWCC 1 cut(s) 229
BmeT110I CYCGRG 2 cut(s) 237, 1143
BmgBI CACGTC 1 cut(s) 936
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 2 cut(s) 86, 813
BmrFI CCNGG 6 cut(s) 31, 238, 239, 507, 816, 921
BmsI GCATC 2 cut(s) 182, 507
BmtI GCTAGC 1 cut(s) 38
BplI GAGNNNNNCTC 2 cut(s) 785, 817
Bpu10I CCTNAGC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 512
BpuMI CCSGG 4 cut(s) 238, 239, 507, 921
BsaHI GRCGYC 1 cut(s) 1106
BsaJI CCNNGG 8 cut(s) 236, 237, 238, 758, 815, 920, 971, 1116
BsaWI WCCGGW 4 cut(s) 177, 631, 690, 1045
BsaXI ACNNNNNCTCC 4 cut(s) 755, 785, 1096, 1126
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 238, 273, 274, 956
Bse1I ACTGG 1 cut(s) 950
Bse21I CCTNAGG 1 cut(s) 89
BseAI TCCGGA 1 cut(s) 177
BseBI CCWGG 2 cut(s) 31, 816
BseDI CCNNGG 8 cut(s) 236, 237, 238, 758, 815, 920, 971, 1116
BseGI GGATG 4 cut(s) 295, 498, 772, 1000
BseLI CCNNNNNNNGG 5 cut(s) 184, 238, 273, 274, 956
BseMII CTCAG 2 cut(s) 67, 698
BseNI ACTGG 1 cut(s) 950
BseRI GAGGAG 3 cut(s) 809, 992, 995
BseSI GKGCMC 2 cut(s) 687, 935
BseXI GCAGC 2 cut(s) 760, 817
BseYI CCCAGC 3 cut(s) 829, 855, 1030
Bsh1236I CGCG 1 cut(s) 373
BshFI GGCC 2 cut(s) 941, 1141
BsiHKAI GWGCWC 2 cut(s) 687, 730
BsiHKCI CYCGRG 2 cut(s) 237, 1143
BsiSI CCGG 7 cut(s) 178, 238, 506, 632, 691, 920, 1046
BslFI GGGAC 4 cut(s) 226, 232, 559, 875
BslI CCNNNNNNNGG 5 cut(s) 184, 238, 273, 274, 956
BsmAI GTCTC 2 cut(s) 133, 977
BsmFI GGGAC 4 cut(s) 226, 232, 559, 875
BsnI GGCC 2 cut(s) 941, 1141
BsoBI CYCGRG 2 cut(s) 237, 1143
Bsp1286I GDGCHC 4 cut(s) 687, 730, 803, 935
Bsp13I TCCGGA 1 cut(s) 177
Bsp143I GATC 6 cut(s) 364, 477, 571, 628, 643, 1152
BspACI CCGC 5 cut(s) 158, 185, 373, 700, 751
BspANI GGCC 2 cut(s) 941, 1141
BspCNI CTCAG 2 cut(s) 66, 699
BspEI TCCGGA 1 cut(s) 177
BspFNI CGCG 1 cut(s) 373
BspLI GGNNCC 2 cut(s) 86, 813
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 3 cut(s) 485, 579, 623
BspQI GCTCTTC 1 cut(s) 588
BsrBI CCGCTC 1 cut(s) 700
BsrI ACTGG 1 cut(s) 950
BssECI CCNNGG 8 cut(s) 236, 237, 238, 758, 815, 920, 971, 1116
BssMI GATC 6 cut(s) 364, 477, 571, 628, 643, 1152
BssNI GRCGYC 1 cut(s) 1106
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 3 cut(s) 758, 971, 1116
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 2 cut(s) 31, 816
Bst4CI ACNGT 5 cut(s) 223, 248, 529, 682, 787
Bst6I CTCTTC 1 cut(s) 588
BstACI GRCGYC 1 cut(s) 1106
BstC8I GCNNGC 5 cut(s) 36, 118, 719, 803, 810
BstDEI CTNAG 5 cut(s) 42, 53, 89, 453, 707
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 4 cut(s) 295, 498, 772, 1000
BstFNI CGCG 1 cut(s) 373
BstHHI GCGC 2 cut(s) 373, 639
BstKTI GATC 6 cut(s) 367, 480, 574, 631, 646, 1155
BstMAI GTCTC 2 cut(s) 133, 977
BstMBI GATC 6 cut(s) 364, 477, 571, 628, 643, 1152
BstMWI GCNNNNNNNGC 5 cut(s) 14, 35, 709, 718, 830
BstNI CCWGG 2 cut(s) 31, 816
BstNSI RCATGY 1 cut(s) 199
BstPI GGTNACC 1 cut(s) 242
BstSCI CCNGG 6 cut(s) 29, 236, 237, 505, 814, 919
BstSLI GKGCMC 2 cut(s) 687, 935
BstUI CGCG 1 cut(s) 373
BstV1I GCAGC 2 cut(s) 760, 817
BstX2I RGATCY 1 cut(s) 477
BstXI CCANNNNNNTGG 1 cut(s) 787
BstYI RGATCY 1 cut(s) 477
Bsu36I CCTNAGG 1 cut(s) 89
BsuRI GGCC 2 cut(s) 941, 1141
BtrI CACGTC 1 cut(s) 936
BtsCI GGATG 4 cut(s) 295, 498, 772, 1000
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 5 cut(s) 36, 118, 719, 803, 810
CfoI GCGC 2 cut(s) 373, 639
Cfr13I GGNCC 1 cut(s) 229
Cfr9I CCCGGG 1 cut(s) 237
Csp6I GTAC 2 cut(s) 488, 962
CviAII CATG 3 cut(s) 22, 196, 1013
CviQI GTAC 2 cut(s) 488, 962
DdeI CTNAG 5 cut(s) 42, 53, 89, 453, 707
DpnI GATC 6 cut(s) 366, 479, 573, 630, 645, 1154
DpnII GATC 6 cut(s) 364, 477, 571, 628, 643, 1152
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
Eco130I CCWWGG 3 cut(s) 758, 971, 1116
Eco147I AGGCCT 1 cut(s) 1141
Eco24I GRGCYC 1 cut(s) 803
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 923
Eco81I CCTNAGG 1 cut(s) 89
Eco88I CYCGRG 2 cut(s) 237, 1143
Eco91I GGTNACC 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 603
EcoRII CCWGG 2 cut(s) 29, 814
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 3 cut(s) 758, 971, 1116
EcoT22I ATGCAT 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 803
ErhI CCWWGG 3 cut(s) 758, 971, 1116
FaeI CATG 3 cut(s) 25, 199, 1016
FaiI YATR 8 cut(s) 23, 197, 413, 432, 648, 696, 1014, 1125
FaqI GGGAC 4 cut(s) 226, 232, 559, 875
FatI CATG 3 cut(s) 21, 195, 1012
FauI CCCGC 1 cut(s) 366
Fnu4HI GCNGC 4 cut(s) 6, 701, 749, 806
FokI GGATG 4 cut(s) 282, 485, 779, 1007
FriOI GRGCYC 1 cut(s) 803
Fsp4HI GCNGC 4 cut(s) 6, 701, 749, 806
FspBI CTAG 6 cut(s) 35, 563, 641, 759, 972, 1019
GlaI GCGC 2 cut(s) 372, 638
GluI GCNGC 4 cut(s) 6, 701, 749, 806
GsaI CCCAGC 3 cut(s) 833, 859, 1034
HaeIII GGCC 2 cut(s) 941, 1141
HapII CCGG 7 cut(s) 178, 238, 506, 632, 691, 920, 1046
HhaI GCGC 2 cut(s) 373, 639
Hin1I GRCGYC 1 cut(s) 1106
Hin1II CATG 3 cut(s) 25, 199, 1016
Hin6I GCGC 2 cut(s) 371, 637
HinP1I GCGC 2 cut(s) 371, 637
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 7 cut(s) 141, 170, 292, 438, 467, 736, 770
HpaII CCGG 7 cut(s) 178, 238, 506, 632, 691, 920, 1046
Hpy166II GTNNAC 3 cut(s) 258, 264, 685
Hpy188I TCNGA 5 cut(s) 56, 708, 775, 991, 1075
Hpy188III TCNNGA 8 cut(s) 178, 271, 514, 563, 676, 733, 740, 1156
Hpy8I GTNNAC 3 cut(s) 258, 264, 685
Hpy99I CGWCG 2 cut(s) 940, 969
HpyAV CCTTC 4 cut(s) 59, 97, 220, 1093
HpyCH4III ACNGT 5 cut(s) 223, 248, 529, 682, 787
HpyCH4IV ACGT 5 cut(s) 260, 361, 935, 964, 1106
HpyCH4V TGCA 4 cut(s) 195, 685, 717, 1042
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 35, 709, 718, 830
HpyF3I CTNAG 5 cut(s) 42, 53, 89, 453, 707
HpySE526I ACGT 5 cut(s) 260, 361, 935, 964, 1106
Hsp92I GRCGYC 1 cut(s) 1106
Hsp92II CATG 3 cut(s) 25, 199, 1016
HspAI GCGC 2 cut(s) 371, 637
Kpn2I TCCGGA 1 cut(s) 177
Kzo9I GATC 6 cut(s) 364, 477, 571, 628, 643, 1152
LguI GCTCTTC 1 cut(s) 588
LmnI GCTCC 1 cut(s) 817
Lsp1109I GCAGC 2 cut(s) 760, 817
LweI GCATC 2 cut(s) 182, 507
MaeI CTAG 6 cut(s) 35, 563, 641, 759, 972, 1019
MaeII ACGT 5 cut(s) 260, 361, 935, 964, 1106
MaeIII GTNAC 6 cut(s) 48, 242, 277, 309, 1102, 1107
MalI GATC 6 cut(s) 366, 479, 573, 630, 645, 1154
MbiI CCGCTC 1 cut(s) 700
MboI GATC 6 cut(s) 364, 477, 571, 628, 643, 1152
MboII GAAGA 3 cut(s) 391, 575, 1141
MflI RGATCY 1 cut(s) 477
MhlI GDGCHC 4 cut(s) 687, 730, 803, 935
MluCI AATT 6 cut(s) 107, 320, 336, 549, 603, 1064
MlyI GAGTC 3 cut(s) 135, 286, 779
MmeI TCCRAC 3 cut(s) 256, 753, 1041
Mph1103I ATGCAT 1 cut(s) 197
MroI TCCGGA 1 cut(s) 177
MseI TTAA 5 cut(s) 318, 654, 927, 999, 1168
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 751
MspI CCGG 7 cut(s) 178, 238, 506, 632, 691, 920, 1046
MspR9I CCNGG 6 cut(s) 31, 238, 239, 507, 816, 921
MvaI CCWGG 2 cut(s) 31, 816
MvnI CGCG 1 cut(s) 373
MwoI GCNNNNNNNGC 5 cut(s) 14, 35, 709, 718, 830
NciI CCSGG 4 cut(s) 238, 239, 507, 921
NdeII GATC 6 cut(s) 364, 477, 571, 628, 643, 1152
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 3 cut(s) 25, 199, 1016
NlaIV GGNNCC 2 cut(s) 86, 813
NmuCI GTSAC 5 cut(s) 48, 242, 309, 1102, 1107
NsiI ATGCAT 1 cut(s) 197
NspI RCATGY 1 cut(s) 199
OliI CACNNNNGTG 1 cut(s) 269
PaeR7I CTCGAG 1 cut(s) 1143
PceI AGGCCT 1 cut(s) 1141
PciSI GCTCTTC 1 cut(s) 588
PfeI GAWTC 4 cut(s) 170, 438, 467, 736
PkrI GCNGC 4 cut(s) 7, 702, 750, 807
PleI GAGTC 3 cut(s) 135, 286, 778
PpsI GAGTC 3 cut(s) 135, 286, 778
Psp6I CCWGG 2 cut(s) 29, 814
PspEI GGTNACC 1 cut(s) 242
PspFI CCCAGC 3 cut(s) 829, 855, 1030
PspGI CCWGG 2 cut(s) 29, 814
PspN4I GGNNCC 2 cut(s) 86, 813
PspPI GGNCC 1 cut(s) 229
PspXI VCTCGAGB 1 cut(s) 1143
PsuI RGATCY 1 cut(s) 477
RsaI GTAC 2 cut(s) 489, 963
RsaNI GTAC 2 cut(s) 488, 962
RseI CAYNNNNRTG 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 588
SaqAI TTAA 5 cut(s) 318, 654, 927, 999, 1168
SatI GCNGC 4 cut(s) 6, 701, 749, 806
Sau3AI GATC 6 cut(s) 364, 477, 571, 628, 643, 1152
Sau96I GGNCC 1 cut(s) 229
SchI GAGTC 3 cut(s) 135, 286, 779
ScrFI CCNGG 6 cut(s) 31, 238, 239, 507, 816, 921
SduI GDGCHC 4 cut(s) 687, 730, 803, 935
SfaNI GCATC 2 cut(s) 182, 507
Sfr274I CTCGAG 1 cut(s) 1143
SinI GGWCC 1 cut(s) 229
SlaI CTCGAG 1 cut(s) 1143
SmaI CCCGGG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 2 cut(s) 491, 1143
SmoI CTYRAG 2 cut(s) 491, 1143
Sse9I AATT 6 cut(s) 107, 320, 336, 549, 603, 1064
SseBI AGGCCT 1 cut(s) 1141
SsiI CCGC 5 cut(s) 158, 185, 373, 700, 751
SspMI CTAG 6 cut(s) 35, 563, 641, 759, 972, 1019
StuI AGGCCT 1 cut(s) 1141
StyD4I CCNGG 6 cut(s) 29, 236, 237, 505, 814, 919
StyI CCWWGG 3 cut(s) 758, 971, 1116
TaaI ACNGT 5 cut(s) 223, 248, 529, 682, 787
TaiI ACGT 5 cut(s) 263, 364, 938, 967, 1109
TaqI TCGA 3 cut(s) 601, 1144, 1155
TasI AATT 6 cut(s) 107, 320, 336, 549, 603, 1064
TatI WGTACW 1 cut(s) 487
TauI GCSGC 1 cut(s) 703
TfiI GAWTC 4 cut(s) 170, 438, 467, 736
Tru1I TTAA 5 cut(s) 318, 654, 927, 999, 1168
Tru9I TTAA 5 cut(s) 318, 654, 927, 999, 1168
TscAI CASTG 1 cut(s) 673
TseFI GTSAC 5 cut(s) 48, 242, 309, 1102, 1107
TseI GCWGC 3 cut(s) 5, 748, 805
Tsp45I GTSAC 5 cut(s) 48, 242, 309, 1102, 1107
TspGWI ACGGA 1 cut(s) 399
TspMI CCCGGG 1 cut(s) 237
TspRI CASTG 1 cut(s) 673
VneI GTGCAC 1 cut(s) 683
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 5 cut(s) 107, 320, 336, 603, 1064
XbaI TCTAGA 1 cut(s) 562
XceI RCATGY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 787
XhoI CTCGAG 1 cut(s) 1143
XmaI CCCGGG 1 cut(s) 237
XmaJI CCTAGG 2 cut(s) 758, 971
XspI CTAG 6 cut(s) 35, 563, 641, 759, 972, 1019
ZraI GACGTC 1 cut(s) 1107
Zsp2I ATGCAT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.