FvH4_6g23960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000172
Physical Location & Seq
Reverse (-)
18008837 .. 18010750
1914 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23960.t1

Sequence Viewer

Length: 852 bp
ATGGAAGCTGATCCAGTGCAGGTTCCTCCGCCAACAACGCCGCCGATGGTGTTTAGGGTCGTTGTGTCCAACCAAACCACCTTCTTTGTTCCGGTGGTGGCTCTACCTAAGGAGAAGAGAGTGATATCAATCAGGGATGTTCCTGATTTTCCATCACCTACCAAGATAACTGGGATGGGTTTTTCTGTGTCTGATGTAAGGGTTCTTGGAATCAAGAGAACTAGAAATCCCCTCAGAAGAGAGGACGTCCTCGTGGCAGTCGAAACAAGAAGACTCTGTTGCTTGGTAAAGCTTCTATTGGTTCAGATTCAATGGCCCCTAGTTCGTCAGGTTCTGGGAGGATCAATGGTGGTAGCCTCGGCTTCGAGGCTGAGGAGGAGTAGTATTCCTAGTGAGACTAGGAAAGACCCCTTTCAAACCCTAGCGACTACTCTCTCTCTTCTCATCGATGAAAGCGGTCGAGGCTTAAAAGCTGGTATGATGGTGGTGGAGGCTAGGTGGTGGTACGATGGTGGGCTTATTTGTAGGGGTTTGGATTTACTCCTCCTAGATACGGCAACACTTTCGTCCACTTATCCAATTCGTGCAATATTCCTATCTGATTTTAGTCTCCTTCTCGACCGTCTCAAATGTCATCTCCCCTGCCGCCTCGGGTTGGCGTTGACCTTCTTACGACCCACCTTCCTTATTCATTGCATATCTAGCTGTTCAAAGCTAAGGTCCCTCTTTCGGTTGCTCATCGCCGACAACGATGGGAGGAAGCACTTCACATGGGTTGCTATCGGGTTAACTGTGTTTAGGCTTCTCCGTGATACAAGCTCCAATTTTAGGCTGCTTTGTTTGGTCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

31.73

Weight (kDa)

10.16

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 10
AciI CCGC 4 cut(s) 29, 41, 456, 646
AclWI GGATC 2 cut(s) 5, 349
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 4 cut(s) 553, 655, 729, 828
AgsI TTSAA 3 cut(s) 311, 416, 711
AloI GAACNNNNNNTCC 2 cut(s) 211, 243
AluBI AGCT 6 cut(s) 8, 292, 473, 705, 715, 819
AluI AGCT 6 cut(s) 8, 292, 473, 705, 715, 819
Alw26I GTCTC 3 cut(s) 389, 614, 629
AlwI GGATC 2 cut(s) 5, 349
AlwNI CAGNNNCTG 1 cut(s) 334
Ama87I CYCGRG 1 cut(s) 650
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 832
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
Asp700I GAANNNNTTC 1 cut(s) 764
AspS9I GGNCC 2 cut(s) 315, 720
AsuHPI GGTGA 1 cut(s) 147
AvaI CYCGRG 1 cut(s) 650
AvaII GGWCC 1 cut(s) 720
AxyI CCTNAGG 1 cut(s) 108
BaeI ACNNNNGTAYC 2 cut(s) 496, 529
BauI CACGAG 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 277
BbvCI CCTCAGC 1 cut(s) 371
BbvI GCAGC 1 cut(s) 819
BccI CCATC 6 cut(s) 40, 160, 169, 475, 503, 746
BceAI ACGGC 1 cut(s) 570
BcgI CGANNNNNNTGC 2 cut(s) 546, 580
BcoDI GTCTC 3 cut(s) 389, 614, 629
BfaI CTAG 9 cut(s) 222, 320, 390, 399, 422, 495, 548, 702, 850
BfuAI ACCTGC 1 cut(s) 10
BisI GCNGC 3 cut(s) 41, 646, 833
BlsI GCNGC 3 cut(s) 42, 647, 834
Bme18I GGWCC 1 cut(s) 720
BmeT110I CYCGRG 1 cut(s) 650
BmgT120I GGNCC 2 cut(s) 315, 720
BmiI GGNNCC 3 cut(s) 24, 317, 722
BmrI ACTGGG 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 277
Bpu10I CCTNAGC 2 cut(s) 371, 716
Bsa29I ATCGAT 1 cut(s) 447
BsaBI GATNNNNATC 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 357, 649
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 4 cut(s) 367, 397, 482, 512
Bsc4I CCNNNNNNNGG 4 cut(s) 553, 655, 729, 828
Bse1I ACTGG 2 cut(s) 14, 175
Bse21I CCTNAGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 691
Bse8I GATNNNNATC 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 447
BseDI CCNNGG 2 cut(s) 357, 649
BseGI GGATG 2 cut(s) 142, 180
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 4 cut(s) 553, 655, 729, 828
BseMI GCAATG 1 cut(s) 691
BseMII CTCAG 2 cut(s) 247, 362
BseNI ACTGG 2 cut(s) 14, 175
BseRI GAGGAG 3 cut(s) 388, 391, 533
BseXI GCAGC 1 cut(s) 819
BsgI GTGCAG 1 cut(s) 38
Bsh1285I CGRYCG 2 cut(s) 460, 622
BshFI GGCC 1 cut(s) 316
BshVI ATCGAT 1 cut(s) 447
BsiEI CGRYCG 2 cut(s) 460, 622
BsiHKCI CYCGRG 1 cut(s) 650
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 706
BslI CCNNNNNNNGG 4 cut(s) 553, 655, 729, 828
BsmAI GTCTC 3 cut(s) 389, 614, 629
BsmBI CGTCTC 1 cut(s) 629
BsmFI GGGAC 1 cut(s) 706
BsnI GGCC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 650
Bsp143I GATC 2 cut(s) 10, 341
BspACI CCGC 4 cut(s) 29, 41, 456, 646
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 2 cut(s) 246, 363
BspDI ATCGAT 1 cut(s) 447
BspLI GGNNCC 3 cut(s) 24, 317, 722
BspMI ACCTGC 1 cut(s) 10
BspPI GGATC 2 cut(s) 5, 349
BsrDI GCAATG 1 cut(s) 691
BsrI ACTGG 2 cut(s) 14, 175
BssECI CCNNGG 2 cut(s) 357, 649
BssMI GATC 2 cut(s) 10, 341
BssNI GRCGYC 1 cut(s) 246
BssSI CACGAG 1 cut(s) 251
Bst2BI CACGAG 1 cut(s) 251
Bst4CI ACNGT 2 cut(s) 623, 793
Bst6I CTCTTC 3 cut(s) 110, 232, 444
BstACI GRCGYC 1 cut(s) 246
BstDEI CTNAG 4 cut(s) 108, 233, 371, 716
BstF5I GGATG 2 cut(s) 142, 180
BstKTI GATC 2 cut(s) 13, 344
BstMAI GTCTC 3 cut(s) 389, 614, 629
BstMBI GATC 2 cut(s) 10, 341
BstMCI CGRYCG 2 cut(s) 460, 622
BstMWI GCNNNNNNNGC 3 cut(s) 37, 462, 702
BstV1I GCAGC 1 cut(s) 819
BstV2I GAAGAC 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 447
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 316
BsuTUI ATCGAT 1 cut(s) 447
BtgZI GCGATG 1 cut(s) 724
BtsCI GGATG 2 cut(s) 142, 180
BtsIMutI CAGTG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 315, 720
ClaI ATCGAT 1 cut(s) 447
Csp6I GTAC 1 cut(s) 505
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 1 cut(s) 771
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 4 cut(s) 108, 233, 371, 716
DpnI GATC 2 cut(s) 12, 343
DpnII GATC 2 cut(s) 10, 341
Eam1104I CTCTTC 3 cut(s) 110, 232, 444
EarI CTCTTC 3 cut(s) 110, 232, 444
EciI GGCGGA 1 cut(s) 18
Eco32I GATATC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 720
Eco81I CCTNAGG 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 650
EcoO109I RGGNCCY 1 cut(s) 720
EcoRV GATATC 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 629
FaeI CATG 1 cut(s) 774
FaiI YATR 3 cut(s) 479, 698, 772
FaqI GGGAC 1 cut(s) 706
FatI CATG 1 cut(s) 770
Fnu4HI GCNGC 3 cut(s) 41, 646, 833
FokI GGATG 2 cut(s) 149, 187
Fsp4HI GCNGC 3 cut(s) 41, 646, 833
FspBI CTAG 9 cut(s) 222, 320, 390, 399, 422, 495, 548, 702, 850
GluI GCNGC 3 cut(s) 41, 646, 833
HaeIII GGCC 1 cut(s) 316
HapII CCGG 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 1 cut(s) 774
HincII GTYRAC 2 cut(s) 663, 789
HindII GTYRAC 2 cut(s) 663, 789
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 3 cut(s) 210, 273, 307
HpaI GTTAAC 1 cut(s) 789
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 147
Hpy166II GTNNAC 3 cut(s) 570, 663, 789
Hpy188I TCNGA 4 cut(s) 193, 236, 306, 601
Hpy188III TCNNGA 3 cut(s) 143, 214, 617
Hpy8I GTNNAC 3 cut(s) 570, 663, 789
HpyAV CCTTC 4 cut(s) 91, 623, 676, 691
HpyCH4III ACNGT 2 cut(s) 623, 793
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 3 cut(s) 19, 587, 696
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 462, 702
HpyF3I CTNAG 4 cut(s) 108, 233, 371, 716
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 1 cut(s) 774
KspAI GTTAAC 1 cut(s) 789
Kzo9I GATC 2 cut(s) 10, 341
LmnI GCTCC 1 cut(s) 824
Lsp1109I GCAGC 1 cut(s) 819
MaeI CTAG 9 cut(s) 222, 320, 390, 399, 422, 495, 548, 702, 850
MaeII ACGT 1 cut(s) 246
MalI GATC 2 cut(s) 12, 343
MboI GATC 2 cut(s) 10, 341
MboII GAAGA 4 cut(s) 127, 249, 282, 431
MluCI AATT 2 cut(s) 579, 823
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 764
MseI TTAA 2 cut(s) 467, 788
MspI CCGG 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 37, 462, 702
NdeII GATC 2 cut(s) 10, 341
NlaIII CATG 1 cut(s) 774
NlaIV GGNNCC 3 cut(s) 24, 317, 722
NmeAIII GCCGAG 1 cut(s) 338
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 747
PdmI GAANNNNTTC 1 cut(s) 764
PfeI GAWTC 2 cut(s) 210, 307
PkrI GCNGC 3 cut(s) 42, 647, 834
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PpuMI RGGWCCY 1 cut(s) 720
Psp5II RGGWCCY 1 cut(s) 720
PspN4I GGNNCC 3 cut(s) 24, 317, 722
PspPI GGNCC 2 cut(s) 315, 720
PspPPI RGGWCCY 1 cut(s) 720
PstNI CAGNNNCTG 1 cut(s) 334
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
SaqAI TTAA 2 cut(s) 467, 788
SatI GCNGC 3 cut(s) 41, 646, 833
Sau3AI GATC 2 cut(s) 10, 341
Sau96I GGNCC 2 cut(s) 315, 720
SchI GAGTC 1 cut(s) 267
SinI GGWCC 1 cut(s) 720
Sse9I AATT 2 cut(s) 579, 823
SsiI CCGC 4 cut(s) 29, 41, 456, 646
SspI AATATT 1 cut(s) 591
SspMI CTAG 9 cut(s) 222, 320, 390, 399, 422, 495, 548, 702, 850
TaaI ACNGT 2 cut(s) 623, 793
TaiI ACGT 1 cut(s) 249
TaqI TCGA 5 cut(s) 261, 365, 447, 460, 618
TasI AATT 2 cut(s) 579, 823
TauI GCSGC 2 cut(s) 43, 648
TfiI GAWTC 2 cut(s) 210, 307
Tru1I TTAA 2 cut(s) 467, 788
Tru9I TTAA 2 cut(s) 467, 788
TscAI CASTG 1 cut(s) 21
TseI GCWGC 1 cut(s) 832
TspDTI ATGAA 2 cut(s) 465, 680
TspGWI ACGGA 1 cut(s) 797
TspRI CASTG 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 720
XmnI GAANNNNTTC 1 cut(s) 764
XspI CTAG 9 cut(s) 222, 320, 390, 399, 422, 495, 548, 702, 850
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.