Rmu_sc0002060.1_g000017

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002060.1
Physical Location & Seq
Forward (+)
66497 .. 67731
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002060.1_g000017.1.cds

Sequence Viewer

Length: 759 bp
atggccgctgctattgcttccatgacttctaaacttgcgacaaggctatcgcttaaggacggcgaagagccagtagatctaggcaacattcagatttcgggaaaagaatttttggctaggaacttttacctagttgggcgactgaacagcagtcgtgcggtggctatggatttgtttcacagcgctattagatccatgtggaggctaacagggacggtggaggggcaaccccgtgtagaccgttttttgtttacgttcactcatgaacgtgacattgctagagtaaagaagggaggaccatggggtttccagcgtgccatggtgcttctcaacgactatgaccgattttcggatatctctgccgtcaagctagactttgtgtggatttggatggaggtgcaaggtctgcctccgagcatcttgaaggaaccaatcgttaaattggttggagaaaccattggtgaggtgctacaggccttaccggagggagtggaagcgcccatcttggagggtacctctgccaacccccaacttgctggtgtgcagtgtcaaagggaagaagagccaccgactgacgccccaaaggtgtacaagaagaaaggaaggccctgtgggaagagaaatactctgaagccttccctggcgggctctgtttgtgttggctctgagtcaggaatgtcagttgcttctgagggaggatctggaggtctacagatggtggtggccttggagatggaatcccttccccgttctggttag

Protein Analysis

252

Amino Acids

27.38

Weight (kDa)

7.69

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 512
AccB1I GGYRCC 1 cut(s) 512
AccI GTMKAC 2 cut(s) 237, 709
AciI CCGC 3 cut(s) 6, 158, 644
AclWI GGATC 2 cut(s) 186, 706
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 650
AcyI GRCGYC 1 cut(s) 576
AfaI GTAC 2 cut(s) 514, 590
AfeI AGCGCT 1 cut(s) 184
AfiI CCNNNNNNNGG 3 cut(s) 201, 349, 752
AflII CTTAAG 1 cut(s) 53
AgsI TTSAA 1 cut(s) 424
AjnI CCWGG 1 cut(s) 639
AluBI AGCT 1 cut(s) 370
AluI AGCT 1 cut(s) 370
AlwI GGATC 2 cut(s) 186, 706
Aor51HI AGCGCT 1 cut(s) 184
AoxI GGCC 4 cut(s) 3, 474, 605, 723
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 741
Asp718I GGTACC 1 cut(s) 512
AspLEI GCGC 2 cut(s) 185, 499
AspS9I GGNCC 2 cut(s) 296, 606
AsuHPI GGTGA 1 cut(s) 473
AvaII GGWCC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 512
BanII GRGCYC 1 cut(s) 650
BccI CCATC 4 cut(s) 385, 509, 709, 727
BceAI ACGGC 2 cut(s) 76, 347
BciT130I CCWGG 1 cut(s) 641
BfaI CTAG 5 cut(s) 80, 117, 131, 279, 371
BfmI CTRYAG 2 cut(s) 470, 710
BfoI RGCGCY 2 cut(s) 186, 500
BfrI CTTAAG 1 cut(s) 53
BglII AGATCT 1 cut(s) 76
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
Bme1390I CCNGG 1 cut(s) 641
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 2 cut(s) 296, 606
BmiI GGNNCC 2 cut(s) 429, 514
BmrFI CCNGG 1 cut(s) 641
BmsI GCATC 1 cut(s) 426
BplI GAGNNNNNCTC 4 cut(s) 500, 532, 610, 642
BpmI CTGGAG 1 cut(s) 723
BsaHI GRCGYC 1 cut(s) 576
BsaJI CCNNGG 4 cut(s) 299, 318, 639, 726
BsaWI WCCGGW 1 cut(s) 481
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 349, 752
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 4 cut(s) 299, 318, 639, 726
BseGI GGATG 1 cut(s) 396
BseLI CCNNNNNNNGG 3 cut(s) 201, 349, 752
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 2 cut(s) 657, 681
BseNI ACTGG 1 cut(s) 71
BsgI GTGCAG 1 cut(s) 563
BshFI GGCC 4 cut(s) 5, 476, 607, 725
BshNI GGYRCC 1 cut(s) 512
BsiSI CCGG 1 cut(s) 482
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 3 cut(s) 201, 349, 752
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 4 cut(s) 5, 476, 607, 725
Bsp1286I GDGCHC 1 cut(s) 650
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 3 cut(s) 76, 191, 698
Bsp19I CCATGG 2 cut(s) 299, 318
BspACI CCGC 3 cut(s) 6, 158, 644
BspANI GGCC 4 cut(s) 5, 476, 607, 725
BspCNI CTCAG 2 cut(s) 658, 682
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 429, 514
BspPI GGATC 2 cut(s) 186, 706
BspQI GCTCTTC 2 cut(s) 60, 555
BspT107I GGYRCC 1 cut(s) 512
BspTI CTTAAG 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 273
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 299, 318, 639, 726
BssMI GATC 3 cut(s) 76, 191, 698
BssNI GRCGYC 1 cut(s) 576
BssT1I CCWWGG 3 cut(s) 299, 318, 726
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 2 cut(s) 217, 242
Bst6I CTCTTC 3 cut(s) 60, 555, 611
BstACI GRCGYC 1 cut(s) 576
BstAFI CTTAAG 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 406
BstAUI TGTACA 1 cut(s) 588
BstC8I GCNNGC 2 cut(s) 315, 646
BstDEI CTNAG 2 cut(s) 666, 690
BstDSI CCRYGG 2 cut(s) 299, 318
BstF5I GGATG 1 cut(s) 396
BstH2I RGCGCY 2 cut(s) 186, 500
BstHHI GCGC 2 cut(s) 185, 499
BstKTI GATC 3 cut(s) 79, 194, 701
BstMBI GATC 3 cut(s) 76, 191, 698
BstMWI GCNNNNNNNGC 2 cut(s) 14, 406
BstNI CCWGG 1 cut(s) 641
BstSCI CCNGG 1 cut(s) 639
BstSFI CTRYAG 2 cut(s) 470, 710
BstX2I RGATCY 3 cut(s) 76, 191, 698
BstXI CCANNNNNNTGG 1 cut(s) 536
BstYI RGATCY 3 cut(s) 76, 191, 698
BsuRI GGCC 4 cut(s) 5, 476, 607, 725
BtgI CCRYGG 2 cut(s) 299, 318
BtsCI GGATG 1 cut(s) 396
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 1 cut(s) 551
Cac8I GCNNGC 2 cut(s) 315, 646
CciI TCATGA 1 cut(s) 262
CfoI GCGC 2 cut(s) 185, 499
Cfr13I GGNCC 2 cut(s) 296, 606
CseI GACGC 1 cut(s) 584
Csp6I GTAC 2 cut(s) 513, 589
CviAII CATG 5 cut(s) 22, 196, 263, 300, 319
CviQI GTAC 2 cut(s) 513, 589
DdeI CTNAG 2 cut(s) 666, 690
DpnI GATC 3 cut(s) 78, 193, 700
DpnII GATC 3 cut(s) 76, 191, 698
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 60, 555, 611
EarI CTCTTC 3 cut(s) 60, 555, 611
Eco130I CCWWGG 3 cut(s) 299, 318, 726
Eco147I AGGCCT 1 cut(s) 476
Eco24I GRGCYC 1 cut(s) 650
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 296
Eco47III AGCGCT 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 650
EcoO109I RGGNCCY 1 cut(s) 606
EcoRII CCWGG 1 cut(s) 639
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 3 cut(s) 299, 318, 726
EcoT38I GRGCYC 1 cut(s) 650
ErhI CCWWGG 3 cut(s) 299, 318, 726
FaeI CATG 5 cut(s) 25, 199, 266, 303, 322
FaiI YATR 7 cut(s) 23, 167, 197, 264, 301, 320, 339
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 1 cut(s) 226
FatI CATG 5 cut(s) 21, 195, 262, 299, 318
FauI CCCGC 1 cut(s) 637
FblI GTMKAC 2 cut(s) 237, 709
Fnu4HI GCNGC 2 cut(s) 6, 9
FokI GGATG 1 cut(s) 403
FriOI GRGCYC 1 cut(s) 650
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 5 cut(s) 80, 117, 131, 279, 371
GlaI GCGC 2 cut(s) 184, 498
GluI GCNGC 2 cut(s) 6, 9
GsuI CTGGAG 1 cut(s) 723
HaeII RGCGCY 2 cut(s) 186, 500
HaeIII GGCC 4 cut(s) 5, 476, 607, 725
HapII CCGG 1 cut(s) 482
HgaI GACGC 1 cut(s) 584
HhaI GCGC 2 cut(s) 185, 499
Hin1I GRCGYC 1 cut(s) 576
Hin1II CATG 5 cut(s) 25, 199, 266, 303, 322
Hin6I GCGC 2 cut(s) 183, 497
HinP1I GCGC 2 cut(s) 183, 497
HinfI GANTC 2 cut(s) 668, 737
HpaII CCGG 1 cut(s) 482
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 5 cut(s) 238, 252, 258, 589, 710
Hpy188I TCNGA 6 cut(s) 93, 352, 414, 630, 667, 691
Hpy188III TCNNGA 5 cut(s) 99, 263, 421, 672, 702
Hpy8I GTNNAC 5 cut(s) 238, 252, 258, 589, 710
HpyAV CCTTC 5 cut(s) 283, 418, 597, 645, 752
HpyCH4III ACNGT 2 cut(s) 217, 242
HpyCH4IV ACGT 2 cut(s) 254, 268
HpyCH4V TGCA 2 cut(s) 400, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 406
HpyF3I CTNAG 2 cut(s) 666, 690
HpySE526I ACGT 2 cut(s) 254, 268
Hsp92I GRCGYC 1 cut(s) 576
Hsp92II CATG 5 cut(s) 25, 199, 266, 303, 322
HspAI GCGC 2 cut(s) 183, 497
KpnI GGTACC 1 cut(s) 516
Kzo9I GATC 3 cut(s) 76, 191, 698
LguI GCTCTTC 2 cut(s) 60, 555
LweI GCATC 1 cut(s) 426
MaeI CTAG 5 cut(s) 80, 117, 131, 279, 371
MaeII ACGT 2 cut(s) 254, 268
MaeIII GTNAC 1 cut(s) 269
MalI GATC 3 cut(s) 78, 193, 700
MboI GATC 3 cut(s) 76, 191, 698
MboII GAAGA 5 cut(s) 77, 569, 572, 607, 628
MflI RGATCY 3 cut(s) 76, 191, 698
MhlI GDGCHC 1 cut(s) 650
MluCI AATT 2 cut(s) 107, 440
MlyI GAGTC 1 cut(s) 677
MmeI TCCRAC 1 cut(s) 427
MroXI GAANNNNTTC 1 cut(s) 741
MseI TTAA 2 cut(s) 54, 438
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 8
MspCI CTTAAG 1 cut(s) 53
MspI CCGG 1 cut(s) 482
MspR9I CCNGG 1 cut(s) 641
MvaI CCWGG 1 cut(s) 641
MwoI GCNNNNNNNGC 2 cut(s) 14, 406
NcoI CCATGG 2 cut(s) 299, 318
NdeII GATC 3 cut(s) 76, 191, 698
NlaIII CATG 5 cut(s) 25, 199, 266, 303, 322
NlaIV GGNNCC 2 cut(s) 429, 514
NmuCI GTSAC 1 cut(s) 269
PagI TCATGA 1 cut(s) 262
PceI AGGCCT 1 cut(s) 476
PciSI GCTCTTC 2 cut(s) 60, 555
PdmI GAANNNNTTC 1 cut(s) 741
PfeI GAWTC 1 cut(s) 737
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 1 cut(s) 676
PpsI GAGTC 1 cut(s) 676
Psp6I CCWGG 1 cut(s) 639
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 2 cut(s) 429, 514
PspPI GGNCC 2 cut(s) 296, 606
PsuI RGATCY 3 cut(s) 76, 191, 698
RsaI GTAC 2 cut(s) 514, 590
RsaNI GTAC 2 cut(s) 513, 589
RseI CAYNNNNRTG 1 cut(s) 267
SapI GCTCTTC 2 cut(s) 60, 555
SaqAI TTAA 2 cut(s) 54, 438
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 3 cut(s) 76, 191, 698
Sau96I GGNCC 2 cut(s) 296, 606
SchI GAGTC 1 cut(s) 677
ScrFI CCNGG 1 cut(s) 641
SduI GDGCHC 1 cut(s) 650
SfaNI GCATC 1 cut(s) 426
SfcI CTRYAG 2 cut(s) 470, 710
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 2 cut(s) 107, 440
SseBI AGGCCT 1 cut(s) 476
SsiI CCGC 3 cut(s) 6, 158, 644
SspMI CTAG 5 cut(s) 80, 117, 131, 279, 371
StuI AGGCCT 1 cut(s) 476
StyD4I CCNGG 1 cut(s) 639
StyI CCWWGG 3 cut(s) 299, 318, 726
TaaI ACNGT 2 cut(s) 217, 242
TaiI ACGT 2 cut(s) 257, 271
TaqII GACCGA 1 cut(s) 357
TasI AATT 2 cut(s) 107, 440
TatI WGTACW 1 cut(s) 588
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 737
Tru1I TTAA 2 cut(s) 54, 438
Tru9I TTAA 2 cut(s) 54, 438
TscAI CASTG 1 cut(s) 551
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 1 cut(s) 551
Vha464I CTTAAG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 1 cut(s) 107
XmiI GTMKAC 2 cut(s) 237, 709
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 5 cut(s) 80, 117, 131, 279, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.