FvH4_5g02661

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
1599888 .. 1600103
216 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02661.t1

Sequence Viewer

Length: 216 bp
ATGGTGCCACTGGACCTAAACCTAGAAGATCTTGGTTTCTCCATGGCTGTGAGTGGGGAGCTAGGGATAAAGAAGACGGGGAAATCCCCGAAGAAGAGAGGCATGCAAAGAGGAAGCAAGAACAAGAAGCAGTTATTTACTGGTGAGTCGTCGAGCTCCATGGCAAACTCTGTCATACATGAGCCTCTTTCTAATGAAGAAACCCGTGGCGAGTAG

Protein Analysis

72

Amino Acids

7.69

Weight (kDa)

9.16

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AluBI AGCT 2 cut(s) 61, 156
AluI AGCT 2 cut(s) 61, 156
Alw21I GWGCWC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 158
BfaI CTAG 2 cut(s) 23, 62
BglII AGATCT 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 42, 159, 205
Bse1I ACTGG 2 cut(s) 15, 145
BseDI CCNNGG 3 cut(s) 42, 159, 205
BseNI ACTGG 2 cut(s) 15, 145
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 28
Bsp19I CCATGG 2 cut(s) 42, 159
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 2 cut(s) 15, 145
BssECI CCNNGG 3 cut(s) 42, 159, 205
BssMI GATC 1 cut(s) 28
BssT1I CCWWGG 2 cut(s) 42, 159
Bst6I CTCTTC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 104
BstDSI CCRYGG 3 cut(s) 42, 159, 205
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstNSI RCATGY 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtgI CCRYGG 3 cut(s) 42, 159, 205
BtsIMutI CAGTG 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 13
CviAII CATG 4 cut(s) 43, 103, 160, 179
CviJI RGCY 4 cut(s) 47, 61, 156, 184
CviKI_1 RGCY 4 cut(s) 47, 61, 156, 184
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Ecl136II GAGCTC 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 42, 159
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 156
EcoT14I CCWWGG 2 cut(s) 42, 159
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 2 cut(s) 42, 159
FaeI CATG 4 cut(s) 46, 106, 163, 182
FaiI YATR 5 cut(s) 44, 104, 161, 176, 180
FatI CATG 4 cut(s) 42, 102, 159, 178
FriOI GRGCYC 1 cut(s) 158
FspBI CTAG 2 cut(s) 23, 62
Hin1II CATG 4 cut(s) 46, 106, 163, 182
HinfI GANTC 1 cut(s) 146
HphI GGTGA 1 cut(s) 155
Hpy99I CGWCG 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 106
Hsp92II CATG 4 cut(s) 46, 106, 163, 182
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 2 cut(s) 58, 161
LpnPI CCDG 1 cut(s) 126
MaeI CTAG 2 cut(s) 23, 62
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 5 cut(s) 38, 85, 103, 106, 209
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 158
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 3 cut(s) 92, 104, 195
MslI CAYNNNNRTG 1 cut(s) 47
NcoI CCATGG 2 cut(s) 42, 159
NdeII GATC 1 cut(s) 28
NlaIII CATG 4 cut(s) 46, 106, 163, 182
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 106
PaeI GCATGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp124BI GAGCTC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 1 cut(s) 158
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 155
SduI GDGCHC 1 cut(s) 158
SetI ASST 4 cut(s) 18, 24, 63, 158
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 47
SphI GCATGC 1 cut(s) 106
SspMI CTAG 2 cut(s) 23, 62
SstI GAGCTC 1 cut(s) 158
StyI CCWWGG 2 cut(s) 42, 159
TaqI TCGA 1 cut(s) 152
TscAI CASTG 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 13
XceI RCATGY 1 cut(s) 106
XspI CTAG 2 cut(s) 23, 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.