Rmu_sc0000493.1_g000070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000493.1
OG0000100
Physical Location & Seq
Reverse (-)
324697 .. 326459
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000493.1_g000070.1.cds

Sequence Viewer

Length: 747 bp
atgggtctctactcttacgttgtgagattaaagaataggagaagaacacagaaaaaggacaacatttactggtggggatatgtgaaagcaaaacgacagaagaaagcaaaggcgattgaagagagattgaaagatgctgaaaagagagaaaaagaaaaggagatgaaggcctcactgccagatgcagaacttaaaaagctagaacagatggtagcacaccagaaatttgactatttaccggaggatgttctggaagcaataagagagatggacgctgcagaaaatgcacaaatcaataaagagccagaagagaaacagctacctgctgaggtagtaaactgggaggagaacaaagtatacaattttatggaccaggacaccaagaggagagtccagaaatactggcaaaatgcaccatcaggagtatacttctgggatggaagacggtatggagcacaggttttaagacaggatttaaaagacataatcatggatgaaccgatagcaagcaattgcatcgaatgttatggaattctcttgactgatcagttgttggagaaagaatcacaaggcttggatgtcccaacttttatgaatcccttatgctgggttaaaatggtagagctttcgatgactgcagtaaaagaacaagcagatgacatggtagaacaaggttgcaggatgaaatttgatgaaaagaacatgacagaactcaaagacaaccctcagcaaggagaagattcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

29.32

Weight (kDa)

5.33

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 331
AccI GTMKAC 2 cut(s) 357, 426
AcsI RAATTY 3 cut(s) 224, 531, 686
AfiI CCNNNNNNNGG 2 cut(s) 606, 731
AgsI TTSAA 2 cut(s) 119, 130
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 3 cut(s) 199, 319, 625
AluI AGCT 3 cut(s) 199, 319, 625
Alw21I GWGCWC 1 cut(s) 457
Alw26I GTCTC 1 cut(s) 11
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 3 cut(s) 224, 531, 686
AspS9I GGNCC 1 cut(s) 370
AvaII GGWCC 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 457
BbvCI CCTCAGC 2 cut(s) 327, 726
BbvI GCAGC 1 cut(s) 262
BccI CCATC 4 cut(s) 202, 262, 424, 431
BcgI CGANNNNNNTGC 2 cut(s) 499, 533
BciT130I CCWGG 1 cut(s) 374
BclI TGATCA 1 cut(s) 544
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 1 cut(s) 200
BfmI CTRYAG 2 cut(s) 276, 636
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 370
BmrFI CCNGG 1 cut(s) 374
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 3 cut(s) 124, 172, 525
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 448
Bpu10I CCTNAGC 2 cut(s) 327, 726
BsaI GGTCTC 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 2 cut(s) 606, 731
Bse1I ACTGG 3 cut(s) 74, 344, 407
BseBI CCWGG 1 cut(s) 374
BseGI GGATG 5 cut(s) 250, 442, 499, 583, 687
BseLI CCNNNNNNNGG 2 cut(s) 606, 731
BseMII CTCAG 2 cut(s) 318, 740
BseNI ACTGG 3 cut(s) 74, 344, 407
BseRI GAGGAG 2 cut(s) 359, 400
BseXI GCAGC 1 cut(s) 262
BseYI CCCAGC 1 cut(s) 606
BshFI GGCC 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 457
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 2 cut(s) 606, 731
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 566
BsnI GGCC 1 cut(s) 170
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 457
Bsp143I GATC 1 cut(s) 544
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 2 cut(s) 319, 739
BspMAI CTGCAG 2 cut(s) 280, 640
BspMI ACCTGC 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 11
BsrI ACTGG 3 cut(s) 74, 344, 407
BssMI GATC 1 cut(s) 544
BssNAI GTATAC 2 cut(s) 358, 427
Bst1107I GTATAC 2 cut(s) 358, 427
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 1 cut(s) 447
Bst6I CTCTTC 2 cut(s) 114, 303
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 2 cut(s) 327, 726
BstENI CCTNNNNNAGG 1 cut(s) 729
BstF5I GGATG 5 cut(s) 250, 442, 499, 583, 687
BstKTI GATC 1 cut(s) 547
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 544
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 2 cut(s) 276, 636
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 448
BstZ17I GTATAC 2 cut(s) 358, 427
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 5 cut(s) 250, 442, 499, 583, 687
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 173
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 370
CseI GACGC 1 cut(s) 281
CviAII CATG 3 cut(s) 490, 661, 703
CviJI RGCY 6 cut(s) 170, 199, 304, 319, 573, 625
CviKI_1 RGCY 6 cut(s) 170, 199, 304, 319, 573, 625
DdeI CTNAG 2 cut(s) 327, 726
DpnI GATC 1 cut(s) 546
DpnII GATC 1 cut(s) 544
DraI TTTAAA 1 cut(s) 477
Eam1104I CTCTTC 2 cut(s) 114, 303
EarI CTCTTC 2 cut(s) 114, 303
Eco147I AGGCCT 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 370
EcoNI CCTNNNNNAGG 1 cut(s) 729
EcoRI GAATTC 1 cut(s) 531
EcoRII CCWGG 1 cut(s) 372
FaeI CATG 3 cut(s) 493, 664, 706
FaqI GGGAC 1 cut(s) 566
FatI CATG 3 cut(s) 489, 660, 702
FbaI TGATCA 1 cut(s) 544
FblI GTMKAC 2 cut(s) 357, 426
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 5 cut(s) 257, 449, 506, 590, 694
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 1 cut(s) 200
GluI GCNGC 1 cut(s) 276
GsaI CCCAGC 1 cut(s) 610
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 281
Hin1II CATG 3 cut(s) 493, 664, 706
HinfI GANTC 4 cut(s) 390, 563, 595, 740
HpaII CCGG 1 cut(s) 239
Hpy166II GTNNAC 3 cut(s) 337, 358, 427
Hpy188III TCNNGA 4 cut(s) 251, 394, 420, 538
Hpy8I GTNNAC 3 cut(s) 337, 358, 427
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 447
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 7 cut(s) 185, 278, 287, 413, 516, 638, 678
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 2 cut(s) 327, 726
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 3 cut(s) 493, 664, 706
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 1 cut(s) 544
LmnI GCTCC 1 cut(s) 452
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 3 cut(s) 124, 172, 525
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 18
MalI GATC 1 cut(s) 546
MboI GATC 1 cut(s) 544
MboII GAAGA 5 cut(s) 54, 112, 131, 320, 453
MfeI CAATTG 1 cut(s) 511
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 5 cut(s) 224, 361, 511, 531, 686
MlyI GAGTC 1 cut(s) 399
MmeI TCCRAC 1 cut(s) 534
MnlI CCTC 6 cut(s) 181, 235, 322, 337, 378, 735
MseI TTAA 5 cut(s) 29, 192, 464, 476, 612
MslI CAYNNNNRTG 1 cut(s) 488
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 374
MunI CAATTG 1 cut(s) 511
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 1 cut(s) 544
NlaIII CATG 3 cut(s) 493, 664, 706
PceI AGGCCT 1 cut(s) 170
PfeI GAWTC 3 cut(s) 563, 595, 740
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 606
PspGI CCWGG 1 cut(s) 372
PspPI GGNCC 1 cut(s) 370
PsrI GAACNNNNNNTAC 2 cut(s) 341, 373
PstI CTGCAG 2 cut(s) 280, 640
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 5 cut(s) 29, 192, 464, 476, 612
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 544
Sau96I GGNCC 1 cut(s) 370
SchI GAGTC 1 cut(s) 399
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 1 cut(s) 457
SetI ASST 8 cut(s) 21, 201, 321, 325, 333, 462, 627, 676
SfaNI GCATC 3 cut(s) 124, 172, 525
SfcI CTRYAG 2 cut(s) 276, 636
SinI GGWCC 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 488
Sse9I AATT 5 cut(s) 224, 361, 511, 531, 686
SseBI AGGCCT 1 cut(s) 170
SspMI CTAG 1 cut(s) 200
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 372
TaaI ACNGT 1 cut(s) 447
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 519, 629
TasI AATT 5 cut(s) 224, 361, 511, 531, 686
TfiI GAWTC 3 cut(s) 563, 595, 740
Tru1I TTAA 5 cut(s) 29, 192, 464, 476, 612
Tru9I TTAA 5 cut(s) 29, 192, 464, 476, 612
TscAI CASTG 1 cut(s) 180
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 5 cut(s) 179, 510, 608, 698, 708
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 370
XagI CCTNNNNNAGG 1 cut(s) 729
XapI RAATTY 3 cut(s) 224, 531, 686
XmiI GTMKAC 2 cut(s) 357, 426
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.