Rroxscaffold_1G00069600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000100
Physical Location & Seq
Reverse (-)
90526249 .. 90529255
3007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069600.1

Sequence Viewer

Length: 678 bp
ATGACCCCACCAAATTGGACACCGCCCGGATCAAAAGGAATCCTACCGCCAATCCGAATCCAGCTATGCTTCGACAACAACTTCACCAAACCCGACAACTGTTGCGATCACTCCCACACTCCTCACCTCACTCACCATCTCTGCAATCTCCCTAATCTAAACAAGAAACATGGATCGAGAAGCTCGGCCACATATCAAACCCACACGAGGATGACAACACTCGTCGACGACGGCGAAAGGCTCACCGCCGGACAGAAGGAAGATCACACTTTTTCCATCGAGCACGTGCATGATGCATTGAATAATCTTGCACCAGCGGTAGCTCAGGTTACTCTATCTACCTCACAACCCATGTTCGAGCCTTTGTTCTCTGACCCGTCCTACGACCATGAAAATGACCTCTTCTTCTTTGGAAAGAAGAAATTCAGGATCTCGACAAGAGATATTTCAAAGATCCTAGGAATGCAAGAAAAAGGTGAGTTGGTCCCAAAGTCATCCGAGGGTGCATATCAGTCCGACTTTATCAAGCAGCTTTTTTCAAACAAAGCGAGAATTAACAAGAGAGCCGTGGAGAATGCTCGCAAGATGCGATCAAAGACAATCCAACAACGAGAGGAAGGGATTGAGAAGAAGGACAAAAATGTGGCAAGATTAATCTTGCTGGACTTGTGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.54

Weight (kDa)

8.93

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AciI CCGC 4 cut(s) 23, 47, 246, 317
AclWI GGATC 4 cut(s) 37, 181, 437, 448
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 1 cut(s) 422
AcvI CACGTG 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 3 cut(s) 301, 450, 540
AluBI AGCT 4 cut(s) 64, 183, 323, 532
AluI AGCT 4 cut(s) 64, 183, 323, 532
Alw21I GWGCWC 1 cut(s) 285
AlwI GGATC 4 cut(s) 37, 181, 437, 448
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 529
ApoI RAATTY 1 cut(s) 422
AseI ATTAAT 1 cut(s) 653
Asp700I GAANNNNTTC 1 cut(s) 422
AspA2I CCTAGG 1 cut(s) 457
AspS9I GGNCC 1 cut(s) 484
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 5 cut(s) 76, 116, 125, 235, 488
AvaII GGWCC 1 cut(s) 484
AvrII CCTAGG 1 cut(s) 457
BauI CACGAG 1 cut(s) 205
BbrPI CACGTG 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 541
BccI CCATC 2 cut(s) 144, 284
BceAI ACGGC 2 cut(s) 247, 551
BcnI CCSGG 1 cut(s) 27
BfaI CTAG 1 cut(s) 458
BisI GCNGC 1 cut(s) 530
BlnI CCTAGG 1 cut(s) 457
BlsI GCNGC 1 cut(s) 531
Bme1390I CCNGG 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 484
BmiI GGNNCC 1 cut(s) 486
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 2 cut(s) 283, 576
Bpu10I CCTNAGC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 286
BsaJI CCNNGG 3 cut(s) 457, 498, 567
Bsc4I CCNNNNNNNGG 1 cut(s) 207
BseDI CCNNGG 3 cut(s) 457, 498, 567
BseGI GGATG 2 cut(s) 216, 494
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 338
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 541
BshFI GGCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 2 cut(s) 27, 249
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 470
BsmI GAATGC 2 cut(s) 468, 580
BsnI GGCC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 7 cut(s) 29, 106, 173, 262, 429, 453, 590
BspACI CCGC 4 cut(s) 23, 47, 246, 317
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 486
BspPI GGATC 4 cut(s) 37, 181, 437, 448
BssECI CCNNGG 3 cut(s) 457, 498, 567
BssMI GATC 7 cut(s) 29, 106, 173, 262, 429, 453, 590
BssSI CACGAG 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 457
Bst2BI CACGAG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 407
BstBAI YACGTR 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 2 cut(s) 216, 494
BstKTI GATC 7 cut(s) 32, 109, 176, 265, 432, 456, 593
BstMBI GATC 7 cut(s) 29, 106, 173, 262, 429, 453, 590
BstSCI CCNGG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 541
BstX2I RGATCY 2 cut(s) 429, 453
BstXI CCANNNNNNTGG 1 cut(s) 15
BstYI RGATCY 2 cut(s) 429, 453
BsuRI GGCC 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 2 cut(s) 216, 494
Cac8I GCNNGC 1 cut(s) 580
Cfr13I GGNCC 1 cut(s) 484
CviAII CATG 4 cut(s) 170, 290, 352, 389
CviJI RGCY 8 cut(s) 64, 183, 188, 241, 323, 361, 532, 566
CviKI_1 RGCY 8 cut(s) 64, 183, 188, 241, 323, 361, 532, 566
DdeI CTNAG 1 cut(s) 324
DpnI GATC 7 cut(s) 31, 108, 175, 264, 431, 455, 592
DpnII GATC 7 cut(s) 29, 106, 173, 262, 429, 453, 590
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 484
Eco72I CACGTG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 457
EcoT22I ATGCAT 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 4 cut(s) 173, 293, 355, 392
FaiI YATR 8 cut(s) 67, 171, 193, 291, 353, 390, 508, 676
FaqI GGGAC 1 cut(s) 470
FatI CATG 4 cut(s) 169, 289, 351, 388
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 530
FokI GGATG 2 cut(s) 223, 481
Fsp4HI GCNGC 1 cut(s) 530
FspBI CTAG 1 cut(s) 458
GluI GCNGC 1 cut(s) 530
HaeIII GGCC 1 cut(s) 188
HapII CCGG 2 cut(s) 27, 249
Hin1II CATG 4 cut(s) 173, 293, 355, 392
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 2 cut(s) 39, 57
HpaII CCGG 2 cut(s) 27, 249
HphI GGTGA 5 cut(s) 76, 116, 125, 235, 488
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 4 cut(s) 56, 373, 499, 517
Hpy188III TCNNGA 3 cut(s) 177, 427, 433
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 3 cut(s) 227, 230, 233
HpyAV CCTTC 3 cut(s) 250, 611, 625
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 7 cut(s) 144, 289, 296, 311, 466, 506, 674
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 4 cut(s) 173, 293, 355, 392
Kzo9I GATC 7 cut(s) 29, 106, 173, 262, 429, 453, 590
LpnPI CCDG 7 cut(s) 40, 74, 262, 311, 327, 412, 647
Lsp1109I GCAGC 1 cut(s) 541
LweI GCATC 2 cut(s) 283, 576
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 328
MalI GATC 7 cut(s) 31, 108, 175, 264, 431, 455, 592
MboI GATC 7 cut(s) 29, 106, 173, 262, 429, 453, 590
MboII GAAGA 5 cut(s) 272, 394, 397, 430, 640
MflI RGATCY 2 cut(s) 429, 453
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 3 cut(s) 13, 422, 552
MmeI TCCRAC 2 cut(s) 540, 628
MnlI CCTC 7 cut(s) 132, 137, 201, 352, 410, 493, 607
Mph1103I ATGCAT 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 2 cut(s) 555, 653
MslI CAYNNNNRTG 3 cut(s) 209, 288, 393
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 2 cut(s) 27, 249
MspR9I CCNGG 1 cut(s) 27
Mva1269I GAATGC 2 cut(s) 468, 580
NciI CCSGG 1 cut(s) 27
NdeII GATC 7 cut(s) 29, 106, 173, 262, 429, 453, 590
NlaIII CATG 4 cut(s) 173, 293, 355, 392
NlaIV GGNNCC 1 cut(s) 486
NmeAIII GCCGAG 1 cut(s) 164
NsiI ATGCAT 1 cut(s) 298
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 586
PctI GAATGC 2 cut(s) 468, 580
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 2 cut(s) 39, 57
PkrI GCNGC 1 cut(s) 531
PmaCI CACGTG 1 cut(s) 286
PmlI CACGTG 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 286
PshBI ATTAAT 1 cut(s) 653
PspCI CACGTG 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 1 cut(s) 484
PsuI RGATCY 2 cut(s) 429, 453
RseI CAYNNNNRTG 3 cut(s) 209, 288, 393
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 2 cut(s) 555, 653
SatI GCNGC 1 cut(s) 530
Sau3AI GATC 7 cut(s) 29, 106, 173, 262, 429, 453, 590
Sau96I GGNCC 1 cut(s) 484
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 2 cut(s) 283, 576
SgrDI CGTCGACG 1 cut(s) 224
SinI GGWCC 1 cut(s) 484
SmiMI CAYNNNNRTG 3 cut(s) 209, 288, 393
Sse9I AATT 3 cut(s) 13, 422, 552
SsiI CCGC 4 cut(s) 23, 47, 246, 317
SspMI CTAG 1 cut(s) 458
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 288
TaqI TCGA 6 cut(s) 72, 176, 225, 279, 357, 434
TasI AATT 3 cut(s) 13, 422, 552
TfiI GAWTC 2 cut(s) 39, 57
Tru1I TTAA 2 cut(s) 555, 653
Tru9I TTAA 2 cut(s) 555, 653
TseI GCWGC 1 cut(s) 529
TspDTI ATGAA 1 cut(s) 405
VpaK11BI GGWCC 1 cut(s) 484
VspI ATTAAT 1 cut(s) 653
XapI RAATTY 1 cut(s) 422
XmaJI CCTAGG 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 1 cut(s) 458
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.