Rroxscaffold_6G00422200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000100
Physical Location & Seq
Forward (+)
43188789 .. 43189571
783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00422200.1

Sequence Viewer

Length: 735 bp
ATGCAGAGAAGAACAATCGAAGAACAAAGTCCGGAAGAAACAATTGGCGAAAAGTTGAAACTGATAAAATGGAAGAAAGTAAAAGAGGGAAAAAAGCAAAAGCAGAAAACTGAACATGAAGAAGAATCAAGTGAATATGAGGAAGGAACAACCGAAGATGAAGAAGAATCGATGAAGAACAAGTCCAGAAAAAAACTGCAAGGAACTGAAGATGAAGAAGAATCTAATGAAGAACAAGTCTGCAGTAAGAAGAAGAATAAGGATAAAAAGGAGAAAACTAAAAAGGAGAAAAGAAGAAACAGCGAAGAAACCGAAGATGAAGAAGAAGTTCGTGCAAAGAAGAAGAAGAAAATGGATAAAAGGAAGACAAAAAAAGAGAGTGCAAAGAAGAAGGAAGAAACTGACGAGGAAGAAGATACAAAAGATGATGAAGAGGAAAAAGTCCCAGCGAAGAGAAAAAGATATGTAAAAGAGGGTTATGTGCGTATCGCTGCACAATGCTTGCTTTTTCGAAAACAATTGCGCAAAACAAAAATAACTCCGATCGAAGGGACTTTAGAGCTACCGCAGAAAACACCCTTTGCAACGCCGATAGATGCATTCCATGGAGGTTCAATTAAAGAAAAGGATGCAAAGAAATCGGATGATTTAATCACACTTCGCTACAAGCTTACAAAATGCGACACGCACCTTTTTGTGTTTGGGAACAGGAAATTCGTAATGTCAAGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

28.87

Weight (kDa)

9.1

Isoelectric Point (pI)

73.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 524
AccIII TCCGGA 1 cut(s) 31
AciI CCGC 1 cut(s) 566
AcsI RAATTY 1 cut(s) 713
AcuI CTGAAG 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 548
AgsI TTSAA 2 cut(s) 58, 615
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
AluBI AGCT 2 cut(s) 562, 670
AluI AGCT 2 cut(s) 562, 670
Aor13HI TCCGGA 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 1 cut(s) 713
Asp700I GAANNNNTTC 1 cut(s) 327
AspLEI GCGC 1 cut(s) 525
AsuII TTCGAA 1 cut(s) 511
BbsI GAAGAC 1 cut(s) 371
BbvI GCAGC 1 cut(s) 478
BcgI CGANNNNNNTGC 2 cut(s) 621, 655
BfmI CTRYAG 1 cut(s) 241
BisI GCNGC 1 cut(s) 492
BlsI GCNGC 1 cut(s) 493
BmsI GCATC 2 cut(s) 586, 619
BpiI GAAGAC 1 cut(s) 371
Bpu14I TTCGAA 1 cut(s) 511
Bsa29I ATCGAT 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 604
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 548
BseAI TCCGGA 1 cut(s) 31
BseCI ATCGAT 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 604
BseGI GGATG 2 cut(s) 634, 649
BseLI CCNNNNNNNGG 1 cut(s) 548
BseXI GCAGC 1 cut(s) 478
BseYI CCCAGC 1 cut(s) 445
BsgI GTGCAG 1 cut(s) 477
Bsh1285I CGRYCG 1 cut(s) 546
BshVI ATCGAT 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 546
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 2 cut(s) 428, 565
BslI CCNNNNNNNGG 1 cut(s) 548
BsmFI GGGAC 2 cut(s) 428, 565
BsmI GAATGC 1 cut(s) 599
Bsp119I TTCGAA 1 cut(s) 511
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 1 cut(s) 543
Bsp19I CCATGG 1 cut(s) 604
BspACI CCGC 1 cut(s) 566
BspDI ATCGAT 1 cut(s) 170
BspEI TCCGGA 1 cut(s) 31
BspMAI CTGCAG 1 cut(s) 245
BspT104I TTCGAA 1 cut(s) 511
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 1 cut(s) 543
BssT1I CCWWGG 1 cut(s) 604
Bst6I CTCTTC 2 cut(s) 426, 446
BstBI TTCGAA 1 cut(s) 511
BstC8I GCNNGC 1 cut(s) 503
BstDSI CCRYGG 1 cut(s) 604
BstF5I GGATG 2 cut(s) 634, 649
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 1 cut(s) 546
BstMBI GATC 1 cut(s) 543
BstMCI CGRYCG 1 cut(s) 546
BstSFI CTRYAG 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 371
Bsu15I ATCGAT 1 cut(s) 170
BsuTUI ATCGAT 1 cut(s) 170
BtgI CCRYGG 1 cut(s) 604
BtsCI GGATG 2 cut(s) 634, 649
Cac8I GCNNGC 1 cut(s) 503
CfoI GCGC 1 cut(s) 525
ClaI ATCGAT 1 cut(s) 170
CviAII CATG 2 cut(s) 116, 605
CviJI RGCY 2 cut(s) 562, 670
CviKI_1 RGCY 2 cut(s) 562, 670
DpnI GATC 1 cut(s) 545
DpnII GATC 1 cut(s) 543
Eam1104I CTCTTC 2 cut(s) 426, 446
EarI CTCTTC 2 cut(s) 426, 446
Eco130I CCWWGG 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 604
EcoT22I ATGCAT 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 604
FaeI CATG 2 cut(s) 119, 608
FaiI YATR 5 cut(s) 117, 138, 465, 480, 606
FaqI GGGAC 2 cut(s) 428, 565
FatI CATG 2 cut(s) 115, 604
Fnu4HI GCNGC 1 cut(s) 492
FokI GGATG 2 cut(s) 641, 656
Fsp4HI GCNGC 1 cut(s) 492
FspI TGCGCA 1 cut(s) 524
GlaI GCGC 1 cut(s) 524
GluI GCNGC 1 cut(s) 492
GsaI CCCAGC 1 cut(s) 449
HapII CCGG 1 cut(s) 32
HhaI GCGC 1 cut(s) 525
Hin1II CATG 2 cut(s) 119, 608
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HindIII AAGCTT 1 cut(s) 668
HinfI GANTC 3 cut(s) 125, 167, 221
HpaII CCGG 1 cut(s) 32
Hpy188I TCNGA 2 cut(s) 543, 643
Hpy188III TCNNGA 2 cut(s) 32, 186
HpyAV CCTTC 3 cut(s) 137, 385, 542
HpyCH4V TGCA 9 cut(s) 4, 199, 243, 335, 383, 494, 584, 599, 632
Hsp92II CATG 2 cut(s) 119, 608
HspAI GCGC 1 cut(s) 523
Kpn2I TCCGGA 1 cut(s) 31
Kzo9I GATC 1 cut(s) 543
LpnPI CCDG 4 cut(s) 45, 199, 459, 694
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 2 cut(s) 586, 619
MalI GATC 1 cut(s) 545
MboI GATC 1 cut(s) 543
MfeI CAATTG 2 cut(s) 42, 518
MluCI AATT 4 cut(s) 42, 518, 615, 713
MnlI CCTC 6 cut(s) 79, 133, 400, 427, 466, 602
Mph1103I ATGCAT 1 cut(s) 601
MroI TCCGGA 1 cut(s) 31
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 2 cut(s) 618, 650
MspI CCGG 1 cut(s) 32
MunI CAATTG 2 cut(s) 42, 518
Mva1269I GAATGC 1 cut(s) 599
NcoI CCATGG 1 cut(s) 604
NdeII GATC 1 cut(s) 543
NlaIII CATG 2 cut(s) 119, 608
NsbI TGCGCA 1 cut(s) 524
NsiI ATGCAT 1 cut(s) 601
NspV TTCGAA 1 cut(s) 511
PctI GAATGC 1 cut(s) 599
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 3 cut(s) 125, 167, 221
PkrI GCNGC 1 cut(s) 493
Ple19I CGATCG 1 cut(s) 546
PspFI CCCAGC 1 cut(s) 445
PstI CTGCAG 1 cut(s) 245
PvuI CGATCG 1 cut(s) 546
SaqAI TTAA 2 cut(s) 618, 650
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 1 cut(s) 543
SetI ASST 4 cut(s) 564, 613, 672, 693
SfaNI GCATC 2 cut(s) 586, 619
SfcI CTRYAG 1 cut(s) 241
SfuI TTCGAA 1 cut(s) 511
Sse9I AATT 4 cut(s) 42, 518, 615, 713
SsiI CCGC 1 cut(s) 566
StyI CCWWGG 1 cut(s) 604
TaqI TCGA 4 cut(s) 18, 170, 511, 546
TasI AATT 4 cut(s) 42, 518, 615, 713
TfiI GAWTC 3 cut(s) 125, 167, 221
Tru1I TTAA 2 cut(s) 618, 650
Tru9I TTAA 2 cut(s) 618, 650
TseI GCWGC 1 cut(s) 491
TspDTI ATGAA 7 cut(s) 132, 174, 188, 228, 243, 333, 444
XapI RAATTY 1 cut(s) 713
XmnI GAANNNNTTC 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.