Rroxscaffold_3G00231560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000100
Physical Location & Seq
Forward (+)
16826052 .. 16826607
556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231560.1

Sequence Viewer

Length: 519 bp
ATGGTGAATCCGGAGGAACGAAATGCTACACTTGAGTTAGAGATAAAATTGAAAGAATTGGAGCAAATGTTGAGCACAAAGACTCACACCTCAACAGCGGCTCAGCGACACGGCTCCCCGCCACCTCACCGCACGGTGGCGGAAGAAACTAAATCGACAACTCCATCACATAAGGACTCACGGTTCCGCAGCCCCACAGTCCACATGCCCACGGTGGAGGAAATGGAACAACAAGTCGACATATTTCAGATAGTGAAAAGTCCTATAGTTGAAGAAGCATTTCCACTTCGTACATTGAGCATAGAGAAAGAGAAGAAGACACCGGAGCGAGCAAAAAGAGCGAGTTCACAATGCACCTTACACGGAACATTCGGTGAAACGGTATCATCAATGGGTCTCTACTCTTATGTTGTGAGATTAAAGAATAAGAAAAGAACACAGAAAAAGGACAACATTTACCGGTGGAGAGATGTGAAAGCAAAACGACGAAGAAAGCAAACGAGATTGAAGAGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

20.03

Weight (kDa)

10.07

Isoelectric Point (pI)

69.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 237
AccIII TCCGGA 1 cut(s) 10
AciI CCGC 5 cut(s) 98, 119, 130, 140, 187
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 1 cut(s) 136
AgeI ACCGGT 1 cut(s) 459
AgsI TTSAA 3 cut(s) 52, 272, 508
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 401
Aor13HI TCCGGA 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 189
AsiGI ACCGGT 1 cut(s) 459
Asp700I GAANNNNTTC 1 cut(s) 279
AsuHPI GGTGA 3 cut(s) 16, 119, 386
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 201
BccI CCATC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 264
BisI GCNGC 2 cut(s) 99, 190
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 2 cut(s) 100, 191
BmiI GGNNCC 2 cut(s) 115, 185
BpiI GAAGAC 1 cut(s) 323
Bpu1102I GCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 53
BsaI GGTCTC 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 3 cut(s) 10, 322, 459
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse118I RCCGGY 1 cut(s) 459
BseAI TCCGGA 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 201
BshTI ACCGGT 1 cut(s) 459
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 3 cut(s) 11, 323, 460
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 401
Bso31I GGTCTC 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 77
Bsp13I TCCGGA 1 cut(s) 10
Bsp1720I GCTNAGC 1 cut(s) 102
BspACI CCGC 5 cut(s) 98, 119, 130, 140, 187
BspCNI CTCAG 1 cut(s) 115
BspEI TCCGGA 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 115, 185
BspTNI GGTCTC 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 459
BssAI RCCGGY 1 cut(s) 459
BssECI CCNNGG 1 cut(s) 210
Bst4CI ACNGT 5 cut(s) 136, 183, 199, 214, 382
Bst6I CTCTTC 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 330
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 401
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNSI RCATGY 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 323
BtgI CCRYGG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 330
Cfr10I RCCGGY 1 cut(s) 459
Csp6I GTAC 1 cut(s) 291
CspAI ACCGGT 1 cut(s) 459
CviAII CATG 1 cut(s) 205
CviJI RGCY 3 cut(s) 101, 114, 192
CviKI_1 RGCY 3 cut(s) 101, 114, 192
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
EciI GGCGGA 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 401
FaeI CATG 1 cut(s) 208
FaiI YATR 6 cut(s) 171, 206, 242, 266, 302, 408
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 126
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 99, 190
Fsp4HI GCNGC 2 cut(s) 99, 190
GluI GCNGC 2 cut(s) 99, 190
HapII CCGG 3 cut(s) 11, 323, 460
Hin1II CATG 1 cut(s) 208
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 3 cut(s) 7, 82, 176
HpaII CCGG 3 cut(s) 11, 323, 460
HphI GGTGA 3 cut(s) 16, 119, 386
Hpy166II GTNNAC 3 cut(s) 202, 238, 347
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 3 cut(s) 202, 238, 347
Hpy99I CGWCG 1 cut(s) 489
HpyCH4III ACNGT 5 cut(s) 136, 183, 199, 214, 382
HpyCH4V TGCA 1 cut(s) 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 1 cut(s) 208
Kpn2I TCCGGA 1 cut(s) 10
LmnI GCTCC 3 cut(s) 61, 119, 325
LpnPI CCDG 3 cut(s) 24, 336, 473
Lsp1109I GCAGC 1 cut(s) 201
MboII GAAGA 5 cut(s) 155, 284, 325, 328, 501
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 2 cut(s) 47, 56
MlyI GAGTC 2 cut(s) 76, 170
MnlI CCTC 4 cut(s) 7, 100, 135, 211
MroI TCCGGA 1 cut(s) 10
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 2 cut(s) 419, 517
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 3 cut(s) 11, 323, 460
MwoI GCNNNNNNNGC 1 cut(s) 338
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 115, 185
NspI RCATGY 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 7
PinAI ACCGGT 1 cut(s) 459
PkrI GCNGC 2 cut(s) 100, 191
PleI GAGTC 2 cut(s) 76, 170
PpsI GAGTC 2 cut(s) 76, 170
PspN4I GGNNCC 2 cut(s) 115, 185
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 419, 517
SatI GCNGC 2 cut(s) 99, 190
SchI GAGTC 2 cut(s) 76, 170
SduI GDGCHC 1 cut(s) 77
SetI ASST 3 cut(s) 92, 127, 359
SfcI CTRYAG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 2 cut(s) 47, 56
SsiI CCGC 5 cut(s) 98, 119, 130, 140, 187
TaaI ACNGT 5 cut(s) 136, 183, 199, 214, 382
TaqI TCGA 2 cut(s) 155, 237
TasI AATT 2 cut(s) 47, 56
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 419, 517
Tru9I TTAA 2 cut(s) 419, 517
TseI GCWGC 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 378
XceI RCATGY 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.