Rroxscaffold_4G00277030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000100
Physical Location & Seq
Forward (+)
503198 .. 504873
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00277030.1

Sequence Viewer

Length: 468 bp
ATGCGATCAAAGACAATCCAACAACAAGAGGAAGGGATTGAGAAGAAGGACAAAAATGTGGCAAGATTAATCTTGCTGGACTTGTGCATAAAGTTTCGTTCCCAAACGCAGGAGGAACAATTTCATGGGCCTACGTCAAAGCCTCGCGAAAATTTGGATAAGATCGATCTTATGATCGGGCGAGGGAAGTTGAAACTTCTTAAAAAAGTCTATAAAGACTTTGAAAAAGAAAAGGAGTCAAGCAGCCCATATGGTAATACGGGGCTGCGTTGTGATAATACCGGACAGGCATTTATGGTGGGGAGATGTGAAAGCAAAACGACGAAGAAAGCAAAGGAGATTGAAGAGAGATTGAAAGATGTCGAAAAGAAAGAAAAAGAAAAGGATTTGAAGGCCTCACCGCAAGATGCTGAACATAAAAAGCTAGAACAGATGGTAGCACAAACGAAGTTGGACGATTTACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.94

Weight (kDa)

9.11

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 147
AciI CCGC 1 cut(s) 401
AcsI RAATTY 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 5 cut(s) 193, 224, 344, 355, 391
AluBI AGCT 1 cut(s) 424
AluI AGCT 1 cut(s) 424
AoxI GGCC 2 cut(s) 128, 393
ApeKI GCWGC 2 cut(s) 243, 265
ApoI RAATTY 1 cut(s) 151
AseI ATTAAT 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 390
BbvI GCAGC 2 cut(s) 252, 255
BccI CCATC 1 cut(s) 427
BfaI CTAG 1 cut(s) 425
BisI GCNGC 2 cut(s) 244, 266
BlsI GCNGC 2 cut(s) 245, 267
BmgT120I GGNCC 1 cut(s) 128
BmsI GCATC 1 cut(s) 397
Bsa29I ATCGAT 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 109
BseCI ATCGAT 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 252, 255
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 2 cut(s) 130, 395
BshVI ATCGAT 1 cut(s) 165
BsiSI CCGG 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 109
BsnI GGCC 2 cut(s) 130, 395
Bsp143I GATC 4 cut(s) 5, 162, 166, 174
Bsp68I TCGCGA 1 cut(s) 147
BspACI CCGC 1 cut(s) 401
BspANI GGCC 2 cut(s) 130, 395
BspDI ATCGAT 1 cut(s) 165
BspFNI CGCG 1 cut(s) 147
BssMI GATC 4 cut(s) 5, 162, 166, 174
Bst4CI ACNGT 1 cut(s) 465
Bst6I CTCTTC 1 cut(s) 339
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 4 cut(s) 8, 165, 169, 177
BstMBI GATC 4 cut(s) 5, 162, 166, 174
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 252, 255
Bsu15I ATCGAT 1 cut(s) 165
BsuRI GGCC 2 cut(s) 130, 395
BsuTUI ATCGAT 1 cut(s) 165
BtuMI TCGCGA 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 165
CviAII CATG 1 cut(s) 125
CviJI RGCY 6 cut(s) 130, 142, 246, 265, 395, 424
CviKI_1 RGCY 6 cut(s) 130, 142, 246, 265, 395, 424
DpnI GATC 4 cut(s) 7, 164, 168, 176
DpnII GATC 4 cut(s) 5, 162, 166, 174
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco147I AGGCCT 1 cut(s) 395
FaeI CATG 1 cut(s) 128
FaiI YATR 8 cut(s) 89, 126, 173, 213, 250, 252, 296, 417
FatI CATG 1 cut(s) 124
FauNDI CATATG 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 244, 266
Fsp4HI GCNGC 2 cut(s) 244, 266
FspBI CTAG 1 cut(s) 425
GluI GCNGC 2 cut(s) 244, 266
HaeIII GGCC 2 cut(s) 130, 395
HapII CCGG 1 cut(s) 282
Hin1II CATG 1 cut(s) 128
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 390
Hpy188III TCNNGA 1 cut(s) 146
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 3 cut(s) 26, 40, 385
HpyCH4III ACNGT 1 cut(s) 465
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 134
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 4 cut(s) 5, 162, 166, 174
LpnPI CCDG 4 cut(s) 62, 95, 272, 295
Lsp1109I GCAGC 2 cut(s) 252, 255
LweI GCATC 1 cut(s) 397
MaeI CTAG 1 cut(s) 425
MaeII ACGT 1 cut(s) 134
MalI GATC 4 cut(s) 7, 164, 168, 176
MboI GATC 4 cut(s) 5, 162, 166, 174
MboII GAAGA 3 cut(s) 55, 337, 356
MluCI AATT 2 cut(s) 119, 151
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 2 cut(s) 43, 432
MnlI CCTC 5 cut(s) 22, 106, 153, 176, 406
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 2 cut(s) 68, 201
MspI CCGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 147
NdeI CATATG 1 cut(s) 250
NdeII GATC 4 cut(s) 5, 162, 166, 174
NlaIII CATG 1 cut(s) 128
NruI TCGCGA 1 cut(s) 147
PceI AGGCCT 1 cut(s) 395
PdmI GAANNNNTTC 1 cut(s) 120
PkrI GCNGC 2 cut(s) 245, 267
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 68
PspPI GGNCC 1 cut(s) 128
RruI TCGCGA 1 cut(s) 147
SaqAI TTAA 2 cut(s) 68, 201
SatI GCNGC 2 cut(s) 244, 266
Sau3AI GATC 4 cut(s) 5, 162, 166, 174
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 245
SetI ASST 2 cut(s) 137, 426
SfaNI GCATC 1 cut(s) 397
Sse9I AATT 2 cut(s) 119, 151
SseBI AGGCCT 1 cut(s) 395
SsiI CCGC 1 cut(s) 401
SspMI CTAG 1 cut(s) 425
StuI AGGCCT 1 cut(s) 395
TaaI ACNGT 1 cut(s) 465
TaiI ACGT 1 cut(s) 137
TaqI TCGA 2 cut(s) 165, 363
TasI AATT 2 cut(s) 119, 151
Tru1I TTAA 2 cut(s) 68, 201
Tru9I TTAA 2 cut(s) 68, 201
TseI GCWGC 2 cut(s) 243, 265
TspDTI ATGAA 1 cut(s) 113
VspI ATTAAT 1 cut(s) 68
XapI RAATTY 1 cut(s) 151
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.