Rmu_ssc0000443.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000443.1
OG0000100
Physical Location & Seq
Forward (+)
8123 .. 10922
2800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000443.1_g000005.1.cds

Sequence Viewer

Length: 1065 bp
atggtgcgagaacatttcagcgttttgtcattcttcaatgtctttgtaactgcccatgtcgctgcactagtcactggctatgatcaagtcactggccaagtacctggccaagtcattgttcatgtcactgtttatgttactatcattaacatgaaattcagaatgtcgacaagtgatatatttatgattttaggagtgcagggatatggtttatcagtaccaaaaactaaagaaggggcatacagttctgagttcgtgactaaatactttgacaaaaagcagaggatcaacaaggcagctacagaggaagccttgaagaaggcattgaaaatctttaataaagttaaagaagatgtagaggaagatgattatgagtctaatacagacacagaaagtcaagaaaaacaaaatgatgggcaagaagaaaatgttgaaaagagaaccagtggaaacatggagaaagagactgcatggaatgatatacagaagaaagaattagagacaaatcttcagaaaaaggaagaagtgctaagaaatgtggaaatagagaaaaagggtatggaagaaaaaataagaaaattggagaaagaactggaaacaagagaaaagaaagctgaccacattaataataagaagatggagacagacatagggaagaacgatgaagagaagaacgaattacagagaaagctggagagaatggaagaagagctaagtgctttgaaaaaagaagtcgacgagaaagaaaaagaaattggcaaaataaatgaagagaaggaggatgtgttattggaaaatgaggtgctgaaaattgagaaagcctccctgaattcaagagtgaagaaattggagagcataatgatgacactaactgtgaagtatgagtcgccaatagcacctccaggtgatgataacaactcaactcctcctcccccaccgcttagtttccccctgccaaaatcaagccaactgacagcaagaactccaaaaacacaaaatcccaaggaggtattcagggaactcagtcacaacctgcctactccacagcaagcgcatctaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

40.71

Weight (kDa)

5.6

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1041
AccI GTMKAC 2 cut(s) 167, 735
AciI CCGC 1 cut(s) 938
AclWI GGATC 1 cut(s) 293
AcoI YGGCCR 2 cut(s) 94, 106
AcsI RAATTY 2 cut(s) 155, 829
AcuI CTGAAG 1 cut(s) 494
AfaI GTAC 2 cut(s) 102, 219
AgsI TTSAA 6 cut(s) 37, 316, 328, 434, 724, 834
AhlI ACTAGT 1 cut(s) 67
AjnI CCWGG 2 cut(s) 103, 901
AjuI GAANNNNNNNTTGG 6 cut(s) 102, 134, 738, 770, 995, 1027
AluBI AGCT 4 cut(s) 299, 614, 691, 712
AluI AGCT 4 cut(s) 299, 614, 691, 712
Alw26I GTCTC 3 cut(s) 458, 494, 635
AlwI GGATC 1 cut(s) 293
AoxI GGCC 2 cut(s) 94, 106
ApeKI GCWGC 2 cut(s) 62, 296
ApoI RAATTY 2 cut(s) 155, 829
AseI ATTAAT 1 cut(s) 624
AspLEI GCGC 1 cut(s) 1054
AsuHPI GGTGA 1 cut(s) 917
BalI TGGCCA 2 cut(s) 96, 108
BbvI GCAGC 2 cut(s) 49, 308
BccI CCATC 2 cut(s) 407, 631
BciT130I CCWGG 2 cut(s) 105, 903
BclI TGATCA 1 cut(s) 82
BcoDI GTCTC 3 cut(s) 458, 494, 635
BcuI ACTAGT 1 cut(s) 67
BfaI CTAG 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 300
BfuAI ACCTGC 1 cut(s) 1041
BisI GCNGC 2 cut(s) 63, 297
BlsI GCNGC 2 cut(s) 64, 298
Bme1390I CCNGG 2 cut(s) 105, 903
BmrFI CCNGG 2 cut(s) 105, 903
BplI GAGNNNNNCTC 2 cut(s) 806, 838
BpmI CTGGAG 2 cut(s) 713, 885
BsaJI CCNNGG 1 cut(s) 1002
BsaXI ACNNNNNCTCC 4 cut(s) 770, 800, 913, 943
Bse1I ACTGG 4 cut(s) 79, 97, 444, 597
BseBI CCWGG 2 cut(s) 105, 903
BseDI CCNNGG 1 cut(s) 1002
BseGI GGATG 1 cut(s) 787
BseMII CTCAG 2 cut(s) 240, 1036
BseNI ACTGG 4 cut(s) 79, 97, 444, 597
BseRI GAGGAG 2 cut(s) 915, 918
BseXI GCAGC 2 cut(s) 49, 308
BsgI GTGCAG 2 cut(s) 48, 218
BshFI GGCC 2 cut(s) 96, 108
BsmAI GTCTC 3 cut(s) 458, 494, 635
BsnI GGCC 2 cut(s) 96, 108
Bsp143I GATC 2 cut(s) 82, 285
BspACI CCGC 1 cut(s) 938
BspANI GGCC 2 cut(s) 96, 108
BspCNI CTCAG 2 cut(s) 241, 1035
BspMI ACCTGC 1 cut(s) 1041
BspPI GGATC 1 cut(s) 293
BspQI GCTCTTC 1 cut(s) 702
BsrI ACTGG 4 cut(s) 79, 97, 444, 597
BssECI CCNNGG 1 cut(s) 1002
BssMI GATC 2 cut(s) 82, 285
BssT1I CCWWGG 1 cut(s) 1002
Bst2UI CCWGG 2 cut(s) 105, 903
Bst4CI ACNGT 3 cut(s) 130, 245, 874
Bst6I CTCTTC 3 cut(s) 660, 702, 765
BstC8I GCNNGC 1 cut(s) 1050
BstDEI CTNAG 6 cut(s) 249, 530, 713, 941, 1022, 1058
BstF5I GGATG 1 cut(s) 787
BstHHI GCGC 1 cut(s) 1054
BstKTI GATC 2 cut(s) 85, 288
BstMAI GTCTC 3 cut(s) 458, 494, 635
BstMBI GATC 2 cut(s) 82, 285
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 2 cut(s) 105, 903
BstSCI CCNGG 2 cut(s) 103, 901
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 49, 308
BstXI CCANNNNNNTGG 1 cut(s) 104
BsuRI GGCC 2 cut(s) 96, 108
BtsCI GGATG 1 cut(s) 787
BtsIMutI CAGTG 4 cut(s) 72, 90, 126, 451
BveI ACCTGC 1 cut(s) 1041
Cac8I GCNNGC 1 cut(s) 1050
CfoI GCGC 1 cut(s) 1054
Csp6I GTAC 2 cut(s) 101, 218
CviAII CATG 5 cut(s) 56, 122, 151, 454, 471
CviQI GTAC 2 cut(s) 101, 218
DdeI CTNAG 6 cut(s) 249, 530, 713, 941, 1022, 1058
DpnI GATC 2 cut(s) 84, 287
DpnII GATC 2 cut(s) 82, 285
EaeI YGGCCR 2 cut(s) 94, 106
Eam1104I CTCTTC 3 cut(s) 660, 702, 765
EarI CTCTTC 3 cut(s) 660, 702, 765
Eco130I CCWWGG 1 cut(s) 1002
Eco57I CTGAAG 1 cut(s) 494
EcoRI GAATTC 1 cut(s) 829
EcoRII CCWGG 2 cut(s) 103, 901
EcoT14I CCWWGG 1 cut(s) 1002
ErhI CCWWGG 1 cut(s) 1002
FaeI CATG 5 cut(s) 59, 125, 154, 457, 474
FatI CATG 5 cut(s) 55, 121, 150, 453, 470
FbaI TGATCA 1 cut(s) 82
FblI GTMKAC 2 cut(s) 167, 735
Fnu4HI GCNGC 2 cut(s) 63, 297
FokI GGATG 1 cut(s) 794
Fsp4HI GCNGC 2 cut(s) 63, 297
FspBI CTAG 1 cut(s) 68
GlaI GCGC 1 cut(s) 1053
GluI GCNGC 2 cut(s) 63, 297
GsuI CTGGAG 2 cut(s) 713, 885
HaeIII GGCC 2 cut(s) 96, 108
HhaI GCGC 1 cut(s) 1054
Hin1II CATG 5 cut(s) 59, 125, 154, 457, 474
Hin6I GCGC 1 cut(s) 1052
HinP1I GCGC 1 cut(s) 1052
HincII GTYRAC 2 cut(s) 168, 736
HindII GTYRAC 2 cut(s) 168, 736
HinfI GANTC 2 cut(s) 374, 884
HphI GGTGA 1 cut(s) 917
Hpy166II GTNNAC 2 cut(s) 168, 736
Hpy188I TCNGA 3 cut(s) 161, 250, 513
Hpy188III TCNNGA 3 cut(s) 256, 398, 834
Hpy8I GTNNAC 2 cut(s) 168, 736
Hpy99I CGWCG 1 cut(s) 740
HpyAV CCTTC 3 cut(s) 227, 313, 769
HpyCH4III ACNGT 3 cut(s) 130, 245, 874
HpyCH4V TGCA 3 cut(s) 65, 199, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 6 cut(s) 249, 530, 713, 941, 1022, 1058
Hsp92II CATG 5 cut(s) 59, 125, 154, 457, 474
HspAI GCGC 1 cut(s) 1052
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 2 cut(s) 82, 285
LguI GCTCTTC 1 cut(s) 702
Lsp1109I GCAGC 2 cut(s) 49, 308
MaeI CTAG 1 cut(s) 68
MaeIII GTNAC 7 cut(s) 46, 70, 88, 124, 136, 256, 1025
MalI GATC 2 cut(s) 84, 287
MboI GATC 2 cut(s) 82, 285
MlsI TGGCCA 2 cut(s) 96, 108
MluCI AATT 8 cut(s) 155, 494, 578, 677, 753, 810, 829, 845
MluNI TGGCCA 2 cut(s) 96, 108
MlyI GAGTC 2 cut(s) 383, 893
Mox20I TGGCCA 2 cut(s) 96, 108
MscI TGGCCA 2 cut(s) 96, 108
MseI TTAA 4 cut(s) 147, 336, 345, 624
MslI CAYNNNNRTG 2 cut(s) 149, 860
Msp20I TGGCCA 2 cut(s) 96, 108
MspR9I CCNGG 2 cut(s) 105, 903
MvaI CCWGG 2 cut(s) 105, 903
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 2 cut(s) 82, 285
NlaIII CATG 5 cut(s) 59, 125, 154, 457, 474
NmuCI GTSAC 5 cut(s) 70, 88, 124, 256, 1025
PciSI GCTCTTC 1 cut(s) 702
PkrI GCNGC 2 cut(s) 64, 298
PleI GAGTC 2 cut(s) 382, 892
PpsI GAGTC 2 cut(s) 382, 892
PshBI ATTAAT 1 cut(s) 624
Psp6I CCWGG 2 cut(s) 103, 901
PspGI CCWGG 2 cut(s) 103, 901
RsaI GTAC 2 cut(s) 102, 219
RsaNI GTAC 2 cut(s) 101, 218
RseI CAYNNNNRTG 2 cut(s) 149, 860
SalI GTCGAC 2 cut(s) 166, 734
SapI GCTCTTC 1 cut(s) 702
SaqAI TTAA 4 cut(s) 147, 336, 345, 624
SatI GCNGC 2 cut(s) 63, 297
Sau3AI GATC 2 cut(s) 82, 285
SchI GAGTC 2 cut(s) 383, 893
ScrFI CCNGG 2 cut(s) 105, 903
SfcI CTRYAG 1 cut(s) 300
SmiMI CAYNNNNRTG 2 cut(s) 149, 860
SpeI ACTAGT 1 cut(s) 67
Sse9I AATT 8 cut(s) 155, 494, 578, 677, 753, 810, 829, 845
SsiI CCGC 1 cut(s) 938
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 2 cut(s) 103, 901
StyI CCWWGG 1 cut(s) 1002
TaaI ACNGT 3 cut(s) 130, 245, 874
TaqI TCGA 2 cut(s) 167, 735
TasI AATT 8 cut(s) 155, 494, 578, 677, 753, 810, 829, 845
Tru1I TTAA 4 cut(s) 147, 336, 345, 624
Tru9I TTAA 4 cut(s) 147, 336, 345, 624
TscAI CASTG 4 cut(s) 79, 97, 133, 451
TseFI GTSAC 5 cut(s) 70, 88, 124, 256, 1025
TseI GCWGC 2 cut(s) 62, 296
Tsp45I GTSAC 5 cut(s) 70, 88, 124, 256, 1025
TspDTI ATGAA 4 cut(s) 110, 167, 678, 783
TspRI CASTG 4 cut(s) 79, 97, 133, 451
VspI ATTAAT 1 cut(s) 624
XapI RAATTY 2 cut(s) 155, 829
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XmiI GTMKAC 2 cut(s) 167, 735
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.