Rh2BG539800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000100
Physical Location & Seq
Reverse (-)
74813152 .. 74813736
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG539800.1

Sequence Viewer

Length: 585 bp
ATGTTATTGGAAAATGAGGTGTTGCAAATTGAGAAAGCCTCACTGATTAAAAGAGTGAAGCAATTGGAGGGCATAGTAATGGCACTAACTGAGAAGTATGAGTCGCCAATAGCACGTCCAGGTGATGACAACGACTCAACTCCACCTCCTAGTTTCCCTCCACCAAAATCAAAGGTCCCTCAGGACAAGCCAACTGACAGCAAGCACTCCAAAAACACAAAATCTCAAAGTGGAATTCAGGGAACTCAATCACAACCTACTGACTCCACAGCAAGCGGATCTGCAGAACCTCACTCTACCGACCAAGGACATCAGTCACCACTTGAATGCCTTGCCCAAGTAGCTGCACAAGTTCATTCACCAACCTCTCCTGATGTTAAATTGAGAATGACGGAAGATGCTTGCACACCGAATACTGCTTGGGTTAATGCATTGTTTGTGTTTCCACCTCCGGGCGCATTACAAACTCCACCTCCAAGAAAAGTCCATTTGGAAGATATGGAAGCAGAGCCACACAAGTATCAGATCATTGTATCACCAGAAGTCCATTTGTTGTCCTCATACGGAACAGATGACAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.06

Weight (kDa)

5.45

Isoelectric Point (pI)

65.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 276
AclWI GGATC 1 cut(s) 286
AcsI RAATTY 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 452
AgsI TTSAA 1 cut(s) 326
AjiI CACGTC 1 cut(s) 116
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 2 cut(s) 344, 582
AluI AGCT 2 cut(s) 344, 582
AlwI GGATC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 234
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 4 cut(s) 134, 309, 351, 528
AvaII GGWCC 1 cut(s) 175
AxyI CCTNAGG 1 cut(s) 180
BaeI ACNNNNGTAYC 2 cut(s) 503, 536
BbvI GCAGC 1 cut(s) 331
BciT130I CCWGG 1 cut(s) 120
BcnI CCSGG 1 cut(s) 453
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 282
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
Bme1390I CCNGG 2 cut(s) 120, 453
Bme18I GGWCC 1 cut(s) 175
BmgBI CACGTC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 2 cut(s) 120, 453
BmsI GCATC 1 cut(s) 388
BoxI GACNNNNGTC 1 cut(s) 313
BplI GAGNNNNNCTC 2 cut(s) 23, 55
BpuMI CCSGG 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 304
BsaXI ACNNNNNCTCC 4 cut(s) 130, 160, 457, 487
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse21I CCTNAGG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 81, 194
BseXI GCAGC 1 cut(s) 331
BsgI GTGCAG 1 cut(s) 330
BsiSI CCGG 1 cut(s) 452
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 452
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 332
Bsp143I GATC 2 cut(s) 278, 525
BspACI CCGC 1 cut(s) 276
BspCNI CTCAG 2 cut(s) 82, 193
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 278, 525
BssT1I CCWWGG 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 120
BstC8I GCNNGC 3 cut(s) 203, 274, 403
BstDEI CTNAG 2 cut(s) 90, 180
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 2 cut(s) 281, 528
BstMBI GATC 2 cut(s) 278, 525
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 1 cut(s) 120
BstPAI GACNNNNGTC 1 cut(s) 313
BstSCI CCNGG 2 cut(s) 118, 451
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
Bsu36I CCTNAGG 1 cut(s) 180
BtrI CACGTC 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 3 cut(s) 203, 274, 403
CfoI GCGC 1 cut(s) 458
Cfr13I GGNCC 1 cut(s) 175
CviJI RGCY 5 cut(s) 38, 190, 344, 511, 582
CviKI_1 RGCY 5 cut(s) 38, 190, 344, 511, 582
DdeI CTNAG 2 cut(s) 90, 180
DpnI GATC 2 cut(s) 280, 527
DpnII GATC 2 cut(s) 278, 525
Eco130I CCWWGG 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 175
Eco81I CCTNAGG 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 175
EcoRI GAATTC 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 304
EcoT22I ATGCAT 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 304
FaiI YATR 4 cut(s) 74, 99, 500, 562
FaqI GGGAC 1 cut(s) 161
Fnu4HI GCNGC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 1 cut(s) 150
GlaI GCGC 1 cut(s) 457
GluI GCNGC 1 cut(s) 345
HapII CCGG 1 cut(s) 452
HhaI GCGC 1 cut(s) 458
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HinfI GANTC 3 cut(s) 101, 134, 263
HpaII CCGG 1 cut(s) 452
HphI GGTGA 4 cut(s) 134, 309, 351, 528
Hpy188I TCNGA 1 cut(s) 525
Hpy188III TCNNGA 2 cut(s) 182, 371
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 5 cut(s) 25, 284, 347, 405, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 2 cut(s) 90, 180
HpySE526I ACGT 1 cut(s) 115
HspAI GCGC 1 cut(s) 456
Kzo9I GATC 2 cut(s) 278, 525
LpnPI CCDG 7 cut(s) 105, 132, 167, 224, 384, 465, 552
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 1 cut(s) 388
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 315
MalI GATC 2 cut(s) 280, 527
MboI GATC 2 cut(s) 278, 525
MboII GAAGA 2 cut(s) 407, 506
MfeI CAATTG 1 cut(s) 62
MflI RGATCY 1 cut(s) 278
MluCI AATT 4 cut(s) 27, 62, 234, 380
MlyI GAGTC 3 cut(s) 110, 128, 257
Mph1103I ATGCAT 1 cut(s) 433
MseI TTAA 3 cut(s) 48, 378, 426
MslI CAYNNNNRTG 2 cut(s) 77, 325
MspI CCGG 1 cut(s) 452
MspR9I CCNGG 2 cut(s) 120, 453
MunI CAATTG 1 cut(s) 62
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 453
NdeII GATC 2 cut(s) 278, 525
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 315
NsiI ATGCAT 1 cut(s) 433
PctI GAATGC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 346
PleI GAGTC 3 cut(s) 109, 128, 257
PpsI GAGTC 3 cut(s) 109, 128, 257
PpuMI RGGWCCY 1 cut(s) 175
PshAI GACNNNNGTC 1 cut(s) 313
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 278
RseI CAYNNNNRTG 2 cut(s) 77, 325
SaqAI TTAA 3 cut(s) 48, 378, 426
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 2 cut(s) 278, 525
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 3 cut(s) 110, 128, 257
ScrFI CCNGG 2 cut(s) 120, 453
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 2 cut(s) 77, 325
Sse9I AATT 4 cut(s) 27, 62, 234, 380
SsiI CCGC 1 cut(s) 276
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 118, 451
StyI CCWWGG 1 cut(s) 304
TaiI ACGT 1 cut(s) 118
TasI AATT 4 cut(s) 27, 62, 234, 380
Tru1I TTAA 3 cut(s) 48, 378, 426
Tru9I TTAA 3 cut(s) 48, 378, 426
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 1 cut(s) 344
TspGWI ACGGA 2 cut(s) 407, 579
TspRI CASTG 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 234
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.