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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 674 |
| AccIII | TCCGGA | 2 cut(s) | 326, 466 |
| AciI | CCGC | 3 cut(s) | 674, 696, 707 |
| AclWI | GGATC | 2 cut(s) | 174, 486 |
| AcsI | RAATTY | 2 cut(s) | 150, 583 |
| AfaI | GTAC | 1 cut(s) | 868 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 326, 713, 790 |
| AflIII | ACRYGT | 1 cut(s) | 816 |
| AgsI | TTSAA | 5 cut(s) | 193, 224, 392, 628, 848 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 743, 775 |
| Alw21I | GWGCWC | 1 cut(s) | 653 |
| AlwI | GGATC | 2 cut(s) | 174, 486 |
| Aor13HI | TCCGGA | 2 cut(s) | 326, 466 |
| AoxI | GGCC | 1 cut(s) | 128 |
| ApeKI | GCWGC | 1 cut(s) | 267 |
| ApoI | RAATTY | 2 cut(s) | 150, 583 |
| AseI | ATTAAT | 1 cut(s) | 68 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 120, 855 |
| AspS9I | GGNCC | 1 cut(s) | 128 |
| AsuHPI | GGTGA | 1 cut(s) | 696 |
| AsuII | TTCGAA | 1 cut(s) | 517 |
| BanII | GRGCYC | 1 cut(s) | 769 |
| BbsI | GAAGAC | 1 cut(s) | 899 |
| Bbv12I | GWGCWC | 1 cut(s) | 653 |
| BbvI | GCAGC | 1 cut(s) | 254 |
| BccI | CCATC | 1 cut(s) | 748 |
| BfmI | CTRYAG | 2 cut(s) | 770, 840 |
| BisI | GCNGC | 2 cut(s) | 268, 675 |
| BlpI | GCTNAGC | 1 cut(s) | 678 |
| BlsI | GCNGC | 2 cut(s) | 269, 676 |
| BmgT120I | GGNCC | 1 cut(s) | 128 |
| BmiI | GGNNCC | 1 cut(s) | 761 |
| BmsI | GCATC | 1 cut(s) | 605 |
| BpiI | GAAGAC | 1 cut(s) | 899 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 678 |
| Bpu14I | TTCGAA | 1 cut(s) | 517 |
| BsaWI | WCCGGW | 2 cut(s) | 326, 466 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 629, 659 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 326, 713, 790 |
| Bse1I | ACTGG | 1 cut(s) | 310 |
| BseAI | TCCGGA | 2 cut(s) | 326, 466 |
| BseGI | GGATG | 3 cut(s) | 357, 366, 599 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 326, 713, 790 |
| BseMII | CTCAG | 1 cut(s) | 692 |
| BseNI | ACTGG | 1 cut(s) | 310 |
| BseXI | GCAGC | 1 cut(s) | 254 |
| Bsh1236I | CGCG | 1 cut(s) | 674 |
| BshFI | GGCC | 1 cut(s) | 130 |
| BsiHKAI | GWGCWC | 1 cut(s) | 653 |
| BsiSI | CCGG | 2 cut(s) | 327, 467 |
| BslFI | GGGAC | 1 cut(s) | 377 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 326, 713, 790 |
| BsmFI | GGGAC | 1 cut(s) | 377 |
| BsnI | GGCC | 1 cut(s) | 130 |
| Bsp119I | TTCGAA | 1 cut(s) | 517 |
| Bsp1286I | GDGCHC | 2 cut(s) | 653, 769 |
| Bsp13I | TCCGGA | 2 cut(s) | 326, 466 |
| Bsp143I | GATC | 6 cut(s) | 5, 161, 166, 174, 343, 478 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 678 |
| BspACI | CCGC | 3 cut(s) | 674, 696, 707 |
| BspANI | GGCC | 1 cut(s) | 130 |
| BspCNI | CTCAG | 1 cut(s) | 691 |
| BspEI | TCCGGA | 2 cut(s) | 326, 466 |
| BspFNI | CGCG | 1 cut(s) | 674 |
| BspLI | GGNNCC | 1 cut(s) | 761 |
| BspPI | GGATC | 2 cut(s) | 174, 486 |
| BspT104I | TTCGAA | 1 cut(s) | 517 |
| BsrI | ACTGG | 1 cut(s) | 310 |
| BssMI | GATC | 6 cut(s) | 5, 161, 166, 174, 343, 478 |
| Bst4CI | ACNGT | 6 cut(s) | 285, 463, 713, 759, 774, 954 |
| Bst6I | CTCTTC | 2 cut(s) | 426, 468 |
| BstBI | TTCGAA | 1 cut(s) | 517 |
| BstC8I | GCNNGC | 1 cut(s) | 907 |
| BstDEI | CTNAG | 2 cut(s) | 522, 678 |
| BstF5I | GGATG | 3 cut(s) | 357, 366, 599 |
| BstFNI | CGCG | 1 cut(s) | 674 |
| BstKTI | GATC | 6 cut(s) | 8, 164, 169, 177, 346, 481 |
| BstMBI | GATC | 6 cut(s) | 5, 161, 166, 174, 343, 478 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 915 |
| BstNSI | RCATGY | 2 cut(s) | 783, 820 |
| BstSFI | CTRYAG | 2 cut(s) | 770, 840 |
| BstUI | CGCG | 1 cut(s) | 674 |
| BstV1I | GCAGC | 1 cut(s) | 254 |
| BstV2I | GAAGAC | 1 cut(s) | 899 |
| BstX2I | RGATCY | 1 cut(s) | 166 |
| BstYI | RGATCY | 1 cut(s) | 166 |
| BsuRI | GGCC | 1 cut(s) | 130 |
| BtsCI | GGATG | 3 cut(s) | 357, 366, 599 |
| Cac8I | GCNNGC | 1 cut(s) | 907 |
| Cfr13I | GGNCC | 1 cut(s) | 128 |
| Csp6I | GTAC | 1 cut(s) | 867 |
| CviAII | CATG | 6 cut(s) | 125, 347, 397, 542, 780, 817 |
| CviJI | RGCY | 8 cut(s) | 130, 246, 267, 319, 677, 690, 767, 812 |
| CviKI_1 | RGCY | 8 cut(s) | 130, 246, 267, 319, 677, 690, 767, 812 |
| CviQI | GTAC | 1 cut(s) | 867 |
| DdeI | CTNAG | 2 cut(s) | 522, 678 |
| DpnI | GATC | 6 cut(s) | 7, 163, 168, 176, 345, 480 |
| DpnII | GATC | 6 cut(s) | 5, 161, 166, 174, 343, 478 |
| Eam1104I | CTCTTC | 2 cut(s) | 426, 468 |
| EarI | CTCTTC | 2 cut(s) | 426, 468 |
| Eco24I | GRGCYC | 1 cut(s) | 769 |
| EcoT38I | GRGCYC | 1 cut(s) | 769 |
| FaeI | CATG | 6 cut(s) | 128, 350, 400, 545, 783, 820 |
| FaqI | GGGAC | 1 cut(s) | 377 |
| FatI | CATG | 6 cut(s) | 124, 346, 396, 541, 779, 816 |
| FauI | CCCGC | 1 cut(s) | 703 |
| FauNDI | CATATG | 1 cut(s) | 250 |
| Fnu4HI | GCNGC | 2 cut(s) | 268, 675 |
| FokI | GGATG | 3 cut(s) | 353, 364, 586 |
| FriOI | GRGCYC | 1 cut(s) | 769 |
| Fsp4HI | GCNGC | 2 cut(s) | 268, 675 |
| GluI | GCNGC | 2 cut(s) | 268, 675 |
| HaeIII | GGCC | 1 cut(s) | 130 |
| HapII | CCGG | 2 cut(s) | 327, 467 |
| Hin1II | CATG | 6 cut(s) | 128, 350, 400, 545, 783, 820 |
| HinfI | GANTC | 5 cut(s) | 236, 416, 422, 548, 752 |
| HpaII | CCGG | 2 cut(s) | 327, 467 |
| HphI | GGTGA | 1 cut(s) | 696 |
| Hpy166II | GTNNAC | 2 cut(s) | 777, 924 |
| Hpy188I | TCNGA | 8 cut(s) | 166, 371, 421, 427, 483, 553, 764, 825 |
| Hpy188III | TCNNGA | 2 cut(s) | 327, 467 |
| Hpy8I | GTNNAC | 2 cut(s) | 777, 924 |
| HpyAV | CCTTC | 5 cut(s) | 26, 40, 324, 394, 601 |
| HpyCH4III | ACNGT | 6 cut(s) | 285, 463, 713, 759, 774, 954 |
| HpyCH4IV | ACGT | 1 cut(s) | 134 |
| HpyCH4V | TGCA | 3 cut(s) | 87, 596, 931 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 915 |
| HpyF3I | CTNAG | 2 cut(s) | 522, 678 |
| HpySE526I | ACGT | 1 cut(s) | 134 |
| Hsp92II | CATG | 6 cut(s) | 128, 350, 400, 545, 783, 820 |
| Kpn2I | TCCGGA | 2 cut(s) | 326, 466 |
| Kzo9I | GATC | 6 cut(s) | 5, 161, 166, 174, 343, 478 |
| LmnI | GCTCC | 1 cut(s) | 637 |
| LpnPI | CCDG | 4 cut(s) | 62, 291, 340, 480 |
| Lsp1109I | GCAGC | 1 cut(s) | 254 |
| LweI | GCATC | 1 cut(s) | 605 |
| MaeII | ACGT | 1 cut(s) | 134 |
| MaeIII | GTNAC | 1 cut(s) | 574 |
| MalI | GATC | 6 cut(s) | 7, 163, 168, 176, 345, 480 |
| MboI | GATC | 6 cut(s) | 5, 161, 166, 174, 343, 478 |
| MflI | RGATCY | 1 cut(s) | 166 |
| MhlI | GDGCHC | 2 cut(s) | 653, 769 |
| MluCI | AATT | 6 cut(s) | 119, 150, 484, 583, 623, 632 |
| MlyI | GAGTC | 2 cut(s) | 245, 746 |
| MmeI | TCCRAC | 1 cut(s) | 43 |
| MroI | TCCGGA | 2 cut(s) | 326, 466 |
| MroXI | GAANNNNTTC | 2 cut(s) | 120, 855 |
| MseI | TTAA | 3 cut(s) | 68, 201, 446 |
| MslI | CAYNNNNRTG | 1 cut(s) | 952 |
| MspI | CCGG | 2 cut(s) | 327, 467 |
| MvnI | CGCG | 1 cut(s) | 674 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 915 |
| NdeI | CATATG | 1 cut(s) | 250 |
| NdeII | GATC | 6 cut(s) | 5, 161, 166, 174, 343, 478 |
| NlaIII | CATG | 6 cut(s) | 128, 350, 400, 545, 783, 820 |
| NlaIV | GGNNCC | 1 cut(s) | 761 |
| NmuCI | GTSAC | 1 cut(s) | 574 |
| NspI | RCATGY | 2 cut(s) | 783, 820 |
| NspV | TTCGAA | 1 cut(s) | 517 |
| PciI | ACATGT | 1 cut(s) | 816 |
| PdmI | GAANNNNTTC | 2 cut(s) | 120, 855 |
| PfeI | GAWTC | 3 cut(s) | 416, 422, 548 |
| PkrI | GCNGC | 2 cut(s) | 269, 676 |
| PleI | GAGTC | 2 cut(s) | 244, 746 |
| PpsI | GAGTC | 2 cut(s) | 244, 746 |
| PscI | ACATGT | 1 cut(s) | 816 |
| PshBI | ATTAAT | 1 cut(s) | 68 |
| PspN4I | GGNNCC | 1 cut(s) | 761 |
| PspPI | GGNCC | 1 cut(s) | 128 |
| PsuI | RGATCY | 1 cut(s) | 166 |
| RsaI | GTAC | 1 cut(s) | 868 |
| RsaNI | GTAC | 1 cut(s) | 867 |
| RseI | CAYNNNNRTG | 1 cut(s) | 952 |
| SaqAI | TTAA | 3 cut(s) | 68, 201, 446 |
| SatI | GCNGC | 2 cut(s) | 268, 675 |
| Sau3AI | GATC | 6 cut(s) | 5, 161, 166, 174, 343, 478 |
| Sau96I | GGNCC | 1 cut(s) | 128 |
| SchI | GAGTC | 2 cut(s) | 245, 746 |
| SduI | GDGCHC | 2 cut(s) | 653, 769 |
| SetI | ASST | 5 cut(s) | 137, 510, 668, 704, 936 |
| SfaNI | GCATC | 1 cut(s) | 605 |
| SfcI | CTRYAG | 2 cut(s) | 770, 840 |
| SfuI | TTCGAA | 1 cut(s) | 517 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 952 |
| Sse9I | AATT | 6 cut(s) | 119, 150, 484, 583, 623, 632 |
| SsiI | CCGC | 3 cut(s) | 674, 696, 707 |
| TaaI | ACNGT | 6 cut(s) | 285, 463, 713, 759, 774, 954 |
| TaiI | ACGT | 1 cut(s) | 137 |
| TaqI | TCGA | 3 cut(s) | 376, 517, 731 |
| TaqII | GACCGA | 1 cut(s) | 593 |
| TasI | AATT | 6 cut(s) | 119, 150, 484, 583, 623, 632 |
| TauI | GCSGC | 1 cut(s) | 677 |
| TfiI | GAWTC | 3 cut(s) | 416, 422, 548 |
| Tru1I | TTAA | 3 cut(s) | 68, 201, 446 |
| Tru9I | TTAA | 3 cut(s) | 68, 201, 446 |
| TseFI | GTSAC | 1 cut(s) | 574 |
| TseI | GCWGC | 1 cut(s) | 267 |
| Tsp45I | GTSAC | 1 cut(s) | 574 |
| TspDTI | ATGAA | 4 cut(s) | 113, 413, 465, 510 |
| TspGWI | ACGGA | 1 cut(s) | 592 |
| VspI | ATTAAT | 1 cut(s) | 68 |
| XapI | RAATTY | 2 cut(s) | 150, 583 |
| XceI | RCATGY | 2 cut(s) | 783, 820 |
| XmnI | GAANNNNTTC | 2 cut(s) | 120, 855 |