Rroxscaffold_5G00349480

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000100
Physical Location & Seq
Forward (+)
22505238 .. 22506125
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349480.1

Sequence Viewer

Length: 570 bp
ATGGGCCAACTAAAAAGAAAACAAAGTGAGGAATCGGAGAAGAACAATCGAAGAACAAAGTCCAGAAGAAACAATTGGGGAAAAGTTGAAACTGATAAAATGGAAGAAAGTAAAAGAGAGAAAAATGGGAAAGCGAAAAACGAAGATGAAGAAGAATCAAGTGAAGATGAGAAAAGAACAACCGAAGATGAAGAAGAATCGATGAAGAACAAGTCCGGTATCGTTGCACAATGCTTGCTTTTCGAAAACAATTGCGAGAAAACAAAAATAACTCCGATCGAAGGGACTTTAGAGCTGCTGCAGAAAACACCCTTTGCAACGTTGATAGAGGCATTCCATGGAGGTTCAATTAAAGAAAAGGATGCAAAGAAATCAGATGATTTAATCACACTTCTACTACAAGCATACGACAGCGACACATACCTTTTTGTGTTTGGGAACAGGAAATTCGAATGTCAACAAGTTATATCTATGATTTTAGAAGTGCGGGATCCGGGTTATCGGTACCAAAGACCAAAGAAGGGGGCATACAGATCTGAGTTTGTGACTAAATACTTTGACAAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

189

Amino Acids

22.1

Weight (kDa)

7.6

Isoelectric Point (pI)

60.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 504
AciI CCGC 1 cut(s) 487
AclI AACGTT 1 cut(s) 320
AclWI GGATC 2 cut(s) 485, 498
AcsI RAATTY 1 cut(s) 446
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 2 cut(s) 281, 521
AgsI TTSAA 2 cut(s) 89, 348
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
AlwI GGATC 2 cut(s) 485, 498
AoxI GGCC 1 cut(s) 4
ApeKI GCWGC 2 cut(s) 295, 298
ApoI RAATTY 1 cut(s) 446
Asp718I GGTACC 1 cut(s) 504
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 495
AsuII TTCGAA 2 cut(s) 243, 450
BamHI GGATCC 1 cut(s) 490
BanI GGYRCC 1 cut(s) 504
BarI GAAGNNNNNNTAC 2 cut(s) 512, 544
BbvI GCAGC 2 cut(s) 282, 285
BcnI CCSGG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 299
BglII AGATCT 1 cut(s) 533
BisI GCNGC 2 cut(s) 296, 299
BlsI GCNGC 2 cut(s) 297, 300
Bme1390I CCNGG 1 cut(s) 495
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 492, 506
BmrFI CCNGG 1 cut(s) 495
BmsI GCATC 1 cut(s) 352
Bpu14I TTCGAA 2 cut(s) 243, 450
BpuMI CCSGG 1 cut(s) 495
Bsa29I ATCGAT 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 337
BsaWI WCCGGW 1 cut(s) 215
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 521
BseCI ATCGAT 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 337
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 2 cut(s) 281, 521
BseMII CTCAG 1 cut(s) 528
BseXI GCAGC 2 cut(s) 282, 285
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 1 cut(s) 6
BshNI GGYRCC 1 cut(s) 504
BshVI ATCGAT 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 279
BsiSI CCGG 2 cut(s) 216, 494
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 281, 521
BsmFI GGGAC 1 cut(s) 298
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 1 cut(s) 6
Bsp119I TTCGAA 2 cut(s) 243, 450
Bsp143I GATC 3 cut(s) 276, 490, 533
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 1 cut(s) 487
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 529
BspDI ATCGAT 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 492, 506
BspMAI CTGCAG 1 cut(s) 303
BspPI GGATC 2 cut(s) 485, 498
BspT104I TTCGAA 2 cut(s) 243, 450
BspT107I GGYRCC 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 3 cut(s) 276, 490, 533
BssT1I CCWWGG 1 cut(s) 337
BstBI TTCGAA 2 cut(s) 243, 450
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 537
BstDSI CCRYGG 1 cut(s) 337
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 3 cut(s) 279, 493, 536
BstMBI GATC 3 cut(s) 276, 490, 533
BstMCI CGRYCG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 493
BstSFI CTRYAG 1 cut(s) 299
BstV1I GCAGC 2 cut(s) 282, 285
BstX2I RGATCY 2 cut(s) 490, 533
BstYI RGATCY 2 cut(s) 490, 533
Bsu15I ATCGAT 1 cut(s) 200
BsuRI GGCC 1 cut(s) 6
BsuTUI ATCGAT 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 337
BtsCI GGATG 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 200
Csp6I GTAC 1 cut(s) 505
CviAII CATG 1 cut(s) 338
CviJI RGCY 2 cut(s) 6, 295
CviKI_1 RGCY 2 cut(s) 6, 295
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 1 cut(s) 537
DpnI GATC 3 cut(s) 278, 492, 535
DpnII GATC 3 cut(s) 276, 490, 533
Eco130I CCWWGG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 337
FaeI CATG 1 cut(s) 341
FaiI YATR 6 cut(s) 339, 406, 421, 467, 473, 529
FaqI GGGAC 1 cut(s) 298
FatI CATG 1 cut(s) 337
FauI CCCGC 1 cut(s) 480
Fnu4HI GCNGC 2 cut(s) 296, 299
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 296, 299
GluI GCNGC 2 cut(s) 296, 299
HaeIII GGCC 1 cut(s) 6
HapII CCGG 2 cut(s) 216, 494
Hin1II CATG 1 cut(s) 341
HincII GTYRAC 1 cut(s) 458
HindII GTYRAC 1 cut(s) 458
HinfI GANTC 3 cut(s) 32, 155, 197
HpaII CCGG 2 cut(s) 216, 494
Hpy166II GTNNAC 1 cut(s) 458
Hpy188I TCNGA 4 cut(s) 37, 276, 376, 538
Hpy188III TCNNGA 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 458
HpyAV CCTTC 2 cut(s) 275, 514
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 4 cut(s) 227, 301, 317, 365
HpyF3I CTNAG 1 cut(s) 537
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 1 cut(s) 341
KpnI GGTACC 1 cut(s) 508
Kzo9I GATC 3 cut(s) 276, 490, 533
LpnPI CCDG 4 cut(s) 76, 229, 427, 507
Lsp1109I GCAGC 2 cut(s) 282, 285
LweI GCATC 1 cut(s) 352
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 544
MalI GATC 3 cut(s) 278, 492, 535
MboI GATC 3 cut(s) 276, 490, 533
MfeI CAATTG 2 cut(s) 73, 250
MflI RGATCY 2 cut(s) 490, 533
MluCI AATT 4 cut(s) 73, 250, 348, 446
MnlI CCTC 3 cut(s) 22, 322, 335
MseI TTAA 2 cut(s) 351, 383
MspI CCGG 2 cut(s) 216, 494
MspR9I CCNGG 1 cut(s) 495
MunI CAATTG 2 cut(s) 73, 250
Mva1269I GAATGC 1 cut(s) 332
NciI CCSGG 1 cut(s) 495
NcoI CCATGG 1 cut(s) 337
NdeII GATC 3 cut(s) 276, 490, 533
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 2 cut(s) 492, 506
NmuCI GTSAC 1 cut(s) 544
NspV TTCGAA 2 cut(s) 243, 450
PctI GAATGC 1 cut(s) 332
PfeI GAWTC 3 cut(s) 32, 155, 197
PkrI GCNGC 2 cut(s) 297, 300
Ple19I CGATCG 1 cut(s) 279
Psp1406I AACGTT 1 cut(s) 320
PspN4I GGNNCC 2 cut(s) 492, 506
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 303
PsuI RGATCY 2 cut(s) 490, 533
PvuI CGATCG 1 cut(s) 279
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
SaqAI TTAA 2 cut(s) 351, 383
SatI GCNGC 2 cut(s) 296, 299
Sau3AI GATC 3 cut(s) 276, 490, 533
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 495
SetI ASST 4 cut(s) 297, 323, 346, 426
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 299
SfuI TTCGAA 2 cut(s) 243, 450
Sse9I AATT 4 cut(s) 73, 250, 348, 446
SsiI CCGC 1 cut(s) 487
StyD4I CCNGG 1 cut(s) 493
StyI CCWWGG 1 cut(s) 337
TaiI ACGT 1 cut(s) 323
TaqI TCGA 5 cut(s) 49, 200, 243, 279, 450
TasI AATT 4 cut(s) 73, 250, 348, 446
TfiI GAWTC 3 cut(s) 32, 155, 197
Tru1I TTAA 2 cut(s) 351, 383
Tru9I TTAA 2 cut(s) 351, 383
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 2 cut(s) 295, 298
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 3 cut(s) 162, 204, 218
XapI RAATTY 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.