Rroxscaffold_6G00415310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000100
Physical Location & Seq
Forward (+)
37520698 .. 37521357
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00415310.1

Sequence Viewer

Length: 555 bp
ATGGAGAAAGATAATTTGCAGCAAAAACCGAAGGAAAAGGAACTGAAACTAAGGAAATTCATGGAGGACGAGAGGAATGAAATGCTACACTTCTCCCCACCTCCTAACTTAATAGAAGAAAATAATGTATCAAATACAACCGCATCTAAGGCCGCCGAGAACACGAAAAGAGAGATCAATCAACTGTTGAGGAAGGTCGGTCCTAAGGGATCTTCACATTTGAAGAATCCGCAACCACGGCAATTCAATCTCCACCTCCTGCACGGTGGCAAAAGAAAGTCAATGGACACCTCCATTACAAAAGGACTCACCGTTCCAGGCCCAATAGTCCGCATGCTCACGGTCGAAGAAATGGAAAAACAACTTGACATGTTTCGTATAGTGAAAAGTCTTATAGCTACGCGTGGCTTTCCGCTTCGTACGTTGAGCCCGAGAGAAAGAGCGAGAAGACACCGAGAGGATAACAAAAAAGGGCGAGTTAACAATGCGCCTTACGAGCAACATTCGGTGAAACGGTATCATCAATGGGTCTCTACTCATATGTCGTCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

21.45

Weight (kDa)

10.19

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 403
AciI CCGC 5 cut(s) 141, 153, 230, 331, 413
AclWI GGATC 1 cut(s) 217
AcsI RAATTY 1 cut(s) 56
AfaI GTAC 1 cut(s) 421
AflIII ACRYGT 2 cut(s) 369, 401
AgsI TTSAA 2 cut(s) 223, 247
AjnI CCWGG 1 cut(s) 316
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw26I GTCTC 1 cut(s) 535
AlwI GGATC 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 430
AoxI GGCC 2 cut(s) 150, 319
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 56
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 2 cut(s) 200, 320
AsuHPI GGTGA 2 cut(s) 301, 520
AvaI CYCGRG 1 cut(s) 430
AvaII GGWCC 1 cut(s) 200
AxyI CCTNAGG 1 cut(s) 204
BanII GRGCYC 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 454
BbvI GCAGC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 535
BisI GCNGC 2 cut(s) 20, 153
BlsI GCNGC 2 cut(s) 21, 154
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 430
BmgT120I GGNCC 2 cut(s) 200, 320
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 454
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 1 cut(s) 236
Bse21I CCTNAGG 1 cut(s) 204
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 403
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 2 cut(s) 152, 321
BsiEI CGRYCG 1 cut(s) 345
BsiHKCI CYCGRG 1 cut(s) 430
BsiWI CGTACG 1 cut(s) 419
BsmAI GTCTC 1 cut(s) 535
BsnI GGCC 2 cut(s) 152, 321
Bso31I GGTCTC 1 cut(s) 535
BsoBI CYCGRG 1 cut(s) 430
Bsp1286I GDGCHC 1 cut(s) 431
Bsp143I GATC 2 cut(s) 174, 209
BspACI CCGC 5 cut(s) 141, 153, 230, 331, 413
BspANI GGCC 2 cut(s) 152, 321
BspFNI CGCG 1 cut(s) 403
BspPI GGATC 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 535
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 2 cut(s) 174, 209
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 5 cut(s) 186, 266, 313, 343, 516
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 3 cut(s) 50, 147, 204
BstDSI CCRYGG 1 cut(s) 236
BstFNI CGCG 1 cut(s) 403
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 2 cut(s) 177, 212
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 2 cut(s) 174, 209
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 3 cut(s) 149, 238, 496
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 2 cut(s) 337, 373
BstSCI CCNGG 1 cut(s) 316
BstUI CGCG 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 454
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 204
BsuRI GGCC 2 cut(s) 152, 321
BtgI CCRYGG 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 335
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 2 cut(s) 200, 320
Csp6I GTAC 1 cut(s) 420
CviAII CATG 3 cut(s) 61, 334, 370
CviJI RGCY 5 cut(s) 152, 321, 398, 408, 429
CviKI_1 RGCY 5 cut(s) 152, 321, 398, 408, 429
CviQI GTAC 1 cut(s) 420
DdeI CTNAG 3 cut(s) 50, 147, 204
DpnI GATC 2 cut(s) 176, 211
DpnII GATC 2 cut(s) 174, 209
Eco24I GRGCYC 1 cut(s) 431
Eco31I GGTCTC 1 cut(s) 535
Eco47I GGWCC 1 cut(s) 200
Eco81I CCTNAGG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 431
FaeI CATG 3 cut(s) 64, 337, 373
FaiI YATR 7 cut(s) 62, 335, 371, 380, 395, 540, 542
FatI CATG 3 cut(s) 60, 333, 369
FauNDI CATATG 1 cut(s) 540
Fnu4HI GCNGC 2 cut(s) 20, 153
FriOI GRGCYC 1 cut(s) 431
Fsp4HI GCNGC 2 cut(s) 20, 153
GlaI GCGC 1 cut(s) 489
GluI GCNGC 2 cut(s) 20, 153
HaeIII GGCC 2 cut(s) 152, 321
HhaI GCGC 1 cut(s) 490
Hin1II CATG 3 cut(s) 64, 337, 373
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HinfI GANTC 2 cut(s) 226, 306
HpaI GTTAAC 1 cut(s) 481
HphI GGTGA 2 cut(s) 301, 520
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 1 cut(s) 550
Hpy8I GTNNAC 1 cut(s) 481
Hpy99I CGWCG 1 cut(s) 550
HpyAV CCTTC 2 cut(s) 25, 187
HpyCH4III ACNGT 5 cut(s) 186, 266, 313, 343, 516
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 2 cut(s) 19, 262
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 238, 496
HpyF3I CTNAG 3 cut(s) 50, 147, 204
HpySE526I ACGT 1 cut(s) 422
Hsp92II CATG 3 cut(s) 64, 337, 373
HspAI GCGC 1 cut(s) 488
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 2 cut(s) 174, 209
LpnPI CCDG 3 cut(s) 272, 303, 330
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 152
MaeII ACGT 1 cut(s) 422
MalI GATC 2 cut(s) 176, 211
MboI GATC 2 cut(s) 174, 209
MboII GAAGA 5 cut(s) 128, 204, 235, 359, 459
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 3 cut(s) 13, 56, 242
MluI ACGCGT 1 cut(s) 401
MlyI GAGTC 1 cut(s) 300
MmeI TCCRAC 1 cut(s) 528
MnlI CCTC 7 cut(s) 58, 66, 111, 183, 266, 301, 451
MseI TTAA 2 cut(s) 110, 480
MspR9I CCNGG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 1 cut(s) 403
MwoI GCNNNNNNNGC 3 cut(s) 149, 238, 496
NdeI CATATG 1 cut(s) 540
NdeII GATC 2 cut(s) 174, 209
NlaIII CATG 3 cut(s) 64, 337, 373
NmeAIII GCCGAG 1 cut(s) 181
NspI RCATGY 2 cut(s) 337, 373
PaeI GCATGC 1 cut(s) 337
PciI ACATGT 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PfeI GAWTC 1 cut(s) 226
Pfl23II CGTACG 1 cut(s) 419
PkrI GCNGC 2 cut(s) 21, 154
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PscI ACATGT 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspLI CGTACG 1 cut(s) 419
PspPI GGNCC 2 cut(s) 200, 320
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
SaqAI TTAA 2 cut(s) 110, 480
SatI GCNGC 2 cut(s) 20, 153
Sau3AI GATC 2 cut(s) 174, 209
Sau96I GGNCC 2 cut(s) 200, 320
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 1 cut(s) 431
SetI ASST 6 cut(s) 103, 198, 258, 293, 400, 425
SfaNI GCATC 1 cut(s) 152
SinI GGWCC 1 cut(s) 200
SphI GCATGC 1 cut(s) 337
Sse9I AATT 3 cut(s) 13, 56, 242
SsiI CCGC 5 cut(s) 141, 153, 230, 331, 413
StyD4I CCNGG 1 cut(s) 316
TaaI ACNGT 5 cut(s) 186, 266, 313, 343, 516
TaiI ACGT 1 cut(s) 425
TaqI TCGA 1 cut(s) 345
TaqII GACCGA 1 cut(s) 188
TasI AATT 3 cut(s) 13, 56, 242
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 2 cut(s) 110, 480
Tru9I TTAA 2 cut(s) 110, 480
TseI GCWGC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 49, 93
VpaK11BI GGWCC 1 cut(s) 200
XapI RAATTY 1 cut(s) 56
XceI RCATGY 2 cut(s) 337, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.