Rmu_sc0003880.1_g000043

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003880.1
OG0000100
Physical Location & Seq
Reverse (-)
208685 .. 209689
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003880.1_g000043.1.cds

Sequence Viewer

Length: 537 bp
atgccctcaaaagacaagtcaacaacaaaggaagggattgagaagaaggacaaaaatgtggcaagattaatcttgttggacttgtcaatcaagtttatgtacccaaatgcagggggaacaatttcatgggactacatcaaggcctgcgaaaatttggataaaattggatcttatgactgggcaaaggaagctggaaatttctttaaaaagtttatgaagactttgaaaaagaagcagtcaaacaccggtgcatatactaatatgggggactgcgttaaaatatttgaaaagctgaaggatggagtgcaaatagaatttgaggaagaggagactagttctgatgaagagaagacagcttcgcaacaagaggaacaaggagatgatgatcagacttctgaagaggaagaggataatgtagaagctgaggtggctgaacagggagcaactgagatgacaaaaacaaggtccagcaaacaagaaaaagacatgtgggagaaacagcttcaaaaaaaaaacgaggaggagataaatgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

178

Amino Acids

20.41

Weight (kDa)

4.67

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 3 cut(s) 151, 196, 314
AcuI CTGAAG 2 cut(s) 314, 417
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 486
AgeI ACCGGT 1 cut(s) 245
AgsI TTSAA 3 cut(s) 226, 287, 506
AhlI ACTAGT 1 cut(s) 332
AluBI AGCT 5 cut(s) 191, 292, 356, 422, 502
AluI AGCT 5 cut(s) 191, 292, 356, 422, 502
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 1 cut(s) 175
AoxI GGCC 1 cut(s) 141
ApoI RAATTY 3 cut(s) 151, 196, 314
ArsI GACNNNNNNTTYG 3 cut(s) 34, 449, 481
AseI ATTAAT 1 cut(s) 68
AsiGI ACCGGT 1 cut(s) 245
Asp700I GAANNNNTTC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 465
AvaII GGWCC 1 cut(s) 465
BbsI GAAGAC 2 cut(s) 224, 356
BbvCI CCTCAGC 1 cut(s) 423
BccI CCATC 1 cut(s) 293
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 323
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 465
BmrI ACTGGG 1 cut(s) 187
BmuI ACTGGG 1 cut(s) 187
BpiI GAAGAC 2 cut(s) 224, 356
Bpu10I CCTNAGC 1 cut(s) 423
BsaBI GATNNNNATC 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 384
BseGI GGATG 1 cut(s) 304
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 414, 438
BseNI ACTGG 1 cut(s) 182
BseRI GAGGAG 3 cut(s) 341, 533, 536
BshFI GGCC 1 cut(s) 143
BshTI ACCGGT 1 cut(s) 245
BsiSI CCGG 1 cut(s) 246
BslFI GGGAC 2 cut(s) 143, 281
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 323
BsmFI GGGAC 2 cut(s) 143, 281
BsnI GGCC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 167, 385
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 2 cut(s) 415, 439
BspPI GGATC 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 245
BssMI GATC 2 cut(s) 167, 385
Bst6I CTCTTC 4 cut(s) 318, 339, 393, 399
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 423, 447
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 2 cut(s) 170, 388
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 2 cut(s) 167, 385
BstMWI GCNNNNNNNGC 2 cut(s) 188, 428
BstNSI RCATGY 1 cut(s) 490
BstV2I GAAGAC 2 cut(s) 224, 356
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 465
Csp6I GTAC 1 cut(s) 100
CspAI ACCGGT 1 cut(s) 245
CviAII CATG 2 cut(s) 126, 487
CviJI RGCY 7 cut(s) 143, 191, 292, 356, 422, 431, 502
CviKI_1 RGCY 7 cut(s) 143, 191, 292, 356, 422, 431, 502
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 2 cut(s) 423, 447
DpnI GATC 2 cut(s) 169, 387
DpnII GATC 2 cut(s) 167, 385
DraI TTTAAA 1 cut(s) 205
Eam1104I CTCTTC 4 cut(s) 318, 339, 393, 399
EarI CTCTTC 4 cut(s) 318, 339, 393, 399
Eco147I AGGCCT 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 465
Eco57I CTGAAG 2 cut(s) 314, 417
FaeI CATG 2 cut(s) 129, 490
FaiI YATR 8 cut(s) 98, 127, 174, 215, 253, 255, 263, 488
FaqI GGGAC 2 cut(s) 143, 281
FatI CATG 2 cut(s) 125, 486
FbaI TGATCA 1 cut(s) 385
FokI GGATG 1 cut(s) 311
FspBI CTAG 1 cut(s) 333
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 246
Hin1II CATG 2 cut(s) 129, 490
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HpaII CCGG 1 cut(s) 246
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 4 cut(s) 340, 390, 397, 536
Hpy8I GTNNAC 1 cut(s) 21
HpyAV CCTTC 3 cut(s) 26, 40, 289
HpyCH4V TGCA 3 cut(s) 110, 251, 307
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 428
HpyF3I CTNAG 2 cut(s) 423, 447
Hsp92II CATG 2 cut(s) 129, 490
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 2 cut(s) 167, 385
LmnI GCTCC 1 cut(s) 440
LpnPI CCDG 7 cut(s) 96, 157, 163, 177, 259, 422, 481
MaeI CTAG 1 cut(s) 333
MalI GATC 2 cut(s) 169, 387
MboI GATC 2 cut(s) 167, 385
MboII GAAGA 7 cut(s) 55, 229, 335, 356, 361, 410, 416
MflI RGATCY 1 cut(s) 167
MluCI AATT 5 cut(s) 120, 151, 162, 196, 314
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 9 cut(s) 16, 313, 319, 361, 394, 400, 418, 511, 514
MroXI GAANNNNTTC 1 cut(s) 121
MseI TTAA 3 cut(s) 68, 204, 276
MspI CCGG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 188, 428
NdeII GATC 2 cut(s) 167, 385
NlaIII CATG 2 cut(s) 129, 490
NspI RCATGY 1 cut(s) 490
PceI AGGCCT 1 cut(s) 143
PciI ACATGT 1 cut(s) 486
PdmI GAANNNNTTC 1 cut(s) 121
PinAI ACCGGT 1 cut(s) 245
PscI ACATGT 1 cut(s) 486
PshBI ATTAAT 1 cut(s) 68
PspPI GGNCC 1 cut(s) 465
PsuI RGATCY 1 cut(s) 167
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 3 cut(s) 68, 204, 276
Sau3AI GATC 2 cut(s) 167, 385
Sau96I GGNCC 1 cut(s) 465
SetI ASST 7 cut(s) 193, 294, 358, 424, 429, 467, 504
SgrAI CRCCGGYG 1 cut(s) 245
SinI GGWCC 1 cut(s) 465
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 5 cut(s) 120, 151, 162, 196, 314
SseBI AGGCCT 1 cut(s) 143
SspI AATATT 1 cut(s) 282
SspMI CTAG 1 cut(s) 333
StuI AGGCCT 1 cut(s) 143
TasI AATT 5 cut(s) 120, 151, 162, 196, 314
Tru1I TTAA 3 cut(s) 68, 204, 276
Tru9I TTAA 3 cut(s) 68, 204, 276
TspDTI ATGAA 3 cut(s) 114, 230, 357
VpaK11BI GGWCC 1 cut(s) 465
VspI ATTAAT 1 cut(s) 68
XapI RAATTY 3 cut(s) 151, 196, 314
XceI RCATGY 1 cut(s) 490
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.