Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000100

Physical Location & Seq

Genomic Coordinates Reverse (-)

26727421 .. 26728808

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00021720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGGAGGGCAAATATCTCGTCTTATGAAGATTTGTGAGGCTTTTCTTCCGAATGGTGAACATGATCTCTTAACATTTCTACTGGTGGATTTGGGAATAGTCAAGTATCCAACTTACAAGTGCATAGTCTCACAACAAATTTTCTCAGCTCGAGATGATTTGCTTGGCTATGAAGAGGGAGATGCATATTATGAAGAGCAAGTGGAAACAGTGATTCACCAAATGCTTCAGCAGTTCCATGTACTTGGAGAAGGGGTGCATTATTGGATGAACATACAGCAGAACAAACTTTTGGCAATAAAGGATTGCAAGCTATTGGTCAGCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

109

Amino Acids

12.57

Weight (kDa)

5.18

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000100)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0248691
rosa_multiflora	Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii	Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa	Rorug03G0270600 Rorug05G0169200
rosa_samantha	Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana	Rw5G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AluBI	AGCT	2 cut(s)	149, 313
AluI	AGCT	2 cut(s)	149, 313
Alw26I	GTCTC	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	138
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	68, 209
AvaI	CYCGRG	1 cut(s)	150
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciVI	GTATCC	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	133
BfuI	GTATCC	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bse1I	ACTGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	133
BsoBI	CYCGRG	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	2 cut(s)	168, 189
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	273
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	245
BsuI	GTATCC	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	2 cut(s)	62, 239
CviJI	RGCY	5 cut(s)	41, 149, 168, 313, 324
CviKI_1	RGCY	5 cut(s)	41, 149, 168, 313, 324
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	2 cut(s)	168, 189
EarI	CTCTTC	2 cut(s)	168, 189
Eco57I	CTGAAG	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	187
FaeI	CATG	2 cut(s)	65, 242
FaiI	YATR	8 cut(s)	26, 63, 125, 171, 187, 192, 240, 275
FatI	CATG	2 cut(s)	61, 238
FokI	GGATG	1 cut(s)	280
Hin1II	CATG	2 cut(s)	65, 242
HinfI	GANTC	1 cut(s)	214
HphI	GGTGA	2 cut(s)	68, 209
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	4 cut(s)	123, 185, 259, 309
HpyF3I	CTNAG	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	65, 242
Kzo9I	GATC	1 cut(s)	64
LguI	GCTCTTC	1 cut(s)	189
LpnPI	CCDG	1 cut(s)	68
LweI	GCATC	1 cut(s)	172
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	4 cut(s)	38, 40, 185, 206
MluCI	AATT	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	2 cut(s)	31, 169
Mph1103I	ATGCAT	1 cut(s)	187
MseI	TTAA	1 cut(s)	71
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	65, 242
NsiI	ATGCAT	1 cut(s)	187
PaeR7I	CTCGAG	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	214
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	71
Sau3AI	GATC	1 cut(s)	64
SetI	ASST	2 cut(s)	151, 315
SfaNI	GCATC	1 cut(s)	172
Sfr274I	CTCGAG	1 cut(s)	150
SlaI	CTCGAG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	151
TasI	AATT	1 cut(s)	138
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	1 cut(s)	216
TspDTI	ATGAA	4 cut(s)	41, 186, 207, 284
TspRI	CASTG	1 cut(s)	216
XapI	RAATTY	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.