Rroxscaffold_6G00390400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000100
Physical Location & Seq
Forward (+)
5402100 .. 5407697
5598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390400.1

Sequence Viewer

Length: 1485 bp
ATGAAGGAGGATAGAGAGGAATCAGAATTGGAGGAAGAGGATAATAGATTAGATGAAGCAAAGACAGTTCCGGAAGAAGAGGATCAGAATTGTGAAAATAAAGAAGATAACCTACAAGTTCGGTGGGAGAAAGAGCTTCAGCAAAAGGAGGAGGATATAAGATATATGACTGTGGAGAAAGATAATTTGAAGAAAAAACTGAACGAAAAGGAACAGGAACTAAGGATAATCAAGGAGGACATGGTGAATGCGGAGGAACGAAATGCTACACTTGTGACCGAGAATTTCTGCCTTGCATCATCTGTGAAGGAGTTAGAGATAAAATTGAAAGAATTGGAGCAAATGTTGAGCACAAAGACTCACACCTCAACAGCGGCTCGGCAGCACAGCTCCCCGCCACCTCACCCGCACGATGGTAGCACAACGAAGTTGGACGATTTACCGAGAGGATGTTCGCAAGCAATAAGAGAGCTGGACGATGCAGAAAATGCACAAATCAATAAAGAGCCGAACAGAAACAGCTACCTCCGAGGTTGTAGGCGGGAAGAGAGCAAAGTGTACAATTTTATGGACCAAGACACCAAGAGCGAGTCCGAAATACGGCAAAATGCACCATCGGGATTGGATTGCGGACTTTTTGTAATGTACACAATGGAGAAAATTTCGAAAAAAGAGAGAGTTCCAAAGAAGCTCACAAAGGATGATATTTTGAATTTTAGAGCTCATGTTGTAAAGTCATTTGCAGAAAGTAGGCACAGCTGGAACTCAACACATGAAGAATCAAGAATCGATGAAGAACAAGTCCAGGGTAAGGACACAAAGAAAGATAGAAAGAAGAAAACTGGAAACCGAGAAAAGAAAAAACTGGAAGGAACTGAAGATGAAGAAGAATCTAATGAAGAGCAAGTCTGCAGTAAGAAGAAGAATAAGGATAAAAAGGAGAAAACTAAAAAGGAGAAAAGAAGAAACAACGAAGAAACTGAAGATGAAGAAGAAGTTCGTGCAAAGAAGAAGAAGAAAATGGATAAAAGGAAGACAAAAAAAGAAAGTGCAAAGAAGAAGGAAGAAACCGACGAGGAAGAAGATACAAAAGATGATGAAGAGGAAAAAGTCCCAGCGAAGAGAAAAAGATATGTAAAAGAGGTGCCGGAATCCGGGTTATCGGTACCAAAGACCAAAGAAGGGGCATACAGATCTGAGTTCGTGACTAAATACTTTGACAAAAAGCGAGAGGATCAACAAGGCGGCTGCAGAGGAAGCTTTGAAGAAGGCATTGGCAAAAACTCCGGAAACGAGGAGAAGAAAAAACGAAACGGGACGAAATGTTGTTGTATTAGTACTCTTGAACCTTTTCATCAAACTCATGTTCCCAAACTCGGAGGAACAATATCTTGGGATTATATAAGAGTACGTGAAGAGTTGGAAAGTACGGGAAAATATAGCTGGGCAAAGGAAGTTGGCGACTTCCTTAAAAAAATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

494

Amino Acids

57.83

Weight (kDa)

6.08

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1165
AccB1I GGYRCC 2 cut(s) 1144, 1165
AccIII TCCGGA 2 cut(s) 70, 1286
AciI CCGC 7 cut(s) 251, 374, 395, 407, 541, 630, 1245
AclWI GGATC 2 cut(s) 90, 1242
AcsI RAATTY 3 cut(s) 283, 660, 712
AcuI CTGAAG 3 cut(s) 122, 897, 1002
AfaI GTAC 6 cut(s) 560, 647, 1167, 1339, 1410, 1429
AfiI CCNNNNNNNGG 6 cut(s) 413, 600, 811, 1154, 1182, 1376
AgsI TTSAA 5 cut(s) 190, 328, 712, 1265, 1346
AjnI CCWGG 1 cut(s) 804
AjuI GAANNNNNNNTTGG 4 cut(s) 1257, 1289, 1375, 1407
AluBI AGCT 9 cut(s) 136, 390, 472, 522, 691, 722, 759, 1260, 1443
AluI AGCT 9 cut(s) 136, 390, 472, 522, 691, 722, 759, 1260, 1443
Alw21I GWGCWC 2 cut(s) 353, 724
AlwI GGATC 2 cut(s) 90, 1242
Aor13HI TCCGGA 2 cut(s) 70, 1286
ApeKI GCWGC 2 cut(s) 382, 1248
ApoI RAATTY 3 cut(s) 283, 660, 712
Asp700I GAANNNNTTC 2 cut(s) 996, 1350
Asp718I GGTACC 1 cut(s) 1165
AspS9I GGNCC 1 cut(s) 571
AsuC2I CCSGG 1 cut(s) 1156
AsuHPI GGTGA 2 cut(s) 256, 395
AsuII TTCGAA 1 cut(s) 665
AvaII GGWCC 1 cut(s) 571
BanI GGYRCC 2 cut(s) 1144, 1165
BanII GRGCYC 1 cut(s) 724
BarI GAAGNNNNNNTAC 2 cut(s) 96, 128
BbsI GAAGAC 1 cut(s) 1040
Bbv12I GWGCWC 2 cut(s) 353, 724
BbvI GCAGC 2 cut(s) 394, 1235
BccI CCATC 2 cut(s) 407, 622
BceAI ACGGC 1 cut(s) 617
BciT130I CCWGG 1 cut(s) 806
BcnI CCSGG 1 cut(s) 1156
BfmI CTRYAG 2 cut(s) 910, 1249
BglII AGATCT 1 cut(s) 1193
BisI GCNGC 4 cut(s) 375, 383, 1246, 1249
BlsI GCNGC 4 cut(s) 376, 384, 1247, 1250
BmcAI AGTACT 1 cut(s) 1339
Bme1390I CCNGG 2 cut(s) 806, 1156
Bme18I GGWCC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 571
BmiI GGNNCC 2 cut(s) 1146, 1167
BmrFI CCNGG 2 cut(s) 806, 1156
BmsI GCATC 2 cut(s) 305, 469
BpiI GAAGAC 1 cut(s) 1040
Bpu14I TTCGAA 1 cut(s) 665
BpuMI CCSGG 1 cut(s) 1156
Bsa29I ATCGAT 1 cut(s) 789
BsaAI YACGTR 1 cut(s) 1412
BsaJI CCNNGG 2 cut(s) 529, 805
BsaWI WCCGGW 2 cut(s) 70, 1286
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 6 cut(s) 413, 600, 811, 1154, 1182, 1376
Bse1I ACTGG 2 cut(s) 847, 870
BseAI TCCGGA 2 cut(s) 70, 1286
BseBI CCWGG 1 cut(s) 806
BseCI ATCGAT 1 cut(s) 789
BseDI CCNNGG 2 cut(s) 529, 805
BseGI GGATG 2 cut(s) 455, 706
BseLI CCNNNNNNNGG 6 cut(s) 413, 600, 811, 1154, 1182, 1376
BseMII CTCAG 1 cut(s) 1188
BseNI ACTGG 2 cut(s) 847, 870
BseRI GAGGAG 2 cut(s) 164, 1310
BseXI GCAGC 2 cut(s) 394, 1235
BseYI CCCAGC 2 cut(s) 1114, 1443
BshNI GGYRCC 2 cut(s) 1144, 1165
BshVI ATCGAT 1 cut(s) 789
BsiHKAI GWGCWC 2 cut(s) 353, 724
BsiSI CCGG 4 cut(s) 71, 1148, 1155, 1287
BslFI GGGAC 2 cut(s) 1097, 1330
BslI CCNNNNNNNGG 6 cut(s) 413, 600, 811, 1154, 1182, 1376
BsmFI GGGAC 2 cut(s) 1097, 1330
BsmI GAATGC 1 cut(s) 253
Bsp119I TTCGAA 1 cut(s) 665
Bsp1286I GDGCHC 2 cut(s) 353, 724
Bsp13I TCCGGA 2 cut(s) 70, 1286
Bsp1407I TGTACA 2 cut(s) 558, 645
Bsp143I GATC 3 cut(s) 82, 1193, 1234
BspACI CCGC 7 cut(s) 251, 374, 395, 407, 541, 630, 1245
BspCNI CTCAG 1 cut(s) 1189
BspDI ATCGAT 1 cut(s) 789
BspEI TCCGGA 2 cut(s) 70, 1286
BspLI GGNNCC 2 cut(s) 1146, 1167
BspMAI CTGCAG 2 cut(s) 914, 1253
BspPI GGATC 2 cut(s) 90, 1242
BspQI GCTCTTC 1 cut(s) 894
BspT104I TTCGAA 1 cut(s) 665
BspT107I GGYRCC 2 cut(s) 1144, 1165
BsrGI TGTACA 2 cut(s) 558, 645
BsrI ACTGG 2 cut(s) 847, 870
BssECI CCNNGG 2 cut(s) 529, 805
BssMI GATC 3 cut(s) 82, 1193, 1234
Bst2UI CCWGG 1 cut(s) 806
Bst4CI ACNGT 2 cut(s) 67, 172
Bst6I CTCTTC 7 cut(s) 30, 72, 540, 894, 1095, 1115, 1410
BstAPI GCANNNNNTGC 1 cut(s) 488
BstAUI TGTACA 2 cut(s) 558, 645
BstBAI YACGTR 1 cut(s) 1412
BstBI TTCGAA 1 cut(s) 665
BstC8I GCNNGC 1 cut(s) 459
BstDEI CTNAG 2 cut(s) 221, 1197
BstF5I GGATG 2 cut(s) 455, 706
BstKTI GATC 3 cut(s) 85, 1196, 1237
BstMBI GATC 3 cut(s) 82, 1193, 1234
BstMWI GCNNNNNNNGC 2 cut(s) 488, 1257
BstNI CCWGG 1 cut(s) 806
BstSCI CCNGG 2 cut(s) 804, 1154
BstSFI CTRYAG 2 cut(s) 910, 1249
BstV1I GCAGC 2 cut(s) 394, 1235
BstV2I GAAGAC 1 cut(s) 1040
BstX2I RGATCY 1 cut(s) 1193
BstYI RGATCY 1 cut(s) 1193
Bsu15I ATCGAT 1 cut(s) 789
BsuTUI ATCGAT 1 cut(s) 789
BtsCI GGATG 2 cut(s) 455, 706
Cac8I GCNNGC 1 cut(s) 459
Cfr13I GGNCC 1 cut(s) 571
ClaI ATCGAT 1 cut(s) 789
Csp6I GTAC 6 cut(s) 559, 646, 1166, 1338, 1409, 1428
CspCI CAANNNNNGTGG 2 cut(s) 104, 139
CviAII CATG 4 cut(s) 241, 725, 773, 1364
CviQI GTAC 6 cut(s) 559, 646, 1166, 1338, 1409, 1428
DdeI CTNAG 2 cut(s) 221, 1197
DpnI GATC 3 cut(s) 84, 1195, 1236
DpnII GATC 3 cut(s) 82, 1193, 1234
Eam1104I CTCTTC 7 cut(s) 30, 72, 540, 894, 1095, 1115, 1410
EarI CTCTTC 7 cut(s) 30, 72, 540, 894, 1095, 1115, 1410
Ecl136II GAGCTC 1 cut(s) 722
Eco24I GRGCYC 1 cut(s) 724
Eco47I GGWCC 1 cut(s) 571
Eco53kI GAGCTC 1 cut(s) 722
Eco57I CTGAAG 3 cut(s) 122, 897, 1002
EcoICRI GAGCTC 1 cut(s) 722
EcoRII CCWGG 1 cut(s) 804
EcoT38I GRGCYC 1 cut(s) 724
FaeI CATG 4 cut(s) 244, 728, 776, 1367
FaqI GGGAC 2 cut(s) 1097, 1330
FatI CATG 4 cut(s) 240, 724, 772, 1363
FauI CCCGC 3 cut(s) 402, 414, 534
Fnu4HI GCNGC 4 cut(s) 375, 383, 1246, 1249
FokI GGATG 2 cut(s) 462, 713
FriOI GRGCYC 1 cut(s) 724
Fsp4HI GCNGC 4 cut(s) 375, 383, 1246, 1249
GluI GCNGC 4 cut(s) 375, 383, 1246, 1249
GsaI CCCAGC 2 cut(s) 1118, 1447
HapII CCGG 4 cut(s) 71, 1148, 1155, 1287
Hin1II CATG 4 cut(s) 244, 728, 776, 1367
HindIII AAGCTT 1 cut(s) 1258
HinfI GANTC 7 cut(s) 20, 358, 590, 779, 786, 890, 1151
HpaII CCGG 4 cut(s) 71, 1148, 1155, 1287
HphI GGTGA 2 cut(s) 256, 395
Hpy166II GTNNAC 2 cut(s) 559, 648
Hpy188I TCNGA 6 cut(s) 25, 87, 530, 595, 1198, 1379
Hpy188III TCNNGA 6 cut(s) 71, 618, 783, 1204, 1287, 1343
Hpy8I GTNNAC 2 cut(s) 559, 648
Hpy99I CGWCG 1 cut(s) 1076
HpyAV CCTTC 5 cut(s) 301, 863, 1054, 1175, 1262
HpyCH4III ACNGT 2 cut(s) 67, 172
HpyCH4IV ACGT 1 cut(s) 1411
HpyCH4V TGCA 9 cut(s) 296, 482, 491, 611, 743, 912, 1004, 1052, 1251
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 1257
HpyF3I CTNAG 2 cut(s) 221, 1197
HpySE526I ACGT 1 cut(s) 1411
Hsp92II CATG 4 cut(s) 244, 728, 776, 1367
Kpn2I TCCGGA 2 cut(s) 70, 1286
KpnI GGTACC 1 cut(s) 1169
Kzo9I GATC 3 cut(s) 82, 1193, 1234
LguI GCTCTTC 1 cut(s) 894
LmnI GCTCC 2 cut(s) 337, 395
Lsp1109I GCAGC 2 cut(s) 394, 1235
LweI GCATC 2 cut(s) 305, 469
MaeII ACGT 1 cut(s) 1411
MaeIII GTNAC 2 cut(s) 274, 1204
MalI GATC 3 cut(s) 84, 1195, 1236
MboI GATC 3 cut(s) 82, 1193, 1234
MflI RGATCY 1 cut(s) 1193
MhlI GDGCHC 2 cut(s) 353, 724
MlyI GAGTC 2 cut(s) 352, 599
MmeI TCCRAC 2 cut(s) 411, 1401
MroI TCCGGA 2 cut(s) 70, 1286
MroXI GAANNNNTTC 2 cut(s) 996, 1350
MseI TTAA 2 cut(s) 1470, 1483
MspA1I CMGCKG 2 cut(s) 374, 759
MspI CCGG 4 cut(s) 71, 1148, 1155, 1287
MspR9I CCNGG 2 cut(s) 806, 1156
Mva1269I GAATGC 1 cut(s) 253
MvaI CCWGG 1 cut(s) 806
MwoI GCNNNNNNNGC 2 cut(s) 488, 1257
NciI CCSGG 1 cut(s) 1156
NdeII GATC 3 cut(s) 82, 1193, 1234
NlaIII CATG 4 cut(s) 244, 728, 776, 1367
NlaIV GGNNCC 2 cut(s) 1146, 1167
NmeAIII GCCGAG 1 cut(s) 358
NmuCI GTSAC 2 cut(s) 274, 1204
NspV TTCGAA 1 cut(s) 665
PciSI GCTCTTC 1 cut(s) 894
PctI GAATGC 1 cut(s) 253
PdmI GAANNNNTTC 2 cut(s) 996, 1350
PfeI GAWTC 5 cut(s) 20, 779, 786, 890, 1151
PkrI GCNGC 4 cut(s) 376, 384, 1247, 1250
PleI GAGTC 2 cut(s) 352, 598
PpsI GAGTC 2 cut(s) 352, 598
Ppu21I YACGTR 1 cut(s) 1412
Psp124BI GAGCTC 1 cut(s) 724
Psp6I CCWGG 1 cut(s) 804
PspFI CCCAGC 2 cut(s) 1114, 1443
PspGI CCWGG 1 cut(s) 804
PspN4I GGNNCC 2 cut(s) 1146, 1167
PspPI GGNCC 1 cut(s) 571
PstI CTGCAG 2 cut(s) 914, 1253
PsuI RGATCY 1 cut(s) 1193
PvuII CAGCTG 1 cut(s) 759
RsaI GTAC 6 cut(s) 560, 647, 1167, 1339, 1410, 1429
RsaNI GTAC 6 cut(s) 559, 646, 1166, 1338, 1409, 1428
SacI GAGCTC 1 cut(s) 724
SapI GCTCTTC 1 cut(s) 894
SaqAI TTAA 2 cut(s) 1470, 1483
SatI GCNGC 4 cut(s) 375, 383, 1246, 1249
Sau3AI GATC 3 cut(s) 82, 1193, 1234
Sau96I GGNCC 1 cut(s) 571
ScaI AGTACT 1 cut(s) 1339
SchI GAGTC 2 cut(s) 352, 599
ScrFI CCNGG 2 cut(s) 806, 1156
SduI GDGCHC 2 cut(s) 353, 724
SfaNI GCATC 2 cut(s) 305, 469
SfcI CTRYAG 2 cut(s) 910, 1249
SfuI TTCGAA 1 cut(s) 665
SinI GGWCC 1 cut(s) 571
SsiI CCGC 7 cut(s) 251, 374, 395, 407, 541, 630, 1245
SstI GAGCTC 1 cut(s) 724
StyD4I CCNGG 2 cut(s) 804, 1154
TaaI ACNGT 2 cut(s) 67, 172
TaiI ACGT 1 cut(s) 1414
TaqI TCGA 2 cut(s) 665, 789
TaqII GACCGA 1 cut(s) 293
TatI WGTACW 3 cut(s) 558, 645, 1337
TauI GCSGC 2 cut(s) 377, 1248
TfiI GAWTC 5 cut(s) 20, 779, 786, 890, 1151
Tru1I TTAA 2 cut(s) 1470, 1483
Tru9I TTAA 2 cut(s) 1470, 1483
TseFI GTSAC 2 cut(s) 274, 1204
TseI GCWGC 2 cut(s) 382, 1248
Tsp45I GTSAC 2 cut(s) 274, 1204
TspDTI ATGAA 9 cut(s) 17, 69, 789, 807, 897, 912, 1002, 1113, 1343
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 3 cut(s) 283, 660, 712
XmnI GAANNNNTTC 2 cut(s) 996, 1350
ZrmI AGTACT 1 cut(s) 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.