Rroxscaffold_1G00056320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000100
Physical Location & Seq
Reverse (-)
78095523 .. 78103562
8040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056320.1

Sequence Viewer

Length: 564 bp
ATGAAGTATGAACAATGTGGACACACAAGTGCGATCCTTTACACATGGTTTGATATTTTTGGACACGGTGTTGAAGAGGACTACGTCTTCCGTGCTGTTGACTATGAGGTATTACGGGACTTTCGGGATCACATGCTCAAGTGGGAGAAAGAGCTTCAGCAAAAGGAGGAGGAGATAAGATATATGACTGTGGAGAAAGATAATTTGAAGAAAAAACTGAACAAAAAGGAACAGGAACTAAGGATAATCAAGGAGGACATGGTGAATCCGGAGGAACGAAATGCTACACTTGTGACCGAAAATTTCTGCCTTGCATCATCGGTGAAGCGGTTAGAGGTAAAATTGAAGGAATTGGAGCAAATATTGAGCCCAAAGACTCACACCTCAACAGCAGCTCAGCAACACAGCAGCTCCCCGCCACCTCACCGCACGGTGGCGAAGAAACTCAATCGACAACTCCATCACATAAGGACTCACGGTTCCGAGCCCCACAGTCACATGCCCACAGGAGGAAATGGAACAACAAGTCGACATGTTTCGGATAGTGAAAAGTCCTATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.87

Weight (kDa)

7.22

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 529
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 3 cut(s) 328, 416, 427
AclWI GGATC 2 cut(s) 28, 135
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 433, 509
AflIII ACRYGT 1 cut(s) 532
AgsI TTSAA 3 cut(s) 74, 208, 346
AleI CACNNNNGTG 1 cut(s) 27
AloI GAACNNNNNNTCC 2 cut(s) 463, 495
AluBI AGCT 3 cut(s) 154, 395, 411
AluI AGCT 3 cut(s) 154, 395, 411
AlwI GGATC 2 cut(s) 28, 135
Aor13HI TCCGGA 1 cut(s) 268
ApeKI GCWGC 2 cut(s) 392, 408
ApoI RAATTY 1 cut(s) 301
AsuHPI GGTGA 3 cut(s) 274, 334, 416
BanII GRGCYC 2 cut(s) 371, 489
BbsI GAAGAC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 404, 420
BccI CCATC 1 cut(s) 468
BfmI CTRYAG 1 cut(s) 556
BisI GCNGC 2 cut(s) 393, 409
BlpI GCTNAGC 1 cut(s) 396
BlsI GCNGC 2 cut(s) 394, 410
BmiI GGNNCC 1 cut(s) 481
BmsI GCATC 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 79
Bpu1102I GCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 2 cut(s) 433, 509
BseAI TCCGGA 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 433, 509
BseMII CTCAG 1 cut(s) 410
BseRI GAGGAG 2 cut(s) 182, 185
BseXI GCAGC 2 cut(s) 404, 420
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 433, 509
BsmFI GGGAC 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 371, 489
Bsp13I TCCGGA 1 cut(s) 268
Bsp143I GATC 2 cut(s) 33, 127
Bsp1720I GCTNAGC 1 cut(s) 396
BspACI CCGC 3 cut(s) 328, 416, 427
BspCNI CTCAG 1 cut(s) 409
BspEI TCCGGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 481
BspPI GGATC 2 cut(s) 28, 135
BssMI GATC 2 cut(s) 33, 127
Bst4CI ACNGT 5 cut(s) 68, 190, 433, 479, 494
Bst6I CTCTTC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 239, 396
BstKTI GATC 2 cut(s) 36, 130
BstMBI GATC 2 cut(s) 33, 127
BstNSI RCATGY 3 cut(s) 136, 502, 536
BstSFI CTRYAG 1 cut(s) 556
BstV1I GCAGC 2 cut(s) 404, 420
BstV2I GAAGAC 1 cut(s) 79
CviAII CATG 5 cut(s) 45, 133, 259, 499, 533
CviJI RGCY 5 cut(s) 154, 369, 395, 411, 487
CviKI_1 RGCY 5 cut(s) 154, 369, 395, 411, 487
DdeI CTNAG 2 cut(s) 239, 396
DpnI GATC 2 cut(s) 35, 129
DpnII GATC 2 cut(s) 33, 127
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco24I GRGCYC 2 cut(s) 371, 489
Eco57I CTGAAG 1 cut(s) 140
EcoT38I GRGCYC 2 cut(s) 371, 489
FaeI CATG 5 cut(s) 48, 136, 262, 502, 536
FaqI GGGAC 1 cut(s) 131
FatI CATG 5 cut(s) 44, 132, 258, 498, 532
FauI CCCGC 1 cut(s) 423
FblI GTMKAC 1 cut(s) 529
Fnu4HI GCNGC 2 cut(s) 393, 409
FriOI GRGCYC 2 cut(s) 371, 489
Fsp4HI GCNGC 2 cut(s) 393, 409
GluI GCNGC 2 cut(s) 393, 409
HapII CCGG 1 cut(s) 269
Hin1II CATG 5 cut(s) 48, 136, 262, 502, 536
HincII GTYRAC 2 cut(s) 100, 530
HindII GTYRAC 2 cut(s) 100, 530
HinfI GANTC 3 cut(s) 265, 376, 472
HpaII CCGG 1 cut(s) 269
HphI GGTGA 3 cut(s) 274, 334, 416
Hpy166II GTNNAC 3 cut(s) 20, 100, 530
Hpy188I TCNGA 2 cut(s) 484, 541
Hpy188III TCNNGA 2 cut(s) 125, 269
Hpy8I GTNNAC 3 cut(s) 20, 100, 530
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 5 cut(s) 68, 190, 433, 479, 494
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 314
HpyF3I CTNAG 2 cut(s) 239, 396
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 5 cut(s) 48, 136, 262, 502, 536
Kpn2I TCCGGA 1 cut(s) 268
Kzo9I GATC 2 cut(s) 33, 127
LmnI GCTCC 2 cut(s) 355, 416
LpnPI CCDG 3 cut(s) 218, 282, 492
Lsp1109I GCAGC 2 cut(s) 404, 420
LweI GCATC 1 cut(s) 323
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 292, 494
MalI GATC 2 cut(s) 35, 129
MboI GATC 2 cut(s) 33, 127
MboII GAAGA 4 cut(s) 79, 86, 220, 451
MhlI GDGCHC 2 cut(s) 371, 489
MluCI AATT 4 cut(s) 202, 301, 341, 350
MlyI GAGTC 2 cut(s) 370, 466
MroI TCCGGA 1 cut(s) 268
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 1 cut(s) 269
NdeII GATC 2 cut(s) 33, 127
NlaIII CATG 5 cut(s) 48, 136, 262, 502, 536
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 2 cut(s) 292, 494
NspI RCATGY 3 cut(s) 136, 502, 536
OliI CACNNNNGTG 1 cut(s) 27
PciI ACATGT 1 cut(s) 532
PfeI GAWTC 1 cut(s) 265
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 394, 410
PleI GAGTC 2 cut(s) 370, 466
PpsI GAGTC 2 cut(s) 370, 466
PscI ACATGT 1 cut(s) 532
PspN4I GGNNCC 1 cut(s) 481
PsyI GACNNNGTC 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 27
SalI GTCGAC 1 cut(s) 528
SatI GCNGC 2 cut(s) 393, 409
Sau3AI GATC 2 cut(s) 33, 127
SchI GAGTC 2 cut(s) 370, 466
SduI GDGCHC 2 cut(s) 371, 489
SetI ASST 8 cut(s) 87, 111, 156, 339, 386, 397, 413, 424
SfaNI GCATC 1 cut(s) 323
SfcI CTRYAG 1 cut(s) 556
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 4 cut(s) 202, 301, 341, 350
SsiI CCGC 3 cut(s) 328, 416, 427
SspI AATATT 1 cut(s) 363
TaaI ACNGT 5 cut(s) 68, 190, 433, 479, 494
TaiI ACGT 1 cut(s) 87
TaqI TCGA 2 cut(s) 451, 529
TaqII GACCGA 1 cut(s) 311
TasI AATT 4 cut(s) 202, 301, 341, 350
TfiI GAWTC 1 cut(s) 265
TseFI GTSAC 2 cut(s) 292, 494
TseI GCWGC 2 cut(s) 392, 408
Tsp45I GTSAC 2 cut(s) 292, 494
TspDTI ATGAA 2 cut(s) 17, 24
TspGWI ACGGA 1 cut(s) 80
Tth111I GACNNNGTC 1 cut(s) 83
XapI RAATTY 1 cut(s) 301
XceI RCATGY 3 cut(s) 136, 502, 536
XmiI GTMKAC 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.