Rorug05G0169200

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000100
Physical Location & Seq
Reverse (-)
15732445 .. 15734426
1982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0169200.1

Sequence Viewer

Length: 1236 bp
ATGTGCAGCTCTAAGGCCAAGGTGACCATGGGGATTGAAATCACACCCCTTGTTTCTAGAATCAATGGCAGACCAGTGCTTCAGCCTACCTGCAATCGAGTTCCTAGTCTAGACCGGCGCAATTCCCTTAAGAAACTGTCAACAGCACCACCACCTCTACCATTATCAACTTCTTCTTCTACCAGCACTAGTCCTAGAATTAGTACCAAGGTTTCATTGACAACACCACCAATTTCTCCAAAGTCAAAATCTCCGAGACCACCGGCGATAAAGAGATCAGGCAATGACCCTAATGGCTTGAACTCCAGTTCTGAGAAAGTTGTGACACCAGGAGGTACCACAAGAGCTAAGGTTTTGGAGAGGAAGAAGTCAAAGAGTTTTAAGCTTGGTGTTGGTGCTGATAATGCTCATGATCATGGTAGACTCTCTTCTGCTTCGATTGAGGCTTCGTTGAGCTATTCCTCTTCTCTGATCACCGAGGCACCAGGAACCATTGCAGCTGGGAGGAGGGAGCAGATGGCTCTTCAACATGCACAGAGAAAGATGAAGATTGCTCATTATGGAAGATCAAAGTCTGCAAATTTTGAAAGGGTTGCTCCAGTTGATACTATGGAAGCCAAAGCTGGTGAAGAAGATCACAAAAGATGCAGCTTCATCACGGCTAATTCAGATCCCATATATGTTGCTTACCATGATCAAGAATGGGGAGTTCCTGTTCATGATGACAAGATGTTATTTGAACTACTTGTTCTAAGTGGAGCTCAAGTTGGATCAGATTGGACTTCCATTTTAAAGAAACGCCAAGATTTCAGGGATGCATTTTCTGGGTTTGATGCTGAAGCTGTGGCCAGTCTCACTGACAAGCAAATGATTTCGATTTGTTCAGAATATGGCATTGATATAAGCAGAGTTAGAGGAGTAGTAGACAACTCTAACAGAATTCTTGAGGTAAAGAAGGAATTTGGGTCATTTCACAAATACATATGGGGGTTTGTGAATCACAAGCCAATTTCCCCTCAATACAAGCAAGGCTACAAAATCCCAGTGAAGACATCAAAATCAGAGAGCATAAGCAAAGACATGGTTAGGAGGGGGTTTAGGTTTGTTGGTCCAACAGTTGTTCATTCCTTCATGCAAGCCTCAGGCCTCACAAATGACCATTTGACCACCTGCCACAGGCACCTTCAGTGCACCTTACTAGCAGCCCATCCTACCACATTGGAACAAGCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

411

Amino Acids

45.05

Weight (kDa)

9.77

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenine_glyco PF03352 221 - 394 1.7e-65 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1178
Acc36I ACCTGC 2 cut(s) 98, 1178
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 3 cut(s) 335, 481, 1179
AccI GTMKAC 2 cut(s) 421, 924
AclWI GGATC 2 cut(s) 665, 778
AcoI YGGCCR 1 cut(s) 846
AcsI RAATTY 3 cut(s) 580, 939, 959
AcuI CTGAAG 3 cut(s) 65, 858, 1169
AfaI GTAC 2 cut(s) 205, 337
AfiI CCNNNNNNNGG 1 cut(s) 1176
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 5 cut(s) 38, 301, 527, 587, 740
AhlI ACTAGT 1 cut(s) 188
AjnI CCWGG 2 cut(s) 328, 484
AloI GAACNNNNNNTCC 2 cut(s) 699, 731
Alw21I GWGCWC 2 cut(s) 763, 1193
Alw26I GTCTC 2 cut(s) 250, 857
Alw44I GTGCAC 1 cut(s) 1189
AlwI GGATC 2 cut(s) 665, 778
AoxI GGCC 3 cut(s) 15, 846, 1144
ApaLI GTGCAC 1 cut(s) 1189
ApeKI GCWGC 4 cut(s) 6, 497, 648, 1202
ApoI RAATTY 3 cut(s) 580, 939, 959
Asp718I GGTACC 1 cut(s) 335
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 1109
AsuHPI GGTGA 3 cut(s) 34, 466, 638
AvaII GGWCC 1 cut(s) 1109
AxyI CCTNAGG 1 cut(s) 1141
BaeGI GKGCMC 1 cut(s) 1193
BalI TGGCCA 1 cut(s) 848
BanI GGYRCC 3 cut(s) 335, 481, 1179
BanII GRGCYC 1 cut(s) 763
BarI GAAGNNNNNNTAC 2 cut(s) 412, 444
BbsI GAAGAC 1 cut(s) 1055
Bbv12I GWGCWC 2 cut(s) 763, 1193
BbvI GCAGC 4 cut(s) 18, 509, 660, 1214
BccI CCATC 2 cut(s) 511, 1215
BceAI ACGGC 1 cut(s) 675
BciT130I CCWGG 2 cut(s) 330, 486
BclI TGATCA 3 cut(s) 412, 471, 694
BcoDI GTCTC 2 cut(s) 250, 857
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 6 cut(s) 57, 105, 110, 189, 195, 1199
BfmI CTRYAG 1 cut(s) 1232
BfrI CTTAAG 1 cut(s) 128
BfuAI ACCTGC 2 cut(s) 98, 1178
BisI GCNGC 4 cut(s) 7, 498, 649, 1203
BlsI GCNGC 4 cut(s) 8, 499, 650, 1204
Bme1390I CCNGG 2 cut(s) 330, 486
Bme18I GGWCC 1 cut(s) 1109
BmgT120I GGNCC 1 cut(s) 1109
BmiI GGNNCC 4 cut(s) 337, 483, 490, 1181
BmrFI CCNGG 2 cut(s) 330, 486
BmrI ACTGGG 1 cut(s) 1037
BmsI GCATC 3 cut(s) 635, 805, 823
BmuI ACTGGG 1 cut(s) 1037
BpiI GAAGAC 1 cut(s) 1055
BpmI CTGGAG 2 cut(s) 289, 582
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 2 cut(s) 747, 965
BsaBI GATNNNNATC 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 250
BsaJI CCNNGG 4 cut(s) 18, 27, 207, 477
BsaXI ACNNNNNCTCC 4 cut(s) 699, 729, 750, 780
Bsc4I CCNNNNNNNGG 1 cut(s) 1176
Bse118I RCCGGY 2 cut(s) 114, 262
Bse1I ACTGG 5 cut(s) 74, 306, 599, 849, 1043
Bse21I CCTNAGG 1 cut(s) 1141
Bse3DI GCAATG 2 cut(s) 289, 492
Bse8I GATNNNNATC 1 cut(s) 38
BseBI CCWGG 2 cut(s) 330, 486
BseDI CCNNGG 4 cut(s) 18, 27, 207, 477
BseGI GGATG 2 cut(s) 820, 1207
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 1176
BseMI GCAATG 2 cut(s) 289, 492
BseMII CTCAG 2 cut(s) 303, 1155
BseNI ACTGG 5 cut(s) 74, 306, 599, 849, 1043
BseRI GAGGAG 2 cut(s) 520, 930
BseSI GKGCMC 1 cut(s) 1193
BseXI GCAGC 4 cut(s) 18, 509, 660, 1214
BseYI CCCAGC 1 cut(s) 500
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 3 cut(s) 17, 848, 1146
BshNI GGYRCC 3 cut(s) 335, 481, 1179
BsiHKAI GWGCWC 2 cut(s) 763, 1193
BsiSI CCGG 2 cut(s) 115, 263
BslI CCNNNNNNNGG 1 cut(s) 1176
BsmAI GTCTC 2 cut(s) 250, 857
BsnI GGCC 3 cut(s) 17, 848, 1146
Bso31I GGTCTC 1 cut(s) 250
Bsp1286I GDGCHC 2 cut(s) 763, 1193
Bsp143I GATC 8 cut(s) 275, 412, 471, 566, 634, 670, 694, 770
Bsp19I CCATGG 1 cut(s) 27
BspANI GGCC 3 cut(s) 17, 848, 1146
BspCNI CTCAG 2 cut(s) 304, 1154
BspHI TCATGA 2 cut(s) 409, 718
BspLI GGNNCC 4 cut(s) 337, 483, 490, 1181
BspMI ACCTGC 2 cut(s) 98, 1178
BspPI GGATC 2 cut(s) 665, 778
BspQI GCTCTTC 1 cut(s) 528
BspT107I GGYRCC 3 cut(s) 335, 481, 1179
BspTI CTTAAG 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 250
BsrDI GCAATG 2 cut(s) 289, 492
BsrFI RCCGGY 2 cut(s) 114, 262
BsrI ACTGG 5 cut(s) 74, 306, 599, 849, 1043
BssAI RCCGGY 2 cut(s) 114, 262
BssECI CCNNGG 4 cut(s) 18, 27, 207, 477
BssMI GATC 8 cut(s) 275, 412, 471, 566, 634, 670, 694, 770
BssT1I CCWWGG 3 cut(s) 18, 27, 207
Bst2UI CCWGG 2 cut(s) 330, 486
Bst4CI ACNGT 2 cut(s) 138, 1117
Bst6I CTCTTC 3 cut(s) 433, 469, 528
BstAFI CTTAAG 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 1137
BstDEI CTNAG 5 cut(s) 12, 312, 348, 752, 1141
BstDSI CCRYGG 1 cut(s) 27
BstEII GGTNACC 1 cut(s) 22
BstENI CCTNNNNNAGG 1 cut(s) 1174
BstF5I GGATG 2 cut(s) 820, 1207
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 8 cut(s) 278, 415, 474, 569, 637, 673, 697, 773
BstMAI GTCTC 2 cut(s) 250, 857
BstMBI GATC 8 cut(s) 275, 412, 471, 566, 634, 670, 694, 770
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 2 cut(s) 330, 486
BstNSI RCATGY 1 cut(s) 533
BstPI GGTNACC 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 328, 484
BstSFI CTRYAG 1 cut(s) 1232
BstSLI GKGCMC 1 cut(s) 1193
BstV1I GCAGC 4 cut(s) 18, 509, 660, 1214
BstV2I GAAGAC 1 cut(s) 1055
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
Bsu36I CCTNAGG 1 cut(s) 1141
BsuRI GGCC 3 cut(s) 17, 848, 1146
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 2 cut(s) 820, 1207
BtsIMutI CAGTG 4 cut(s) 81, 855, 1050, 1193
BveI ACCTGC 2 cut(s) 98, 1178
Cac8I GCNNGC 1 cut(s) 1137
CciI TCATGA 2 cut(s) 409, 718
CfoI GCGC 1 cut(s) 120
Cfr10I RCCGGY 2 cut(s) 114, 262
Cfr13I GGNCC 1 cut(s) 1109
Csp6I GTAC 2 cut(s) 204, 336
CviAII CATG 8 cut(s) 28, 410, 416, 530, 692, 719, 1081, 1132
CviQI GTAC 2 cut(s) 204, 336
DdeI CTNAG 5 cut(s) 12, 312, 348, 752, 1141
DpnI GATC 8 cut(s) 277, 414, 473, 568, 636, 672, 696, 772
DpnII GATC 8 cut(s) 275, 412, 471, 566, 634, 670, 694, 770
DraI TTTAAA 1 cut(s) 792
EaeI YGGCCR 1 cut(s) 846
Eam1104I CTCTTC 3 cut(s) 433, 469, 528
EarI CTCTTC 3 cut(s) 433, 469, 528
Ecl136II GAGCTC 1 cut(s) 761
Eco130I CCWWGG 3 cut(s) 18, 27, 207
Eco147I AGGCCT 1 cut(s) 1146
Eco24I GRGCYC 1 cut(s) 763
Eco31I GGTCTC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 1109
Eco53kI GAGCTC 1 cut(s) 761
Eco57I CTGAAG 3 cut(s) 65, 858, 1169
Eco81I CCTNAGG 1 cut(s) 1141
Eco91I GGTNACC 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 761
EcoNI CCTNNNNNAGG 1 cut(s) 1174
EcoO65I GGTNACC 1 cut(s) 22
EcoRI GAATTC 1 cut(s) 939
EcoRII CCWGG 2 cut(s) 328, 484
EcoT14I CCWWGG 3 cut(s) 18, 27, 207
EcoT22I ATGCAT 1 cut(s) 820
EcoT38I GRGCYC 1 cut(s) 763
ErhI CCWWGG 3 cut(s) 18, 27, 207
FaeI CATG 8 cut(s) 31, 413, 419, 533, 695, 722, 1084, 1135
FatI CATG 8 cut(s) 27, 409, 415, 529, 691, 718, 1080, 1131
FauNDI CATATG 1 cut(s) 983
FbaI TGATCA 3 cut(s) 412, 471, 694
FblI GTMKAC 2 cut(s) 421, 924
Fnu4HI GCNGC 4 cut(s) 7, 498, 649, 1203
FokI GGATG 2 cut(s) 827, 1194
FriOI GRGCYC 1 cut(s) 763
Fsp4HI GCNGC 4 cut(s) 7, 498, 649, 1203
FspBI CTAG 6 cut(s) 57, 105, 110, 189, 195, 1199
GlaI GCGC 1 cut(s) 119
GluI GCNGC 4 cut(s) 7, 498, 649, 1203
GsaI CCCAGC 1 cut(s) 504
GsuI CTGGAG 2 cut(s) 289, 582
HaeIII GGCC 3 cut(s) 17, 848, 1146
HapII CCGG 2 cut(s) 115, 263
HhaI GCGC 1 cut(s) 120
Hin1II CATG 8 cut(s) 31, 413, 419, 533, 695, 722, 1084, 1135
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 3 cut(s) 60, 423, 997
HpaII CCGG 2 cut(s) 115, 263
HphI GGTGA 3 cut(s) 34, 466, 638
Hpy166II GTNNAC 4 cut(s) 141, 422, 925, 1191
Hpy188I TCNGA 7 cut(s) 255, 313, 471, 670, 775, 886, 1063
Hpy188III TCNNGA 6 cut(s) 57, 110, 410, 698, 719, 944
Hpy8I GTNNAC 4 cut(s) 141, 422, 925, 1191
HpyAV CCTTC 3 cut(s) 949, 1138, 1193
HpyCH4III ACNGT 2 cut(s) 138, 1117
HpyCH4V TGCA 9 cut(s) 6, 93, 497, 533, 578, 648, 818, 1135, 1191
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 5 cut(s) 12, 312, 348, 752, 1141
Hsp92II CATG 8 cut(s) 31, 413, 419, 533, 695, 722, 1084, 1135
HspAI GCGC 1 cut(s) 118
KpnI GGTACC 1 cut(s) 339
Ksp22I TGATCA 3 cut(s) 412, 471, 694
Kzo9I GATC 8 cut(s) 275, 412, 471, 566, 634, 670, 694, 770
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 3 cut(s) 511, 601, 758
Lsp1109I GCAGC 4 cut(s) 18, 509, 660, 1214
LweI GCATC 3 cut(s) 635, 805, 823
MaeI CTAG 6 cut(s) 57, 105, 110, 189, 195, 1199
MaeIII GTNAC 2 cut(s) 22, 322
MalI GATC 8 cut(s) 277, 414, 473, 568, 636, 672, 696, 772
MboI GATC 8 cut(s) 275, 412, 471, 566, 634, 670, 694, 770
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 2 cut(s) 763, 1193
MlsI TGGCCA 1 cut(s) 848
MluCI AATT 8 cut(s) 121, 198, 231, 580, 664, 939, 959, 1008
MluNI TGGCCA 1 cut(s) 848
MlyI GAGTC 1 cut(s) 417
MmeI TCCRAC 2 cut(s) 748, 1136
Mox20I TGGCCA 1 cut(s) 848
Mph1103I ATGCAT 1 cut(s) 820
MscI TGGCCA 1 cut(s) 848
MseI TTAA 3 cut(s) 129, 381, 791
MslI CAYNNNNRTG 1 cut(s) 414
Msp20I TGGCCA 1 cut(s) 848
MspA1I CMGCKG 1 cut(s) 500
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 2 cut(s) 115, 263
MspR9I CCNGG 2 cut(s) 330, 486
MvaI CCWGG 2 cut(s) 330, 486
MwoI GCNNNNNNNGC 1 cut(s) 404
NcoI CCATGG 1 cut(s) 27
NdeI CATATG 1 cut(s) 983
NdeII GATC 8 cut(s) 275, 412, 471, 566, 634, 670, 694, 770
NlaIII CATG 8 cut(s) 31, 413, 419, 533, 695, 722, 1084, 1135
NlaIV GGNNCC 4 cut(s) 337, 483, 490, 1181
NmuCI GTSAC 2 cut(s) 22, 322
NsiI ATGCAT 1 cut(s) 820
NspI RCATGY 1 cut(s) 533
PagI TCATGA 2 cut(s) 409, 718
PaqCI CACCTGC 1 cut(s) 1178
PceI AGGCCT 1 cut(s) 1146
PciSI GCTCTTC 1 cut(s) 528
PfeI GAWTC 2 cut(s) 60, 997
PkrI GCNGC 4 cut(s) 8, 499, 650, 1204
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
Psp124BI GAGCTC 1 cut(s) 763
Psp6I CCWGG 2 cut(s) 328, 484
PspEI GGTNACC 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 500
PspGI CCWGG 2 cut(s) 328, 484
PspN4I GGNNCC 4 cut(s) 337, 483, 490, 1181
PspPI GGNCC 1 cut(s) 1109
PsuI RGATCY 1 cut(s) 670
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 2 cut(s) 205, 337
RsaNI GTAC 2 cut(s) 204, 336
RseI CAYNNNNRTG 1 cut(s) 414
SacI GAGCTC 1 cut(s) 763
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 3 cut(s) 129, 381, 791
SatI GCNGC 4 cut(s) 7, 498, 649, 1203
Sau3AI GATC 8 cut(s) 275, 412, 471, 566, 634, 670, 694, 770
Sau96I GGNCC 1 cut(s) 1109
SchI GAGTC 1 cut(s) 417
ScrFI CCNGG 2 cut(s) 330, 486
SduI GDGCHC 2 cut(s) 763, 1193
SfaNI GCATC 3 cut(s) 635, 805, 823
SfcI CTRYAG 1 cut(s) 1232
SgrAI CRCCGGYG 1 cut(s) 262
SinI GGWCC 1 cut(s) 1109
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 3 cut(s) 128, 762, 944
SmoI CTYRAG 3 cut(s) 128, 762, 944
SpeI ACTAGT 1 cut(s) 188
Sse9I AATT 8 cut(s) 121, 198, 231, 580, 664, 939, 959, 1008
SseBI AGGCCT 1 cut(s) 1146
SspMI CTAG 6 cut(s) 57, 105, 110, 189, 195, 1199
SstI GAGCTC 1 cut(s) 763
StuI AGGCCT 1 cut(s) 1146
StyD4I CCNGG 2 cut(s) 328, 484
StyI CCWWGG 3 cut(s) 18, 27, 207
TaaI ACNGT 2 cut(s) 138, 1117
TaqI TCGA 3 cut(s) 97, 437, 875
TasI AATT 8 cut(s) 121, 198, 231, 580, 664, 939, 959, 1008
TfiI GAWTC 2 cut(s) 60, 997
Tru1I TTAA 3 cut(s) 129, 381, 791
Tru9I TTAA 3 cut(s) 129, 381, 791
TscAI CASTG 4 cut(s) 81, 862, 1050, 1193
TseFI GTSAC 2 cut(s) 22, 322
TseI GCWGC 4 cut(s) 6, 497, 648, 1202
Tsp45I GTSAC 2 cut(s) 22, 322
TspDTI ATGAA 6 cut(s) 204, 560, 643, 707, 1112, 1120
TspRI CASTG 4 cut(s) 81, 862, 1050, 1193
Vha464I CTTAAG 1 cut(s) 128
VneI GTGCAC 1 cut(s) 1189
VpaK11BI GGWCC 1 cut(s) 1109
XagI CCTNNNNNAGG 1 cut(s) 1174
XapI RAATTY 3 cut(s) 580, 939, 959
XbaI TCTAGA 2 cut(s) 56, 109
XceI RCATGY 1 cut(s) 533
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XmiI GTMKAC 2 cut(s) 421, 924
XspI CTAG 6 cut(s) 57, 105, 110, 189, 195, 1199
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.