Rroxscaffold_1G00020350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000100
Physical Location & Seq
Forward (+)
24657538 .. 24658665
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00020350.1

Sequence Viewer

Length: 573 bp
ATGGAACAACAAGGCGACATGTTTCGGATAGTGAAAAGTCCTATAGTTGAAGAAGCATTTCCACTTCGTACATTGAGCATAGAGAAAGAGAAAAAGACACCGAGCGAGCAAAAAGAGCGAGACAACATTTCTTGGTGGGGAGATGTGAAAGCAAAACGACGAAGAAAGCAAAGGAGATTGAAAGATGCTGAAAAGAAAGAAAAAGAAAAGGATTTGAAGGCCTCACTGCAAGATGCCGAACGTAAAAAGCTCGAACGGATGGTAGAACAACGAAGTTGGACGATTTACCGAGGATGTTCTGCAAGCAATAAGAGAGATGGACGATGCGAGAAAATGCACAAATCAATAAAGAGCCGAACGAAGAAACGACTACCTCCCGAGGTTGTAGGCGGGAAGCGAGCAAAGTGTACAATTTTATGGACCGGGACACCAAGAGCGAGTCCGAAATACGGCAAAATGCACCATCGGGGTAATACTTTAATTAAGTTAAAATTCTATTTTAAACTTATTGTAAGCGGCCAAGTAACCTGTTTATGTAACTATCAAAGTAATCGGCCAAGACGAAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

22.48

Weight (kDa)

10.36

Isoelectric Point (pI)

65.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 390, 516
AcoI YGGCCR 2 cut(s) 517, 554
AcsI RAATTY 2 cut(s) 491, 566
AfaI GTAC 2 cut(s) 70, 409
AfiI CCNNNNNNNGG 1 cut(s) 449
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 3 cut(s) 50, 181, 217
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 3 cut(s) 219, 517, 554
ApoI RAATTY 2 cut(s) 491, 566
Asp700I GAANNNNTTC 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 420
AsuC2I CCSGG 1 cut(s) 424
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 1 cut(s) 420
BccI CCATC 3 cut(s) 253, 311, 471
BceAI ACGGC 1 cut(s) 466
BcnI CCSGG 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 517
BlsI GCNGC 1 cut(s) 518
Bme1390I CCNGG 1 cut(s) 424
Bme18I GGWCC 1 cut(s) 420
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 424
BmsI GCATC 3 cut(s) 175, 223, 314
BpuMI CCSGG 1 cut(s) 424
BsaJI CCNNGG 2 cut(s) 289, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 449
BseDI CCNNGG 2 cut(s) 289, 378
BseGI GGATG 2 cut(s) 264, 299
BseLI CCNNNNNNNGG 1 cut(s) 449
BshFI GGCC 3 cut(s) 221, 519, 556
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 3 cut(s) 221, 519, 556
BsoBI CYCGRG 1 cut(s) 377
Bsp1407I TGTACA 1 cut(s) 407
BspACI CCGC 2 cut(s) 390, 516
BspANI GGCC 3 cut(s) 221, 519, 556
BsrGI TGTACA 1 cut(s) 407
BssECI CCNNGG 2 cut(s) 289, 378
BstAUI TGTACA 1 cut(s) 407
BstC8I GCNNGC 3 cut(s) 107, 304, 399
BstF5I GGATG 2 cut(s) 264, 299
BstMAI GTCTC 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 422
BstSFI CTRYAG 1 cut(s) 42
BsuRI GGCC 3 cut(s) 221, 519, 556
BtsCI GGATG 2 cut(s) 264, 299
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 3 cut(s) 107, 304, 399
Cfr13I GGNCC 1 cut(s) 420
Csp6I GTAC 2 cut(s) 69, 408
CviAII CATG 1 cut(s) 19
CviJI RGCY 5 cut(s) 221, 250, 354, 519, 556
CviKI_1 RGCY 5 cut(s) 221, 250, 354, 519, 556
CviQI GTAC 2 cut(s) 69, 408
DraI TTTAAA 1 cut(s) 502
EaeI YGGCCR 2 cut(s) 517, 554
Eco147I AGGCCT 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 420
Eco88I CYCGRG 1 cut(s) 377
FaeI CATG 1 cut(s) 22
FaiI YATR 5 cut(s) 20, 44, 80, 418, 535
FaqI GGGAC 1 cut(s) 439
FatI CATG 1 cut(s) 18
FauI CCCGC 1 cut(s) 383
Fnu4HI GCNGC 1 cut(s) 517
FokI GGATG 2 cut(s) 271, 306
Fsp4HI GCNGC 1 cut(s) 517
GluI GCNGC 1 cut(s) 517
HaeIII GGCC 3 cut(s) 221, 519, 556
HapII CCGG 1 cut(s) 423
Hin1II CATG 1 cut(s) 22
HinfI GANTC 1 cut(s) 439
HpaII CCGG 1 cut(s) 423
Hpy166II GTNNAC 1 cut(s) 408
Hpy188I TCNGA 2 cut(s) 27, 444
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 1 cut(s) 408
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 4 cut(s) 229, 302, 337, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 1 cut(s) 22
LpnPI CCDG 2 cut(s) 436, 541
LweI GCATC 3 cut(s) 175, 223, 314
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 2 cut(s) 523, 536
MboII GAAGA 3 cut(s) 62, 174, 373
MluCI AATT 4 cut(s) 411, 480, 491, 566
MlyI GAGTC 1 cut(s) 448
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 4 cut(s) 232, 284, 373, 384
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 4 cut(s) 479, 483, 488, 501
MspI CCGG 1 cut(s) 423
MspR9I CCNGG 1 cut(s) 424
MwoI GCNNNNNNNGC 1 cut(s) 115
NciI CCSGG 1 cut(s) 424
NlaIII CATG 1 cut(s) 22
NspI RCATGY 1 cut(s) 22
PacI TTAATTAA 1 cut(s) 483
PceI AGGCCT 1 cut(s) 221
PciI ACATGT 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 518
PleI GAGTC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 447
PscI ACATGT 1 cut(s) 18
PspPI GGNCC 1 cut(s) 420
RsaI GTAC 2 cut(s) 70, 409
RsaNI GTAC 2 cut(s) 69, 408
SaqAI TTAA 4 cut(s) 479, 483, 488, 501
SatI GCNGC 1 cut(s) 517
Sau96I GGNCC 1 cut(s) 420
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 1 cut(s) 424
SetI ASST 5 cut(s) 244, 252, 376, 384, 530
SfaNI GCATC 3 cut(s) 175, 223, 314
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 420
Sse9I AATT 4 cut(s) 411, 480, 491, 566
SseBI AGGCCT 1 cut(s) 221
SsiI CCGC 2 cut(s) 390, 516
StuI AGGCCT 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 422
TaiI ACGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 252
TasI AATT 4 cut(s) 411, 480, 491, 566
TatI WGTACW 1 cut(s) 407
TauI GCSGC 1 cut(s) 519
Tru1I TTAA 4 cut(s) 479, 483, 488, 501
Tru9I TTAA 4 cut(s) 479, 483, 488, 501
TscAI CASTG 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 271
TspRI CASTG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 420
XapI RAATTY 2 cut(s) 491, 566
XceI RCATGY 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.