Rroxscaffold_1G00069590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000100
Physical Location & Seq
Reverse (-)
90518474 .. 90521139
2666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069590.1

Sequence Viewer

Length: 543 bp
ATGGAAGAAAGTAAAAGAGGGAAAAAAGCAAAAGCAGAAAACGAAGATGAAGAAGAATCAAGTGAATATGAGGAAGGAACAACTGAAGATGAAGAAGAATCGATGAAGAACAAGTCCGGATCGGTTTTGCCACAAGACGGAAGTAGTGCCGCCAATCTCTGGAAGAGAAACAGAAAAACACGGAATAAGAAAGTGGCAATTAAAGACCCCGATAGAAAAAAATGGGATTTCAACACCATGGGGAAGTTGAAGAGTGAAGCAATTGGAGGGCATAGTGATGGCACTAACGAGAAGTATGAGTCTCCAATAGCACGTCCAGGTGATGACAACTACTCAACTCCTCCTCCACCACCACCTAGTTTCCCTCCACCAAAATCAAAGGCCCCTCGGGACAAGCCAACCGACGACAAGCACTCCAAAAACACAAAATCTCAAGCTGGAATTCAGAAACTCAATCACAACCTCGCCTACTCCACAACAAGCGCATTTGAGATGACATCTGCAGAACGACTCTACCAACCGAGGACATCGGTCACCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.1

Weight (kDa)

7.82

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 116
AciI CCGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 441
AcuI CTGAAG 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 137, 159
AgsI TTSAA 2 cut(s) 232, 250
AjiI CACGTC 1 cut(s) 314
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 1 cut(s) 437
AluI AGCT 1 cut(s) 437
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 1 cut(s) 127
Ama87I CYCGRG 1 cut(s) 387
Aor13HI TCCGGA 1 cut(s) 116
AoxI GGCC 1 cut(s) 381
ApoI RAATTY 1 cut(s) 441
AspLEI GCGC 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 382
AsuHPI GGTGA 2 cut(s) 332, 526
AvaI CYCGRG 1 cut(s) 387
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 501
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 318
BmeT110I CYCGRG 1 cut(s) 387
BmgBI CACGTC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 318
BoxI GACNNNNGTC 1 cut(s) 530
BpuEI CTTGAG 1 cut(s) 417
Bsa29I ATCGAT 1 cut(s) 101
BsaJI CCNNGG 3 cut(s) 237, 386, 521
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 4 cut(s) 328, 358, 398, 428
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 159
BseAI TCCGGA 1 cut(s) 116
BseBI CCWGG 1 cut(s) 318
BseCI ATCGAT 1 cut(s) 101
BseDI CCNNGG 3 cut(s) 237, 386, 521
BseLI CCNNNNNNNGG 2 cut(s) 137, 159
BseRI GAGGAG 2 cut(s) 330, 333
BshFI GGCC 1 cut(s) 383
BshVI ATCGAT 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 2 cut(s) 137, 159
BsmAI GTCTC 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 387
Bsp13I TCCGGA 1 cut(s) 116
Bsp143I GATC 1 cut(s) 119
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 1 cut(s) 150
BspANI GGCC 1 cut(s) 383
BspDI ATCGAT 1 cut(s) 101
BspEI TCCGGA 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 384
BspMAI CTGCAG 1 cut(s) 505
BspPI GGATC 1 cut(s) 127
BssECI CCNNGG 3 cut(s) 237, 386, 521
BssMI GATC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 318
Bst6I CTCTTC 2 cut(s) 158, 245
BstDSI CCRYGG 1 cut(s) 237
BstEII GGTNACC 1 cut(s) 532
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 1 cut(s) 122
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 318
BstPAI GACNNNNGTC 1 cut(s) 530
BstPI GGTNACC 1 cut(s) 532
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 501
Bsu15I ATCGAT 1 cut(s) 101
BsuRI GGCC 1 cut(s) 383
BsuTUI ATCGAT 1 cut(s) 101
BtgI CCRYGG 1 cut(s) 237
BtrI CACGTC 1 cut(s) 314
CfoI GCGC 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 382
ClaI ATCGAT 1 cut(s) 101
CviAII CATG 1 cut(s) 238
CviJI RGCY 3 cut(s) 383, 397, 437
CviKI_1 RGCY 3 cut(s) 383, 397, 437
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Eam1104I CTCTTC 2 cut(s) 158, 245
EarI CTCTTC 2 cut(s) 158, 245
Eco130I CCWWGG 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 387
Eco91I GGTNACC 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 382
EcoO65I GGTNACC 1 cut(s) 532
EcoRI GAATTC 1 cut(s) 441
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 1 cut(s) 241
FaiI YATR 4 cut(s) 69, 239, 273, 297
FaqI GGGAC 1 cut(s) 404
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 357
GlaI GCGC 1 cut(s) 484
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 383
HapII CCGG 1 cut(s) 117
HhaI GCGC 1 cut(s) 485
Hin1II CATG 1 cut(s) 241
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HinfI GANTC 4 cut(s) 56, 98, 299, 510
HpaII CCGG 1 cut(s) 117
HphI GGTGA 2 cut(s) 332, 526
Hpy188I TCNGA 1 cut(s) 447
Hpy188III TCNNGA 3 cut(s) 117, 160, 389
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 1 cut(s) 503
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 1 cut(s) 241
HspAI GCGC 1 cut(s) 483
Kpn2I TCCGGA 1 cut(s) 116
Kzo9I GATC 1 cut(s) 119
LpnPI CCDG 5 cut(s) 130, 145, 303, 330, 423
MaeI CTAG 1 cut(s) 357
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 532
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MfeI CAATTG 1 cut(s) 261
MluCI AATT 3 cut(s) 198, 261, 441
MlyI GAGTC 2 cut(s) 308, 504
MnlI CCTC 9 cut(s) 11, 64, 260, 351, 354, 375, 396, 473, 516
MroI TCCGGA 1 cut(s) 116
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 318
NcoI CCATGG 1 cut(s) 237
NdeII GATC 1 cut(s) 119
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 532
PfeI GAWTC 2 cut(s) 56, 98
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 2 cut(s) 307, 504
PpsI GAGTC 2 cut(s) 307, 504
PshAI GACNNNNGTC 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 316
PspEI GGTNACC 1 cut(s) 532
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 1 cut(s) 382
PstI CTGCAG 1 cut(s) 505
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 2 cut(s) 308, 504
ScrFI CCNGG 1 cut(s) 318
SetI ASST 5 cut(s) 316, 322, 358, 439, 465
SfcI CTRYAG 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
Sse9I AATT 3 cut(s) 198, 261, 441
SsiI CCGC 1 cut(s) 150
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 1 cut(s) 237
TaiI ACGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 101
TaqII GACCGA 1 cut(s) 520
TasI AATT 3 cut(s) 198, 261, 441
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 2 cut(s) 56, 98
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseFI GTSAC 1 cut(s) 532
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 3 cut(s) 63, 105, 119
TspGWI ACGGA 2 cut(s) 153, 196
Van91I CCANNNNNTGG 1 cut(s) 159
XapI RAATTY 1 cut(s) 441
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.