Rroxscaffold_1G00055120

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000100
Physical Location & Seq
Reverse (-)
76558555 .. 76560412
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00055120.1

Sequence Viewer

Length: 645 bp
ATGCCGAAAAAGGTGAGTTGGTCCCAAAGTCTTCGAGGGTGCATATCGTCCGACTTTATCCAGCAGTTTTTTTCAAACAAAGCGAGAATTAACAAGAGAGCCGTGGAGAATGCTCTGCAAGATGCGATCAAAGACAATCCAACAACAGAGGAAGGGATTGAGAAGAAGGACAAAAATGTGGCAAGATTAATCTTGCTGGACTTGTGCATAAAGTTTCTGTTCCCAAACGCAGGAGGAACAATTTCATGGCCTACGTCAAAGCTCTGCGAAAATTTGGATAAGATCAGATCTTATGACCGGGCGAGGGAAGTTGGAAACTTCTTTAAAAAGTCTATAAAGACTTTGAAAAAGAAAAAGGAGTCAAGCAGCCCATATGGTAATACGGGGGGATGCGTTGTGATAATACCGCATTTACGGGTGGGGAGATGTGAAAGCAAAACGACGAAGAAAGCAAAGGAGATTGAAGAGAGATTGAAAGATGCCGAAAAGAAAGAAAAAGAAAAGGATTTGAAGGCCTCACCGCAAGATGCCGAACGTAAAAAGCTAGAACGGATGGTAGCACAAACGAAGTTGGACGATTTACCGAGAGGATGTTCTGCAAGCAATAAGAGAGATGGACGATGCAGAAAATGCACAAATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

214

Amino Acids

24.31

Weight (kDa)

9.73

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 407, 521
AcsI RAATTY 1 cut(s) 271
AfiI CCNNNNNNNGG 2 cut(s) 230, 304
AgsI TTSAA 5 cut(s) 75, 346, 464, 475, 511
AluBI AGCT 2 cut(s) 262, 544
AluI AGCT 2 cut(s) 262, 544
AoxI GGCC 2 cut(s) 248, 513
ApeKI GCWGC 1 cut(s) 366
ApoI RAATTY 1 cut(s) 271
AseI ATTAAT 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 25, 510
AvaII GGWCC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 378
BccI CCATC 2 cut(s) 547, 608
BceAI ACGGC 1 cut(s) 86
BcnI CCSGG 1 cut(s) 299
BfaI CTAG 1 cut(s) 545
BglII AGATCT 1 cut(s) 287
BisI GCNGC 1 cut(s) 367
BlsI GCNGC 1 cut(s) 368
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 5 cut(s) 112, 380, 469, 517, 611
BpiI GAAGAC 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 304
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 3 cut(s) 395, 558, 596
BseLI CCNNNNNNNGG 2 cut(s) 230, 304
BseXI GCAGC 1 cut(s) 378
BshFI GGCC 2 cut(s) 250, 515
BsiSI CCGG 1 cut(s) 298
BslFI GGGAC 1 cut(s) 7
BslI CCNNNNNNNGG 2 cut(s) 230, 304
BsmFI GGGAC 1 cut(s) 7
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 2 cut(s) 250, 515
Bsp143I GATC 3 cut(s) 126, 282, 287
BspACI CCGC 2 cut(s) 407, 521
BspANI GGCC 2 cut(s) 250, 515
BspLI GGNNCC 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 3 cut(s) 126, 282, 287
Bst6I CTCTTC 1 cut(s) 459
BstAPI GCANNNNNTGC 1 cut(s) 630
BstC8I GCNNGC 1 cut(s) 601
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 3 cut(s) 395, 558, 596
BstKTI GATC 3 cut(s) 129, 285, 290
BstMBI GATC 3 cut(s) 126, 282, 287
BstMWI GCNNNNNNNGC 1 cut(s) 630
BstSCI CCNGG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 378
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BsuRI GGCC 2 cut(s) 250, 515
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 3 cut(s) 395, 558, 596
Cac8I GCNNGC 1 cut(s) 601
Cfr13I GGNCC 1 cut(s) 21
CviAII CATG 1 cut(s) 246
CviJI RGCY 6 cut(s) 101, 250, 262, 369, 515, 544
CviKI_1 RGCY 6 cut(s) 101, 250, 262, 369, 515, 544
DpnI GATC 3 cut(s) 128, 284, 289
DpnII GATC 3 cut(s) 126, 282, 287
DraI TTTAAA 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco147I AGGCCT 1 cut(s) 515
Eco47I GGWCC 1 cut(s) 21
FaeI CATG 1 cut(s) 249
FaiI YATR 7 cut(s) 44, 209, 247, 294, 335, 373, 375
FaqI GGGAC 1 cut(s) 7
FatI CATG 1 cut(s) 245
FauNDI CATATG 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 367
FokI GGATG 3 cut(s) 402, 565, 603
Fsp4HI GCNGC 1 cut(s) 367
FspBI CTAG 1 cut(s) 545
GluI GCNGC 1 cut(s) 367
HaeIII GGCC 2 cut(s) 250, 515
HapII CCGG 1 cut(s) 298
Hin1II CATG 1 cut(s) 249
HinfI GANTC 1 cut(s) 359
HpaII CCGG 1 cut(s) 298
HphI GGTGA 2 cut(s) 25, 510
Hpy188I TCNGA 2 cut(s) 52, 287
Hpy99I CGWCG 1 cut(s) 445
HpyAV CCTTC 3 cut(s) 146, 160, 505
HpyCH4IV ACGT 2 cut(s) 254, 535
HpyCH4V TGCA 6 cut(s) 42, 118, 207, 599, 624, 633
HpyF10VI GCNNNNNNNGC 1 cut(s) 630
HpySE526I ACGT 2 cut(s) 254, 535
Hsp92II CATG 1 cut(s) 249
Kzo9I GATC 3 cut(s) 126, 282, 287
LpnPI CCDG 4 cut(s) 74, 182, 216, 311
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 5 cut(s) 112, 380, 469, 517, 611
MaeI CTAG 1 cut(s) 545
MaeII ACGT 2 cut(s) 254, 535
MalI GATC 3 cut(s) 128, 284, 289
MboI GATC 3 cut(s) 126, 282, 287
MboII GAAGA 4 cut(s) 23, 175, 457, 476
MflI RGATCY 1 cut(s) 287
MluCI AATT 3 cut(s) 87, 240, 271
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 4 cut(s) 75, 164, 292, 552
MnlI CCTC 6 cut(s) 29, 142, 227, 297, 526, 581
MroXI GAANNNNTTC 1 cut(s) 241
MseI TTAA 3 cut(s) 90, 188, 324
MspI CCGG 1 cut(s) 298
MspR9I CCNGG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 630
NciI CCSGG 1 cut(s) 299
NdeI CATATG 1 cut(s) 373
NdeII GATC 3 cut(s) 126, 282, 287
NlaIII CATG 1 cut(s) 249
NlaIV GGNNCC 1 cut(s) 23
PceI AGGCCT 1 cut(s) 515
PctI GAATGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 368
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PshBI ATTAAT 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 1 cut(s) 21
PsuI RGATCY 1 cut(s) 287
SaqAI TTAA 3 cut(s) 90, 188, 324
SatI GCNGC 1 cut(s) 367
Sau3AI GATC 3 cut(s) 126, 282, 287
Sau96I GGNCC 1 cut(s) 21
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 299
SetI ASST 5 cut(s) 15, 257, 264, 538, 546
SfaNI GCATC 5 cut(s) 112, 380, 469, 517, 611
SinI GGWCC 1 cut(s) 21
Sse9I AATT 3 cut(s) 87, 240, 271
SseBI AGGCCT 1 cut(s) 515
SsiI CCGC 2 cut(s) 407, 521
SspMI CTAG 1 cut(s) 545
StuI AGGCCT 1 cut(s) 515
StyD4I CCNGG 1 cut(s) 297
TaiI ACGT 2 cut(s) 257, 538
TaqI TCGA 1 cut(s) 34
TasI AATT 3 cut(s) 87, 240, 271
Tru1I TTAA 3 cut(s) 90, 188, 324
Tru9I TTAA 3 cut(s) 90, 188, 324
TseI GCWGC 1 cut(s) 366
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 565
VpaK11BI GGWCC 1 cut(s) 21
VspI ATTAAT 1 cut(s) 188
XapI RAATTY 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 241
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.