Rroxscaffold_1G00015980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000100
Physical Location & Seq
Forward (+)
19883144 .. 19883860
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015980.1

Sequence Viewer

Length: 717 bp
ATGGAGGATGTATTATTGGAAAATGAGGTGCTGAAAATTGAGAAAGCCTCAATGATTGAAAGAGGGAAAATTGGCAGAACGGACGAAGAGAAGGATGATGTGTTAATGGAAAATGAGGTGCTGAAAGTTGAGAGAGCCTCACCGATTAAAAGAGTGAAGCAATTGGAGGGCATAGTGATGGCACTAACCGAGAAGTATGAGTCTCCAATAGCACGTCCAGGTGATGACAACTACTCAACTCCTCCTCCACCACCACCTAGTTTCCCTCCACCAAAATCAAAGGCCCCTCAGACAAGCCAACCGACAAACAAGCACTCCAAAAACACAAAATCTCAAGCTGGAATTCAGGAAACTCAATCACAACCTCGCCTACTCCACACAAGCGCATCCGAGATGACATCCGCAGAACTCGACTCTACCAACCGAGGACATCGCTCACCACTTGAATGCCTTGCCCAAGTAGCTGCACAAATTCATTCACCAACCTCTCCCGAGGTTAAATTGAGAATGGCGGAAGATGCTTGCACACCGAATACCGCTTGGGTTAATGCATTGTTTGTGTTTCCACCTCCGGCTCGTTACAAACGCCACCTCCAAGAAAAGTCCGTTTGGAAGATATGCAAGCGAGCCACAAAAGTATCGCATCATTATATCGCCGAAGTTCAGCTGTTTTTGACATTGAACCAATCAATTGCTTTCATCATAAGGAACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.75

Weight (kDa)

8.9

Isoelectric Point (pI)

62.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 402, 512, 537
AcsI RAATTY 2 cut(s) 342, 471
AgsI TTSAA 3 cut(s) 59, 446, 682
AjiI CACGTC 1 cut(s) 215
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 3 cut(s) 338, 464, 667
AluI AGCT 3 cut(s) 338, 464, 667
Alw26I GTCTC 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 491
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 2 cut(s) 342, 471
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 283
AsuHPI GGTGA 4 cut(s) 132, 233, 429, 471
AvaI CYCGRG 1 cut(s) 491
BaeI ACNNNNGTAYC 2 cut(s) 621, 654
BbvI GCAGC 1 cut(s) 451
BccI CCATC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 465
BlsI GCNGC 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 491
BmgBI CACGTC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 3 cut(s) 395, 508, 652
BplI GAGNNNNNCTC 4 cut(s) 32, 64, 122, 154
BpuEI CTTGAG 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 424, 492
BsaXI ACNNNNNCTCC 6 cut(s) 229, 259, 299, 329, 576, 606
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 424, 492
BseGI GGATG 4 cut(s) 13, 100, 386, 398
BseMII CTCAG 1 cut(s) 302
BseRI GAGGAG 2 cut(s) 231, 234
BseXI GCAGC 1 cut(s) 451
BsgI GTGCAG 1 cut(s) 450
BshFI GGCC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 491
BsiSI CCGG 1 cut(s) 572
BsmAI GTCTC 1 cut(s) 207
BsmI GAATGC 1 cut(s) 452
BsnI GGCC 1 cut(s) 284
BsoBI CYCGRG 1 cut(s) 491
BspACI CCGC 3 cut(s) 402, 512, 537
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 285
BssECI CCNNGG 2 cut(s) 424, 492
Bst2UI CCWGG 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 81
BstC8I GCNNGC 3 cut(s) 523, 623, 627
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 4 cut(s) 13, 100, 386, 398
BstHHI GCGC 1 cut(s) 386
BstMAI GTCTC 1 cut(s) 207
BstMWI GCNNNNNNNGC 2 cut(s) 461, 518
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 451
BsuRI GGCC 1 cut(s) 284
BtgZI GCGATG 1 cut(s) 416
BtrI CACGTC 1 cut(s) 215
BtsCI GGATG 4 cut(s) 13, 100, 386, 398
Cac8I GCNNGC 3 cut(s) 523, 623, 627
CfoI GCGC 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 283
CviJI RGCY 9 cut(s) 47, 137, 284, 297, 338, 464, 575, 629, 667
CviKI_1 RGCY 9 cut(s) 47, 137, 284, 297, 338, 464, 575, 629, 667
DdeI CTNAG 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
EciI GGCGGA 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 491
EcoO109I RGGNCCY 1 cut(s) 283
EcoRI GAATTC 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 217
EcoT22I ATGCAT 1 cut(s) 553
FaiI YATR 5 cut(s) 173, 198, 619, 651, 704
Fnu4HI GCNGC 1 cut(s) 465
FokI GGATG 4 cut(s) 20, 107, 373, 385
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 385
GluI GCNGC 1 cut(s) 465
HaeIII GGCC 1 cut(s) 284
HapII CCGG 1 cut(s) 572
HhaI GCGC 1 cut(s) 386
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HinfI GANTC 2 cut(s) 200, 413
HpaII CCGG 1 cut(s) 572
HphI GGTGA 4 cut(s) 132, 233, 429, 471
Hpy188I TCNGA 2 cut(s) 291, 391
Hpy188III TCNNGA 2 cut(s) 347, 491
HpyAV CCTTC 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 4 cut(s) 467, 525, 551, 621
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 518
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 214
HspAI GCGC 1 cut(s) 384
LpnPI CCDG 5 cut(s) 204, 231, 324, 332, 585
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 3 cut(s) 395, 508, 652
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 578
MboII GAAGA 3 cut(s) 98, 527, 625
MfeI CAATTG 2 cut(s) 161, 690
MluCI AATT 7 cut(s) 36, 69, 161, 342, 471, 500, 690
MlyI GAGTC 2 cut(s) 209, 407
Mph1103I ATGCAT 1 cut(s) 553
MseI TTAA 4 cut(s) 104, 147, 498, 546
MslI CAYNNNNRTG 2 cut(s) 176, 445
MspA1I CMGCKG 1 cut(s) 667
MspI CCGG 1 cut(s) 572
MspR9I CCNGG 1 cut(s) 219
MunI CAATTG 2 cut(s) 161, 690
Mva1269I GAATGC 1 cut(s) 452
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 461, 518
NlaIV GGNNCC 1 cut(s) 285
NsiI ATGCAT 1 cut(s) 553
PctI GAATGC 1 cut(s) 452
PkrI GCNGC 1 cut(s) 466
PleI GAGTC 2 cut(s) 208, 407
PpsI GAGTC 2 cut(s) 208, 407
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 283
PvuII CAGCTG 1 cut(s) 667
RseI CAYNNNNRTG 2 cut(s) 176, 445
SaqAI TTAA 4 cut(s) 104, 147, 498, 546
SatI GCNGC 1 cut(s) 465
Sau96I GGNCC 1 cut(s) 283
SchI GAGTC 2 cut(s) 209, 407
ScrFI CCNGG 1 cut(s) 219
SfaNI GCATC 3 cut(s) 395, 508, 652
SmiMI CAYNNNNRTG 2 cut(s) 176, 445
SmlI CTYRAG 1 cut(s) 333
SmoI CTYRAG 1 cut(s) 333
Sse9I AATT 7 cut(s) 36, 69, 161, 342, 471, 500, 690
SsiI CCGC 3 cut(s) 402, 512, 537
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 217
TaiI ACGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 411
TasI AATT 7 cut(s) 36, 69, 161, 342, 471, 500, 690
Tru1I TTAA 4 cut(s) 104, 147, 498, 546
Tru9I TTAA 4 cut(s) 104, 147, 498, 546
TseI GCWGC 1 cut(s) 464
TspDTI ATGAA 2 cut(s) 464, 688
TspGWI ACGGA 2 cut(s) 95, 595
XapI RAATTY 2 cut(s) 342, 471
XspI CTAG 1 cut(s) 258
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.