Rroxscaffold_6G00390410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000100
Physical Location & Seq
Forward (+)
5407723 .. 5409523
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390410.1

Sequence Viewer

Length: 615 bp
ATGGCGAGGTTGCGTGATATTGGTGATGAGAAGGATGATGTGTTAATGGAAAATGAGGTGCTGAAAGTTGAGAGAGCCTCACCGATTAAAAGAGTGAAGCAATTAGAGGGCATAGTGATGGCACTAAGCGAGAAGTATGAGTCTCCAATAGCACGTCCAGGTGATGACAACTACTCAACTCCTCCTCCACCACCACCTAGTTTCCCTCCACCAAAATCAAAGGCCCCTCGGGACAAGCCAACCGACAGCAAGCACTCCAAAAACACAAAATCTCAAGCCGGAATTCAGGAAACTCAATCACAACCCGTCTACTCCACAGCAAGCGCATACGAGATGACATCTGCAGAACTTGACTCTACCAACCGAGGACATCGGTCACCACTTGAATGCCTTGCCCAAGTAGCTGCACAAATTCATTCACCAACCTCTCCCGAGGTTAAATTGAGAATGGCGGAAGATGCTTGCACACCGAATACGCTTGGGTTAATGCATTGTTTGTGTTTCCACCTCCGGCTCGTTACAAACGCCACCTCCAAGAAAAGTCCGTTTGGAAGATATGCAAGCGAGCCACAAAAGTATCGGATCATTATATCACCGAAGTTCGACTGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.64

Weight (kDa)

8.54

Isoelectric Point (pI)

63.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 309
AciI CCGC 1 cut(s) 452
AclWI GGATC 1 cut(s) 590
AcsI RAATTY 2 cut(s) 282, 411
AgsI TTSAA 1 cut(s) 386
AjiI CACGTC 1 cut(s) 155
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 1 cut(s) 404
AluI AGCT 1 cut(s) 404
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 590
Ama87I CYCGRG 2 cut(s) 228, 431
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 2 cut(s) 282, 411
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 6 cut(s) 35, 72, 173, 369, 411, 585
AvaI CYCGRG 2 cut(s) 228, 431
BaeI ACNNNNGTAYC 2 cut(s) 560, 593
BbvI GCAGC 1 cut(s) 391
BccI CCATC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 342
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
Bme1390I CCNGG 1 cut(s) 159
BmeT110I CYCGRG 2 cut(s) 228, 431
BmgBI CACGTC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 448
BoxI GACNNNNGTC 1 cut(s) 373
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpuEI CTTGAG 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 227, 364, 432
BsaXI ACNNNNNCTCC 4 cut(s) 169, 199, 515, 545
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 3 cut(s) 227, 364, 432
BseGI GGATG 1 cut(s) 40
BseRI GAGGAG 2 cut(s) 171, 174
BseXI GCAGC 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 390
BshFI GGCC 1 cut(s) 224
BsiHKCI CYCGRG 2 cut(s) 228, 431
BsiSI CCGG 2 cut(s) 279, 511
BslFI GGGAC 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 1 cut(s) 224
BsoBI CYCGRG 2 cut(s) 228, 431
Bsp143I GATC 1 cut(s) 582
BspACI CCGC 1 cut(s) 452
BspANI GGCC 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 225
BspMAI CTGCAG 1 cut(s) 346
BspPI GGATC 1 cut(s) 590
BssECI CCNNGG 3 cut(s) 227, 364, 432
BssMI GATC 1 cut(s) 582
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 608
BstC8I GCNNGC 5 cut(s) 251, 322, 463, 562, 566
BstDEI CTNAG 1 cut(s) 125
BstEII GGTNACC 1 cut(s) 375
BstF5I GGATG 1 cut(s) 40
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 1 cut(s) 585
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 582
BstMWI GCNNNNNNNGC 2 cut(s) 401, 458
BstNI CCWGG 1 cut(s) 159
BstPAI GACNNNNGTC 1 cut(s) 373
BstPI GGTNACC 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 391
BsuRI GGCC 1 cut(s) 224
BtrI CACGTC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 40
Cac8I GCNNGC 5 cut(s) 251, 322, 463, 562, 566
CfoI GCGC 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 223
CviJI RGCY 7 cut(s) 77, 224, 238, 278, 404, 514, 568
CviKI_1 RGCY 7 cut(s) 77, 224, 238, 278, 404, 514, 568
DdeI CTNAG 1 cut(s) 125
DpnI GATC 1 cut(s) 584
DpnII GATC 1 cut(s) 582
EciI GGCGGA 1 cut(s) 467
Eco88I CYCGRG 2 cut(s) 228, 431
Eco91I GGTNACC 1 cut(s) 375
EcoO109I RGGNCCY 1 cut(s) 223
EcoO65I GGTNACC 1 cut(s) 375
EcoRI GAATTC 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 492
FaiI YATR 5 cut(s) 113, 138, 328, 558, 590
FaqI GGGAC 1 cut(s) 245
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 325
GluI GCNGC 1 cut(s) 405
HaeIII GGCC 1 cut(s) 224
HapII CCGG 2 cut(s) 279, 511
HhaI GCGC 1 cut(s) 326
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HinfI GANTC 2 cut(s) 140, 353
HpaII CCGG 2 cut(s) 279, 511
HphI GGTGA 6 cut(s) 35, 72, 173, 369, 411, 585
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 582
Hpy188III TCNNGA 3 cut(s) 230, 287, 431
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 608
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 5 cut(s) 344, 407, 465, 490, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 458
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 154
HspAI GCGC 1 cut(s) 324
Kzo9I GATC 1 cut(s) 582
LpnPI CCDG 5 cut(s) 144, 171, 272, 292, 524
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 1 cut(s) 448
MaeI CTAG 1 cut(s) 198
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 2 cut(s) 375, 517
MalI GATC 1 cut(s) 584
MboI GATC 1 cut(s) 582
MboII GAAGA 2 cut(s) 467, 564
MluCI AATT 4 cut(s) 101, 282, 411, 440
MlyI GAGTC 2 cut(s) 149, 347
Mph1103I ATGCAT 1 cut(s) 492
MseI TTAA 4 cut(s) 44, 87, 438, 485
MslI CAYNNNNRTG 2 cut(s) 116, 385
MspI CCGG 2 cut(s) 279, 511
MspR9I CCNGG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 392
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 401, 458
NdeII GATC 1 cut(s) 582
NlaIV GGNNCC 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 375
NsiI ATGCAT 1 cut(s) 492
PctI GAATGC 1 cut(s) 392
PkrI GCNGC 1 cut(s) 406
PleI GAGTC 2 cut(s) 148, 347
PpsI GAGTC 2 cut(s) 148, 347
PshAI GACNNNNGTC 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 157
PspEI GGTNACC 1 cut(s) 375
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 223
PstI CTGCAG 1 cut(s) 346
RseI CAYNNNNRTG 2 cut(s) 116, 385
SaqAI TTAA 4 cut(s) 44, 87, 438, 485
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 1 cut(s) 582
Sau96I GGNCC 1 cut(s) 223
SchI GAGTC 2 cut(s) 149, 347
ScrFI CCNGG 1 cut(s) 159
SfaNI GCATC 1 cut(s) 448
SfcI CTRYAG 1 cut(s) 342
SmiMI CAYNNNNRTG 2 cut(s) 116, 385
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 4 cut(s) 101, 282, 411, 440
SsiI CCGC 1 cut(s) 452
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 608
TaiI ACGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 603
TaqII GACCGA 1 cut(s) 363
TasI AATT 4 cut(s) 101, 282, 411, 440
Tru1I TTAA 4 cut(s) 44, 87, 438, 485
Tru9I TTAA 4 cut(s) 44, 87, 438, 485
TseFI GTSAC 1 cut(s) 375
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 375
TspDTI ATGAA 1 cut(s) 404
TspGWI ACGGA 1 cut(s) 534
XapI RAATTY 2 cut(s) 282, 411
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 1 cut(s) 198
Zsp2I ATGCAT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.