Rmu_sc0002202.1_g000002

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002202.1
OG0000100
Physical Location & Seq
Forward (+)
3396 .. 6898
3503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002202.1_g000002.1.cds

Sequence Viewer

Length: 2115 bp
atgttgctgtcgccaatgacctttggcgacggcaaaatcgctgatggcgtcgccattatgccgtcgccaaaatcatgcgacggcgtaaataccgtggccaaaattcatgcgacggcgtatttgccgtcgctaatagcaatggcgacgccaccaacgacatcggcaattttgccgtcgcctagccgtcgccgttggtcttttgcgacggcaatttggcttttggcgacggccttgcgccgtggccaatcgaattcttttttgcaatcgccatttggaaatattgtcgatgcattccatggtggctacatagaggagaagtcagccaagaaatctgatgatttcattacactcctcctgcaggcctacgaccatgaaaaggacctcttcttctttggaaagaagaaattcaggatctcgacaagaaatatttcaaagatcctaggaaggccagcaaaaggtgatctggtcccaaagacgtctgagggtgcatatcagtcagactttgtccaggagttttttccaaagaaaccaagaattaacaagaaagccgtggagaaagctctgcaagatgcgctcaaagacaagccaacaacagaggaagggattgggaagaaggacaaaaatgtggcaagattaatcttgctggacttgtcaatcaagtttctgttcccaaacgcaggaggaacaatttcatgggactacgtcaaagcctgcaaaaatttggataagattggatcttatgactgggcaagggaagttggaagcttcttaaaaaagtctataaagactttgaaaaagaaaaatgagtcaagcagcccatatggtaatatggggggctgcgttctgataatactggaggatagagatgaatcagaatccgagaaagaggagaatagatcagatgaagcaaagacagctccagaaggagaggaaaaaggagctgatgatcagaattgtgaaaacgaagaagatatcatagaagttgaggtggctgaacatgaaacaacttcagaaaaaaacaagttgaaagagcttcagaaaaaggaggagataagatgtatgactgtggagaaagataatttgaagaaaaaactgaacgaaaaggaacaggaactagagaaaatcacggaggaaatggtgaatctggaggagcgaaatgctacacttgtgaccgagaatatctgccttgcatcatcgcacagctccccaccacctaactcaacagaagaaaaaaatgaatcaaatggagctgcatctaaggctgctgaaaacacagaaaagaaagataaatcgactgttgaggaaggtcagtcccatgggatctgcacagtcgaagaatctgcagccgcagcagctcaatctccacctcactgcacagtgtcagaagaaagtcaatcgacacctccatcacataaggactcacagttccagagccccacagtccacatgcccacagtggcgggaatggaacaacaacctgacatgttccagatagtgaaaagtcctaactgcacagtggcagaagaaagtcaatcgacacctccatcacacaaggactcacagttccagagccccacagtctacaggcccacagtggcggaaatggaacaacaacctgacatgtttcagatagtgaaaagtcctatagttgcacaagcatttccacttcgtacgttgagcatagagaaagagcagaagacaccagagcatagcaaaaagggcgagttaacaatgcaccttacagagcaacattccggtgaaacggtatcatcaatgggtctctactcttacgttgtgagattgaagaataagagaagaatacagaaaaaggacaacatttactggtggggagatgtgaaagcaaaatgccagaagaaagcaaaggagattgaagagagattgagagatgctgaaaagaaagaaagagaaaaggagacgaaggcctcactgacacctgctgaacttgaaaaactagaacagatggtagcacaacagaagttggacaatttaccagaggatgttctgcaagcaataaaagagatggaggctgaagatcaagcacgaatcaatgaagagccaaaagagaaacagctccctcctgaggtcgtagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

704

Amino Acids

78.81

Weight (kDa)

5.63

Isoelectric Point (pI)

65.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1963
AatII GACGTC 1 cut(s) 479
Acc36I ACCTGC 1 cut(s) 1963
AccI GTMKAC 2 cut(s) 1581, 2109
AciI CCGC 3 cut(s) 1347, 1460, 1598
AclWI GGATC 4 cut(s) 419, 430, 742, 1328
AcoI YGGCCR 2 cut(s) 96, 241
AcsI RAATTY 4 cut(s) 102, 250, 404, 718
AcuI CTGAAG 3 cut(s) 993, 1019, 2070
AcyI GRCGYC 3 cut(s) 48, 146, 476
AfaI GTAC 1 cut(s) 1672
AfiI CCNNNNNNNGG 5 cut(s) 358, 376, 455, 677, 2101
AflIII ACRYGT 2 cut(s) 1482, 1620
AgsI TTSAA 7 cut(s) 432, 793, 1027, 1084, 1804, 1892, 1967
AjnI CCWGG 1 cut(s) 507
AloI GAACNNNNNNTCC 4 cut(s) 1409, 1441, 1547, 1579
AluBI AGCT 9 cut(s) 560, 765, 917, 941, 1033, 1203, 1250, 1355, 2092
AluI AGCT 9 cut(s) 560, 765, 917, 941, 1033, 1203, 1250, 1355, 2092
Alw26I GTCTC 2 cut(s) 1784, 1928
AlwI GGATC 4 cut(s) 419, 430, 742, 1328
AoxI GGCC 7 cut(s) 96, 228, 241, 360, 446, 1586, 1941
ApeKI GCWGC 7 cut(s) 813, 837, 1250, 1262, 1343, 1349, 1352
ApoI RAATTY 4 cut(s) 102, 250, 404, 718
ArsI GACNNNNNNTTYG 2 cut(s) 103, 135
AseI ATTAAT 1 cut(s) 635
Asp700I GAANNNNTTC 3 cut(s) 404, 427, 688
AspA2I CCTAGG 1 cut(s) 439
AspLEI GCGC 2 cut(s) 237, 574
AspS9I GGNCC 3 cut(s) 379, 466, 1587
AsuHPI GGTGA 3 cut(s) 470, 1150, 1769
AvaII GGWCC 2 cut(s) 379, 466
AvrII CCTAGG 1 cut(s) 439
AxyI CCTNAGG 1 cut(s) 2100
BalI TGGCCA 2 cut(s) 98, 243
BanII GRGCYC 2 cut(s) 1436, 1574
BbsI GAAGAC 1 cut(s) 1703
BbvI GCAGC 7 cut(s) 824, 825, 1237, 1249, 1355, 1361, 1364
BccI CCATC 5 cut(s) 38, 1414, 1552, 1975, 2035
BcgI CGANNNNNNTGC 4 cut(s) 214, 248, 1322, 1356
BciT130I CCWGG 1 cut(s) 509
BclI TGATCA 1 cut(s) 946
BcoDI GTCTC 2 cut(s) 1784, 1928
BfaI CTAG 5 cut(s) 180, 440, 1115, 1973, 2113
BfmI CTRYAG 4 cut(s) 356, 1341, 1582, 1644
BfuAI ACCTGC 1 cut(s) 1963
BisI GCNGC 8 cut(s) 814, 838, 1251, 1263, 1344, 1347, 1350, 1353
BlnI CCTAGG 1 cut(s) 439
BlsI GCNGC 8 cut(s) 815, 839, 1252, 1264, 1345, 1348, 1351, 1354
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 2 cut(s) 379, 466
BmgT120I GGNCC 3 cut(s) 379, 466, 1587
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 1 cut(s) 509
BmrI ACTGGG 1 cut(s) 754
BmsI GCATC 5 cut(s) 277, 559, 1199, 1262, 1897
BmuI ACTGGG 1 cut(s) 754
BpiI GAAGAC 1 cut(s) 1703
BpmI CTGGAG 3 cut(s) 875, 903, 1166
BsaHI GRCGYC 3 cut(s) 48, 146, 476
BsaI GGTCTC 1 cut(s) 1784
BsaJI CCNNGG 6 cut(s) 93, 238, 295, 439, 549, 1315
BsaWI WCCGGW 1 cut(s) 1754
Bsc4I CCNNNNNNNGG 5 cut(s) 358, 376, 455, 677, 2101
Bse1I ACTGG 3 cut(s) 749, 858, 1847
Bse21I CCTNAGG 1 cut(s) 2100
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 6 cut(s) 93, 238, 295, 439, 549, 1315
BseGI GGATG 1 cut(s) 2023
BseLI CCNNNNNNNGG 5 cut(s) 358, 376, 455, 677, 2101
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 471, 2091
BseNI ACTGG 3 cut(s) 749, 858, 1847
BseRI GAGGAG 5 cut(s) 326, 341, 902, 1061, 1163
BseXI GCAGC 7 cut(s) 824, 825, 1237, 1249, 1355, 1361, 1364
BsgI GTGCAG 3 cut(s) 1309, 1357, 1495
BshFI GGCC 7 cut(s) 98, 230, 243, 362, 448, 1588, 1943
BsiSI CCGG 1 cut(s) 1755
BsiWI CGTACG 1 cut(s) 1670
BslFI GGGAC 3 cut(s) 452, 710, 1297
BslI CCNNNNNNNGG 5 cut(s) 358, 376, 455, 677, 2101
BsmAI GTCTC 2 cut(s) 1784, 1928
BsmBI CGTCTC 1 cut(s) 1928
BsmFI GGGAC 3 cut(s) 452, 710, 1297
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 7 cut(s) 98, 230, 243, 362, 448, 1588, 1943
Bso31I GGTCTC 1 cut(s) 1784
Bsp1286I GDGCHC 2 cut(s) 1436, 1574
Bsp143I GATC 8 cut(s) 411, 435, 460, 734, 896, 946, 1320, 2053
Bsp19I CCATGG 2 cut(s) 295, 1315
BspACI CCGC 3 cut(s) 1347, 1460, 1598
BspANI GGCC 7 cut(s) 98, 230, 243, 362, 448, 1588, 1943
BspCNI CTCAG 2 cut(s) 472, 2092
BspLI GGNNCC 1 cut(s) 468
BspMAI CTGCAG 2 cut(s) 360, 1345
BspMI ACCTGC 1 cut(s) 1963
BspPI GGATC 4 cut(s) 419, 430, 742, 1328
BspQI GCTCTTC 1 cut(s) 2067
BspTNI GGTCTC 1 cut(s) 1784
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 3 cut(s) 749, 858, 1847
BssECI CCNNGG 6 cut(s) 93, 238, 295, 439, 549, 1315
BssMI GATC 8 cut(s) 411, 435, 460, 734, 896, 946, 1320, 2053
BssNI GRCGYC 3 cut(s) 48, 146, 476
BssT1I CCWWGG 3 cut(s) 295, 439, 1315
Bst2UI CCWGG 1 cut(s) 509
Bst6I CTCTTC 3 cut(s) 389, 1887, 2067
BstACI GRCGYC 3 cut(s) 48, 146, 476
BstC8I GCNNGC 4 cut(s) 360, 450, 712, 2028
BstDEI CTNAG 3 cut(s) 480, 1257, 2100
BstDSI CCRYGG 5 cut(s) 93, 238, 295, 549, 1315
BstENI CCTNNNNNAGG 1 cut(s) 356
BstF5I GGATG 1 cut(s) 2023
BstHHI GCGC 2 cut(s) 237, 574
BstKTI GATC 8 cut(s) 414, 438, 463, 737, 899, 949, 1323, 2056
BstMAI GTCTC 2 cut(s) 1784, 1928
BstMBI GATC 8 cut(s) 411, 435, 460, 734, 896, 946, 1320, 2053
BstMWI GCNNNNNNNGC 6 cut(s) 571, 914, 1259, 1349, 1352, 1719
BstNI CCWGG 1 cut(s) 509
BstNSI RCATGY 3 cut(s) 1450, 1486, 1624
BstSCI CCNGG 1 cut(s) 507
BstSFI CTRYAG 4 cut(s) 356, 1341, 1582, 1644
BstV1I GCAGC 7 cut(s) 824, 825, 1237, 1249, 1355, 1361, 1364
BstV2I GAAGAC 1 cut(s) 1703
BstX2I RGATCY 4 cut(s) 411, 435, 734, 1320
BstYI RGATCY 4 cut(s) 411, 435, 734, 1320
Bsu36I CCTNAGG 1 cut(s) 2100
BsuRI GGCC 7 cut(s) 98, 230, 243, 362, 448, 1588, 1943
BtgI CCRYGG 5 cut(s) 93, 238, 295, 549, 1315
BtgZI GCGATG 1 cut(s) 1179
BtsCI GGATG 1 cut(s) 2023
BtsI GCAGTG 1 cut(s) 1369
BtsIMutI CAGTG 6 cut(s) 1369, 1383, 1461, 1521, 1599, 1946
BveI ACCTGC 1 cut(s) 1963
Cac8I GCNNGC 4 cut(s) 360, 450, 712, 2028
CfoI GCGC 2 cut(s) 237, 574
Cfr13I GGNCC 3 cut(s) 379, 466, 1587
CseI GACGC 2 cut(s) 37, 154
Csp6I GTAC 1 cut(s) 1671
CviQI GTAC 1 cut(s) 1671
DdeI CTNAG 3 cut(s) 480, 1257, 2100
DpnI GATC 8 cut(s) 413, 437, 462, 736, 898, 948, 1322, 2055
DpnII GATC 8 cut(s) 411, 435, 460, 734, 896, 946, 1320, 2053
EaeI YGGCCR 2 cut(s) 96, 241
Eam1104I CTCTTC 3 cut(s) 389, 1887, 2067
EarI CTCTTC 3 cut(s) 389, 1887, 2067
EciI GGCGGA 1 cut(s) 1613
Eco130I CCWWGG 3 cut(s) 295, 439, 1315
Eco147I AGGCCT 2 cut(s) 362, 1943
Eco24I GRGCYC 2 cut(s) 1436, 1574
Eco31I GGTCTC 1 cut(s) 1784
Eco32I GATATC 1 cut(s) 973
Eco47I GGWCC 2 cut(s) 379, 466
Eco57I CTGAAG 3 cut(s) 993, 1019, 2070
Eco81I CCTNAGG 1 cut(s) 2100
EcoNI CCTNNNNNAGG 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 507
EcoRV GATATC 1 cut(s) 973
EcoT14I CCWWGG 3 cut(s) 295, 439, 1315
EcoT22I ATGCAT 1 cut(s) 292
EcoT38I GRGCYC 2 cut(s) 1436, 1574
ErhI CCWWGG 3 cut(s) 295, 439, 1315
Esp3I CGTCTC 1 cut(s) 1928
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 3 cut(s) 452, 710, 1297
FauI CCCGC 1 cut(s) 1453
FauNDI CATATG 1 cut(s) 820
FbaI TGATCA 1 cut(s) 946
FblI GTMKAC 2 cut(s) 1581, 2109
Fnu4HI GCNGC 8 cut(s) 814, 838, 1251, 1263, 1344, 1347, 1350, 1353
FokI GGATG 1 cut(s) 2030
FriOI GRGCYC 2 cut(s) 1436, 1574
Fsp4HI GCNGC 8 cut(s) 814, 838, 1251, 1263, 1344, 1347, 1350, 1353
FspBI CTAG 5 cut(s) 180, 440, 1115, 1973, 2113
GlaI GCGC 2 cut(s) 236, 573
GluI GCNGC 8 cut(s) 814, 838, 1251, 1263, 1344, 1347, 1350, 1353
GsuI CTGGAG 3 cut(s) 875, 903, 1166
HaeIII GGCC 7 cut(s) 98, 230, 243, 362, 448, 1588, 1943
HapII CCGG 1 cut(s) 1755
HgaI GACGC 2 cut(s) 37, 154
HhaI GCGC 2 cut(s) 237, 574
Hin1I GRCGYC 3 cut(s) 48, 146, 476
Hin6I GCGC 2 cut(s) 235, 572
HinP1I GCGC 2 cut(s) 235, 572
HincII GTYRAC 1 cut(s) 1728
HindII GTYRAC 1 cut(s) 1728
HindIII AAGCTT 1 cut(s) 763
HinfI GANTC 9 cut(s) 806, 869, 875, 1141, 1238, 1337, 1418, 1556, 2064
HpaI GTTAAC 1 cut(s) 1728
HpaII CCGG 1 cut(s) 1755
HphI GGTGA 3 cut(s) 470, 1150, 1769
Hpy166II GTNNAC 4 cut(s) 1444, 1582, 1728, 2110
Hpy188III TCNNGA 8 cut(s) 409, 415, 920, 1145, 1429, 1489, 1567, 2099
Hpy8I GTNNAC 4 cut(s) 1444, 1582, 1728, 2110
HpyAV CCTTC 6 cut(s) 438, 593, 607, 917, 1298, 1933
HpyCH4IV ACGT 4 cut(s) 476, 702, 1673, 1791
HpyF10VI GCNNNNNNNGC 6 cut(s) 571, 914, 1259, 1349, 1352, 1719
HpyF3I CTNAG 3 cut(s) 480, 1257, 2100
HpySE526I ACGT 4 cut(s) 476, 702, 1673, 1791
Hsp92I GRCGYC 3 cut(s) 48, 146, 476
HspAI GCGC 2 cut(s) 235, 572
Ksp22I TGATCA 1 cut(s) 946
KspAI GTTAAC 1 cut(s) 1728
Kzo9I GATC 8 cut(s) 411, 435, 460, 734, 896, 946, 1320, 2053
LguI GCTCTTC 1 cut(s) 2067
LmnI GCTCC 6 cut(s) 922, 938, 1150, 1208, 1247, 2097
Lsp1109I GCAGC 7 cut(s) 824, 825, 1237, 1249, 1355, 1361, 1364
LweI GCATC 5 cut(s) 277, 559, 1199, 1262, 1897
MaeI CTAG 5 cut(s) 180, 440, 1115, 1973, 2113
MaeII ACGT 4 cut(s) 476, 702, 1673, 1791
MaeIII GTNAC 1 cut(s) 1168
MalI GATC 8 cut(s) 413, 437, 462, 736, 898, 948, 1322, 2055
MboI GATC 8 cut(s) 411, 435, 460, 734, 896, 946, 1320, 2053
MflI RGATCY 4 cut(s) 411, 435, 734, 1320
MhlI GDGCHC 2 cut(s) 1436, 1574
MlsI TGGCCA 2 cut(s) 98, 243
MluNI TGGCCA 2 cut(s) 98, 243
MlyI GAGTC 3 cut(s) 815, 1412, 1550
MmeI TCCRAC 2 cut(s) 739, 1980
Mox20I TGGCCA 2 cut(s) 98, 243
Mph1103I ATGCAT 1 cut(s) 292
MroXI GAANNNNTTC 3 cut(s) 404, 427, 688
MscI TGGCCA 2 cut(s) 98, 243
MseI TTAA 4 cut(s) 537, 635, 770, 1727
MslI CAYNNNNRTG 1 cut(s) 1755
Msp20I TGGCCA 2 cut(s) 98, 243
MspI CCGG 1 cut(s) 1755
MspR9I CCNGG 1 cut(s) 509
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 6 cut(s) 571, 914, 1259, 1349, 1352, 1719
NcoI CCATGG 2 cut(s) 295, 1315
NdeI CATATG 1 cut(s) 820
NdeII GATC 8 cut(s) 411, 435, 460, 734, 896, 946, 1320, 2053
NlaIV GGNNCC 1 cut(s) 468
NmuCI GTSAC 1 cut(s) 1168
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 3 cut(s) 1450, 1486, 1624
PaqCI CACCTGC 1 cut(s) 1963
PceI AGGCCT 2 cut(s) 362, 1943
PciI ACATGT 2 cut(s) 1482, 1620
PciSI GCTCTTC 1 cut(s) 2067
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 152
PctI GAATGC 1 cut(s) 290
PdmI GAANNNNTTC 3 cut(s) 404, 427, 688
PfeI GAWTC 6 cut(s) 869, 875, 1141, 1238, 1337, 2064
Pfl23II CGTACG 1 cut(s) 1670
PflFI GACNNNGTC 2 cut(s) 503, 701
PfoI TCCNGGA 1 cut(s) 507
PkrI GCNGC 8 cut(s) 815, 839, 1252, 1264, 1345, 1348, 1351, 1354
PleI GAGTC 3 cut(s) 814, 1412, 1550
PpsI GAGTC 3 cut(s) 814, 1412, 1550
PpuMI RGGWCCY 1 cut(s) 379
PscI ACATGT 2 cut(s) 1482, 1620
PshBI ATTAAT 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspLI CGTACG 1 cut(s) 1670
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 3 cut(s) 379, 466, 1587
PspPPI RGGWCCY 1 cut(s) 379
PstI CTGCAG 2 cut(s) 360, 1345
PsuI RGATCY 4 cut(s) 411, 435, 734, 1320
PsyI GACNNNGTC 2 cut(s) 503, 701
RsaI GTAC 1 cut(s) 1672
RsaNI GTAC 1 cut(s) 1671
RseI CAYNNNNRTG 1 cut(s) 1755
SapI GCTCTTC 1 cut(s) 2067
SaqAI TTAA 4 cut(s) 537, 635, 770, 1727
SatI GCNGC 8 cut(s) 814, 838, 1251, 1263, 1344, 1347, 1350, 1353
Sau3AI GATC 8 cut(s) 411, 435, 460, 734, 896, 946, 1320, 2053
Sau96I GGNCC 3 cut(s) 379, 466, 1587
SbfI CCTGCAGG 1 cut(s) 360
SchI GAGTC 3 cut(s) 815, 1412, 1550
ScrFI CCNGG 1 cut(s) 509
SdaI CCTGCAGG 1 cut(s) 360
SduI GDGCHC 2 cut(s) 1436, 1574
SfaNI GCATC 5 cut(s) 277, 559, 1199, 1262, 1897
SfcI CTRYAG 4 cut(s) 356, 1341, 1582, 1644
SinI GGWCC 2 cut(s) 379, 466
SmiMI CAYNNNNRTG 1 cut(s) 1755
Sse8387I CCTGCAGG 1 cut(s) 360
SseBI AGGCCT 2 cut(s) 362, 1943
SsiI CCGC 3 cut(s) 1347, 1460, 1598
SspI AATATT 2 cut(s) 280, 427
SspMI CTAG 5 cut(s) 180, 440, 1115, 1973, 2113
StuI AGGCCT 2 cut(s) 362, 1943
StyD4I CCNGG 1 cut(s) 507
StyI CCWWGG 3 cut(s) 295, 439, 1315
TaiI ACGT 4 cut(s) 479, 705, 1676, 1794
TaqI TCGA 7 cut(s) 248, 285, 416, 1292, 1332, 1397, 1535
TaqII GACCGA 1 cut(s) 1187
TauI GCSGC 1 cut(s) 1349
TfiI GAWTC 6 cut(s) 869, 875, 1141, 1238, 1337, 2064
Tru1I TTAA 4 cut(s) 537, 635, 770, 1727
Tru9I TTAA 4 cut(s) 537, 635, 770, 1727
TscAI CASTG 6 cut(s) 1376, 1383, 1461, 1521, 1599, 1953
TseFI GTSAC 1 cut(s) 1168
TseI GCWGC 7 cut(s) 813, 837, 1250, 1262, 1343, 1349, 1352
Tsp45I GTSAC 1 cut(s) 1168
TspDTI ATGAA 9 cut(s) 95, 331, 387, 681, 882, 918, 1014, 1251, 2085
TspGWI ACGGA 1 cut(s) 1142
TspRI CASTG 6 cut(s) 1376, 1383, 1461, 1521, 1599, 1953
Tth111I GACNNNGTC 2 cut(s) 503, 701
VpaK11BI GGWCC 2 cut(s) 379, 466
VspI ATTAAT 1 cut(s) 635
XagI CCTNNNNNAGG 1 cut(s) 356
XapI RAATTY 4 cut(s) 102, 250, 404, 718
XceI RCATGY 3 cut(s) 1450, 1486, 1624
XmaJI CCTAGG 1 cut(s) 439
XmiI GTMKAC 2 cut(s) 1581, 2109
XmnI GAANNNNTTC 3 cut(s) 404, 427, 688
XspI CTAG 5 cut(s) 180, 440, 1115, 1973, 2113
ZraI GACGTC 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.