Rroxscaffold_5G00349800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000100
Physical Location & Seq
Reverse (-)
23078067 .. 23078527
461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349800.1

Sequence Viewer

Length: 444 bp
ATGGAGGATGTGTTATTGGAAAATGAGGTGCTGAAAATTGAGAAAGCCTCGATGATTGAAAGAGGGAAAATTGGCAGAACGGACGAAGAGAAGGATGACGTGTTAATGGAAAATGAGGTGCTGAAAGTTGAGAGAGCCTCACCGATTAAAAGAGTGAAGCAATTGGAGGGCATAGTGATGGCACTAGCTGAGAACACGTCCGGTGATGACAACTACTCAACTCCTCCTCCACCACCACCTAGTTTCCCTCCACCAAAATCAAAGGCCCCTCGGGACAAGCCAGGCGACAGCAAGCACTCCAAAAACACAAAATCTCAAGCTGAAATTCAGGAAACTCAATCACAACCTGCCTACTCCACATCAAGCGCATCCGAGATGACATCTGCAGAACGACTCTACCAAACCGAGGACATCGGTCACCACTTGAATGCCTTGCCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.28

Weight (kDa)

5.16

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 355
AcsI RAATTY 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 406
AflIII ACRYGT 2 cut(s) 99, 195
AgsI TTSAA 2 cut(s) 59, 427
AjiI CACGTC 2 cut(s) 100, 198
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 2 cut(s) 188, 320
AluI AGCT 2 cut(s) 188, 320
Ama87I CYCGRG 1 cut(s) 270
AoxI GGCC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 324
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 3 cut(s) 132, 215, 410
AvaI CYCGRG 1 cut(s) 270
BccI CCATC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 282
BfaI CTAG 2 cut(s) 185, 240
BfmI CTRYAG 1 cut(s) 384
BfuAI ACCTGC 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 282
BmeT110I CYCGRG 1 cut(s) 270
BmgBI CACGTC 2 cut(s) 100, 198
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 377
BoxI GACNNNNGTC 1 cut(s) 414
BplI GAGNNNNNCTC 4 cut(s) 32, 64, 122, 154
BpuEI CTTGAG 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 269, 405
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 3 cut(s) 26, 211, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 406
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 269, 405
BseGI GGATG 3 cut(s) 13, 100, 368
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMII CTCAG 1 cut(s) 180
BseRI GAGGAG 2 cut(s) 213, 216
BshFI GGCC 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 406
BsmFI GGGAC 1 cut(s) 287
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 270
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 269, 405
Bst2UI CCWGG 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 189
BstEII GGTNACC 1 cut(s) 416
BstF5I GGATG 3 cut(s) 13, 100, 368
BstHHI GCGC 1 cut(s) 368
BstNI CCWGG 1 cut(s) 282
BstPAI GACNNNNGTC 1 cut(s) 414
BstPI GGTNACC 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 384
BsuRI GGCC 1 cut(s) 266
BtrI CACGTC 2 cut(s) 100, 198
BtsCI GGATG 3 cut(s) 13, 100, 368
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 293
CfoI GCGC 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 265
CviJI RGCY 6 cut(s) 47, 137, 188, 266, 280, 320
CviKI_1 RGCY 6 cut(s) 47, 137, 188, 266, 280, 320
DdeI CTNAG 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco88I CYCGRG 1 cut(s) 270
Eco91I GGTNACC 1 cut(s) 416
EcoO109I RGGNCCY 1 cut(s) 265
EcoO65I GGTNACC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 280
FaiI YATR 1 cut(s) 173
FaqI GGGAC 1 cut(s) 287
FokI GGATG 3 cut(s) 20, 107, 355
FspBI CTAG 2 cut(s) 185, 240
GlaI GCGC 1 cut(s) 367
HaeIII GGCC 1 cut(s) 266
HapII CCGG 1 cut(s) 201
HhaI GCGC 1 cut(s) 368
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HinfI GANTC 1 cut(s) 393
HpaII CCGG 1 cut(s) 201
HphI GGTGA 3 cut(s) 132, 215, 410
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 2 cut(s) 272, 329
HpyAV CCTTC 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 99, 197
HpyCH4V TGCA 1 cut(s) 386
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 2 cut(s) 99, 197
HspAI GCGC 1 cut(s) 366
LpnPI CCDG 5 cut(s) 214, 267, 294, 314, 360
LweI GCATC 1 cut(s) 377
MaeI CTAG 2 cut(s) 185, 240
MaeII ACGT 2 cut(s) 99, 197
MaeIII GTNAC 1 cut(s) 416
MboII GAAGA 1 cut(s) 98
MfeI CAATTG 1 cut(s) 161
MluCI AATT 4 cut(s) 36, 69, 161, 324
MlyI GAGTC 1 cut(s) 387
MseI TTAA 2 cut(s) 104, 147
MslI CAYNNNNRTG 2 cut(s) 176, 426
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 282
MunI CAATTG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 1 cut(s) 282
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 416
PctI GAATGC 1 cut(s) 433
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
PshAI GACNNNNGTC 1 cut(s) 414
Psp6I CCWGG 1 cut(s) 280
PspEI GGTNACC 1 cut(s) 416
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 265
PstI CTGCAG 1 cut(s) 388
RseI CAYNNNNRTG 2 cut(s) 176, 426
SaqAI TTAA 2 cut(s) 104, 147
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 1 cut(s) 387
ScrFI CCNGG 1 cut(s) 282
SetI ASST 8 cut(s) 30, 102, 120, 190, 200, 241, 322, 349
SfaNI GCATC 1 cut(s) 377
SfcI CTRYAG 1 cut(s) 384
SmiMI CAYNNNNRTG 2 cut(s) 176, 426
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
Sse9I AATT 4 cut(s) 36, 69, 161, 324
SspMI CTAG 2 cut(s) 185, 240
StyD4I CCNGG 1 cut(s) 280
TaiI ACGT 2 cut(s) 102, 200
TaqI TCGA 1 cut(s) 50
TaqII GACCGA 1 cut(s) 404
TasI AATT 4 cut(s) 36, 69, 161, 324
Tru1I TTAA 2 cut(s) 104, 147
Tru9I TTAA 2 cut(s) 104, 147
TseFI GTSAC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 416
TspGWI ACGGA 1 cut(s) 95
XapI RAATTY 1 cut(s) 324
XspI CTAG 2 cut(s) 185, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.