Rroxscaffold_1G00015780

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000100
Physical Location & Seq
Forward (+)
19655899 .. 19667733
11835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015780.1

Sequence Viewer

Length: 1434 bp
ATGGAAGACAAGTATGGAGCACAAGTTTCAAGACAGGATTTAAAAGACATGATCATGGATGAACCGATAGCAAGCAATTGCATCGAATGTTATGGAATTCTCTTGATCGATCGGTCGTTGGAGAAACAATCACAAGACTTGGATGTCCCAACTTTTATGAATCCCTTATGCTGGCGTGCCGCTGCACAGCGACTGCAGCGTTCCGCTGCACGACAACAAACAAAGTTTAAGGACTTTAGAGCTGCTGCAGAAAACACCCTTTGCAATGCGATAGATGCATTCCATGGAGGTTCAATTAAAGAAAAGGATGCAAAGAAATCAGATGATTTAATCACACTTCTACTACAAGCTTACGACAACGACACGTACCTTTTTGTGTTTGGGAACAGGAAATTCAGAATGTCAACAAGTGATATATCTATGATTTTAGGACTGCCGGGATCCGGGTTATCAATACCAAAGACCAAAGAAGGGGCATACAGATCTGAGTTCGTGACTAAATACTTTGACAAAAAGCAGAGGATCAACAAGGCGGCTGTAGAGGAAGCTTTGAAGAAGGCATGGGCAGAAACTCCAGAAACGGGGGAAGAAAAAACGAAACGGGACGAAATGTTGCCGAGACTGCATGGAATGATAAACGAAGAAAGAATTGGAGACAAATCTTTAGAAAAAGGAAGAAGAGCTAAGAGATGTGGAAATAGAGAAAAAGGGCTTGGAAGAAAAAATAAGGACATTGGAGAAAGAACTGAAACAAGAGAAAAGAAAGCTGACCACATTAACAATGAGAAGATGGAGACAGAGATAGGGAAGACCAATGAAGATAAGAACGAATTACAGAGAAAGCTGGAGGGAAAGGAAGAAGAGATAAGTGCTTTGAAAAAAGAAGTTGAGGAGAAAGAAAAGGAAATTGGCAGAATAAACGAAGAGAATGAGGATGTGTTATTGGAAAATGAGGTGCTGAAAATTGAGAAAGCCTCAATGATTAAAAGAGTGAAAATTGGCAGAACAAACGAAGAGAAGGAGGATGTGTTATTGGAAAATGAGGTGCTGAAAGTTGAGAAAGCCTCACCGATTAAAAGAGTGAAGCAATTGGAGGGCATAGTGATGGCACTAACCGAGAAGTATGAGTCTCCAATAGCACGTCCAGGTGATGACAACTACTCAAGTCCTCCTCCCCCACCACCTAGTTTCCCTCCACCAAAATCAAAGGCCCCTCGGGACAAGCCAACCGACAAAGCAAGCACTCTAAAAACACAAAATCTCAAGCTGGAATTCAGGAAACTCAATCACAACCTCGCCTACTCCACAACGGGCGCATCCGAGATGACATCCGCAGAACCTCACTCTACCAACCGAGGACATCAGTCACCACTTGAATGCCTTGCCCAAGTAGCTGCACAACTTCATTCACCAACAGCTTCGAGGTTAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

477

Amino Acids

54.03

Weight (kDa)

8.27

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AciI CCGC 4 cut(s) 180, 204, 533, 1332
AclWI GGATC 3 cut(s) 435, 448, 530
AcsI RAATTY 3 cut(s) 96, 392, 1271
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 4 cut(s) 171, 443, 471, 581
AflIII ACRYGT 1 cut(s) 363
AgsI TTSAA 5 cut(s) 30, 294, 553, 877, 1376
AjiI CACGTC 1 cut(s) 1142
AjnI CCWGG 1 cut(s) 1144
AjuI GAANNNNNNNTTGG 6 cut(s) 633, 665, 696, 728, 891, 923
AluBI AGCT 9 cut(s) 242, 350, 548, 683, 767, 844, 1267, 1394, 1418
AluI AGCT 9 cut(s) 242, 350, 548, 683, 767, 844, 1267, 1394, 1418
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 4 cut(s) 613, 648, 788, 1134
AlwI GGATC 3 cut(s) 435, 448, 530
AlwNI CAGNNNCTG 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 1215
AoxI GGCC 1 cut(s) 1209
ApeKI GCWGC 6 cut(s) 182, 196, 206, 242, 245, 1394
ApoI RAATTY 3 cut(s) 96, 392, 1271
AspLEI GCGC 1 cut(s) 1316
AspS9I GGNCC 1 cut(s) 1210
AsuC2I CCSGG 2 cut(s) 438, 445
AsuHPI GGTGA 4 cut(s) 1059, 1160, 1359, 1401
AvaI CYCGRG 1 cut(s) 1215
BamHI GGATCC 1 cut(s) 440
BbsI GAAGAC 2 cut(s) 12, 815
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 6 cut(s) 169, 193, 208, 229, 232, 1381
BccI CCATC 2 cut(s) 784, 1099
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BciT130I CCWGG 1 cut(s) 1146
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 2 cut(s) 438, 445
BcoDI GTCTC 4 cut(s) 613, 648, 788, 1134
BfaI CTAG 1 cut(s) 1185
BfmI CTRYAG 3 cut(s) 194, 246, 537
BglII AGATCT 1 cut(s) 482
BisI GCNGC 8 cut(s) 180, 183, 197, 207, 243, 246, 534, 1395
BlsI GCNGC 8 cut(s) 181, 184, 198, 208, 244, 247, 535, 1396
Bme1390I CCNGG 3 cut(s) 438, 445, 1146
BmeT110I CYCGRG 1 cut(s) 1215
BmgBI CACGTC 1 cut(s) 1142
BmgT120I GGNCC 1 cut(s) 1210
BmiI GGNNCC 2 cut(s) 442, 1212
BmrFI CCNGG 3 cut(s) 438, 445, 1146
BmsI GCATC 4 cut(s) 90, 265, 298, 1325
BoxI GACNNNNGTC 1 cut(s) 1363
BpiI GAAGAC 2 cut(s) 12, 815
BplI GAGNNNNNCTC 4 cut(s) 959, 991, 1049, 1081
BpmI CTGGAG 2 cut(s) 558, 866
BpuEI CTTGAG 2 cut(s) 1147, 1247
BpuMI CCSGG 2 cut(s) 438, 445
Bsa29I ATCGAT 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 366
BsaJI CCNNGG 3 cut(s) 283, 1214, 1354
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 1013, 1043
Bsc4I CCNNNNNNNGG 4 cut(s) 171, 443, 471, 581
Bse3DI GCAATG 1 cut(s) 271
BseBI CCWGG 1 cut(s) 1146
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 283, 1214, 1354
BseGI GGATG 7 cut(s) 64, 148, 313, 940, 1030, 1316, 1328
BseLI CCNNNNNNNGG 4 cut(s) 171, 443, 471, 581
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 477
BseRI GAGGAG 2 cut(s) 905, 1161
BseXI GCAGC 6 cut(s) 169, 193, 208, 229, 232, 1381
BsgI GTGCAG 3 cut(s) 168, 192, 1380
Bsh1285I CGRYCG 2 cut(s) 112, 116
BshFI GGCC 1 cut(s) 1211
BshVI ATCGAT 1 cut(s) 108
BsiEI CGRYCG 2 cut(s) 112, 116
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 1215
BsiSI CCGG 2 cut(s) 437, 444
BslFI GGGAC 3 cut(s) 131, 617, 1232
BslI CCNNNNNNNGG 4 cut(s) 171, 443, 471, 581
BsmAI GTCTC 4 cut(s) 613, 648, 788, 1134
BsmFI GGGAC 3 cut(s) 131, 617, 1232
BsmI GAATGC 2 cut(s) 278, 1382
BsnI GGCC 1 cut(s) 1211
BsoBI CYCGRG 1 cut(s) 1215
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 6 cut(s) 51, 105, 109, 440, 482, 522
Bsp19I CCATGG 1 cut(s) 283
BspACI CCGC 4 cut(s) 180, 204, 533, 1332
BspANI GGCC 1 cut(s) 1211
BspCNI CTCAG 1 cut(s) 478
BspDI ATCGAT 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 442, 1212
BspMAI CTGCAG 2 cut(s) 198, 250
BspPI GGATC 3 cut(s) 435, 448, 530
BspQI GCTCTTC 1 cut(s) 673
BsrDI GCAATG 1 cut(s) 271
BssECI CCNNGG 3 cut(s) 283, 1214, 1354
BssMI GATC 6 cut(s) 51, 105, 109, 440, 482, 522
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 1146
Bst6I CTCTTC 4 cut(s) 673, 855, 918, 1008
BstBAI YACGTR 1 cut(s) 366
BstC8I GCNNGC 4 cut(s) 73, 173, 177, 1240
BstDEI CTNAG 2 cut(s) 486, 684
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 7 cut(s) 64, 148, 313, 940, 1030, 1316, 1328
BstHHI GCGC 1 cut(s) 1316
BstKTI GATC 6 cut(s) 54, 108, 112, 443, 485, 525
BstMAI GTCTC 4 cut(s) 613, 648, 788, 1134
BstMBI GATC 6 cut(s) 51, 105, 109, 440, 482, 522
BstMCI CGRYCG 2 cut(s) 112, 116
BstMWI GCNNNNNNNGC 4 cut(s) 196, 275, 622, 1391
BstNI CCWGG 1 cut(s) 1146
BstPAI GACNNNNGTC 1 cut(s) 1363
BstSCI CCNGG 3 cut(s) 436, 443, 1144
BstSFI CTRYAG 3 cut(s) 194, 246, 537
BstV1I GCAGC 6 cut(s) 169, 193, 208, 229, 232, 1381
BstV2I GAAGAC 2 cut(s) 12, 815
BstX2I RGATCY 2 cut(s) 440, 482
BstYI RGATCY 2 cut(s) 440, 482
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 1 cut(s) 1211
BsuTUI ATCGAT 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 283
BtrI CACGTC 1 cut(s) 1142
BtsCI GGATG 7 cut(s) 64, 148, 313, 940, 1030, 1316, 1328
Cac8I GCNNGC 4 cut(s) 73, 173, 177, 1240
CaiI CAGNNNCTG 1 cut(s) 193
CfoI GCGC 1 cut(s) 1316
Cfr13I GGNCC 1 cut(s) 1210
ClaI ATCGAT 1 cut(s) 108
Csp6I GTAC 1 cut(s) 367
CviAII CATG 5 cut(s) 49, 55, 284, 561, 626
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 486, 684
DpnI GATC 6 cut(s) 53, 107, 111, 442, 484, 524
DpnII GATC 6 cut(s) 51, 105, 109, 440, 482, 522
DraI TTTAAA 1 cut(s) 42
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
Eam1104I CTCTTC 4 cut(s) 673, 855, 918, 1008
EarI CTCTTC 4 cut(s) 673, 855, 918, 1008
Eco130I CCWWGG 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 1215
EcoO109I RGGNCCY 1 cut(s) 1210
EcoRI GAATTC 2 cut(s) 96, 1271
EcoRII CCWGG 1 cut(s) 1144
EcoT14I CCWWGG 1 cut(s) 283
EcoT22I ATGCAT 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 5 cut(s) 52, 58, 287, 564, 629
FaqI GGGAC 3 cut(s) 131, 617, 1232
FatI CATG 5 cut(s) 48, 54, 283, 560, 625
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 8 cut(s) 180, 183, 197, 207, 243, 246, 534, 1395
FokI GGATG 7 cut(s) 71, 155, 320, 947, 1037, 1303, 1315
Fsp4HI GCNGC 8 cut(s) 180, 183, 197, 207, 243, 246, 534, 1395
FspBI CTAG 1 cut(s) 1185
GlaI GCGC 1 cut(s) 1315
GluI GCNGC 8 cut(s) 180, 183, 197, 207, 243, 246, 534, 1395
GsuI CTGGAG 2 cut(s) 558, 866
HaeIII GGCC 1 cut(s) 1211
HapII CCGG 2 cut(s) 437, 444
HhaI GCGC 1 cut(s) 1316
Hin1II CATG 5 cut(s) 52, 58, 287, 564, 629
Hin6I GCGC 1 cut(s) 1314
HinP1I GCGC 1 cut(s) 1314
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HindIII AAGCTT 2 cut(s) 348, 546
HinfI GANTC 2 cut(s) 160, 1127
HpaII CCGG 2 cut(s) 437, 444
HphI GGTGA 4 cut(s) 1059, 1160, 1359, 1401
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 4 cut(s) 322, 398, 487, 1321
Hpy188III TCNNGA 6 cut(s) 30, 103, 493, 575, 1217, 1276
Hpy8I GTNNAC 1 cut(s) 405
HpyAV CCTTC 3 cut(s) 464, 550, 1012
HpyCH4IV ACGT 2 cut(s) 365, 1141
HpyF10VI GCNNNNNNNGC 4 cut(s) 196, 275, 622, 1391
HpyF3I CTNAG 2 cut(s) 486, 684
HpySE526I ACGT 2 cut(s) 365, 1141
Hsp92II CATG 5 cut(s) 52, 58, 287, 564, 629
HspAI GCGC 1 cut(s) 1314
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 6 cut(s) 51, 105, 109, 440, 482, 522
LguI GCTCTTC 1 cut(s) 673
LmnI GCTCC 1 cut(s) 17
Lsp1109I GCAGC 6 cut(s) 169, 193, 208, 229, 232, 1381
LweI GCATC 4 cut(s) 90, 265, 298, 1325
MaeI CTAG 1 cut(s) 1185
MaeII ACGT 2 cut(s) 365, 1141
MaeIII GTNAC 2 cut(s) 493, 1365
MalI GATC 6 cut(s) 53, 107, 111, 442, 484, 524
MboI GATC 6 cut(s) 51, 105, 109, 440, 482, 522
MfeI CAATTG 2 cut(s) 76, 1088
MflI RGATCY 2 cut(s) 440, 482
MhlI GDGCHC 1 cut(s) 22
MlyI GAGTC 1 cut(s) 1136
MmeI TCCRAC 1 cut(s) 99
Mph1103I ATGCAT 1 cut(s) 280
MseI TTAA 8 cut(s) 41, 228, 297, 329, 777, 984, 1074, 1427
MslI CAYNNNNRTG 3 cut(s) 53, 1103, 1375
MspA1I CMGCKG 2 cut(s) 182, 206
MspI CCGG 2 cut(s) 437, 444
MspR9I CCNGG 3 cut(s) 438, 445, 1146
MunI CAATTG 2 cut(s) 76, 1088
Mva1269I GAATGC 2 cut(s) 278, 1382
MvaI CCWGG 1 cut(s) 1146
MwoI GCNNNNNNNGC 4 cut(s) 196, 275, 622, 1391
NciI CCSGG 2 cut(s) 438, 445
NcoI CCATGG 1 cut(s) 283
NdeII GATC 6 cut(s) 51, 105, 109, 440, 482, 522
NlaIII CATG 5 cut(s) 52, 58, 287, 564, 629
NlaIV GGNNCC 2 cut(s) 442, 1212
NmeAIII GCCGAG 1 cut(s) 642
NmuCI GTSAC 2 cut(s) 493, 1365
NsiI ATGCAT 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 673
PctI GAATGC 2 cut(s) 278, 1382
PfeI GAWTC 1 cut(s) 160
PkrI GCNGC 8 cut(s) 181, 184, 198, 208, 244, 247, 535, 1396
Ple19I CGATCG 1 cut(s) 112
PleI GAGTC 1 cut(s) 1135
PpsI GAGTC 1 cut(s) 1135
Ppu21I YACGTR 1 cut(s) 366
PshAI GACNNNNGTC 1 cut(s) 1363
Psp6I CCWGG 1 cut(s) 1144
PspGI CCWGG 1 cut(s) 1144
PspN4I GGNNCC 2 cut(s) 442, 1212
PspPI GGNCC 1 cut(s) 1210
PstI CTGCAG 2 cut(s) 198, 250
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 2 cut(s) 440, 482
PvuI CGATCG 1 cut(s) 112
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 3 cut(s) 53, 1103, 1375
SapI GCTCTTC 1 cut(s) 673
SaqAI TTAA 8 cut(s) 41, 228, 297, 329, 777, 984, 1074, 1427
SatI GCNGC 8 cut(s) 180, 183, 197, 207, 243, 246, 534, 1395
Sau3AI GATC 6 cut(s) 51, 105, 109, 440, 482, 522
Sau96I GGNCC 1 cut(s) 1210
SchI GAGTC 1 cut(s) 1136
ScrFI CCNGG 3 cut(s) 438, 445, 1146
SduI GDGCHC 1 cut(s) 22
SfaNI GCATC 4 cut(s) 90, 265, 298, 1325
SfcI CTRYAG 3 cut(s) 194, 246, 537
SmiMI CAYNNNNRTG 3 cut(s) 53, 1103, 1375
SmlI CTYRAG 2 cut(s) 1162, 1262
SmoI CTYRAG 2 cut(s) 1162, 1262
SsiI CCGC 4 cut(s) 180, 204, 533, 1332
SspMI CTAG 1 cut(s) 1185
StyD4I CCNGG 3 cut(s) 436, 443, 1144
StyI CCWWGG 1 cut(s) 283
TaiI ACGT 2 cut(s) 368, 1144
TaqI TCGA 3 cut(s) 84, 108, 1421
TaqII GACCGA 1 cut(s) 102
TauI GCSGC 2 cut(s) 182, 536
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 8 cut(s) 41, 228, 297, 329, 777, 984, 1074, 1427
Tru9I TTAA 8 cut(s) 41, 228, 297, 329, 777, 984, 1074, 1427
TseFI GTSAC 2 cut(s) 493, 1365
TseI GCWGC 6 cut(s) 182, 196, 206, 242, 245, 1394
Tsp45I GTSAC 2 cut(s) 493, 1365
TspDTI ATGAA 4 cut(s) 75, 173, 831, 1394
XapI RAATTY 3 cut(s) 96, 392, 1271
XspI CTAG 1 cut(s) 1185
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.