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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 991 |
| AccI | GTMKAC | 2 cut(s) | 996, 1017 |
| AclWI | GGATC | 1 cut(s) | 350 |
| AcsI | RAATTY | 1 cut(s) | 118 |
| AfaI | GTAC | 1 cut(s) | 559 |
| AgsI | TTSAA | 6 cut(s) | 25, 163, 539, 551, 779, 790 |
| AjnI | CCWGG | 1 cut(s) | 1032 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 434, 466 |
| AluBI | AGCT | 7 cut(s) | 34, 212, 225, 272, 503, 859, 979 |
| AluI | AGCT | 7 cut(s) | 34, 212, 225, 272, 503, 859, 979 |
| Alw26I | GTCTC | 1 cut(s) | 671 |
| AlwI | GGATC | 1 cut(s) | 350 |
| ApeKI | GCWGC | 5 cut(s) | 209, 272, 284, 371, 935 |
| ApoI | RAATTY | 1 cut(s) | 118 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 546 |
| AspLEI | GCGC | 1 cut(s) | 935 |
| AspS9I | GGNCC | 1 cut(s) | 1030 |
| AsuHPI | GGTGA | 3 cut(s) | 91, 151, 656 |
| AvaII | GGWCC | 1 cut(s) | 1030 |
| BanII | GRGCYC | 2 cut(s) | 188, 461 |
| BbsI | GAAGAC | 1 cut(s) | 590 |
| BbvCI | CCTCAGC | 1 cut(s) | 987 |
| BbvI | GCAGC | 5 cut(s) | 221, 259, 271, 383, 922 |
| BccI | CCATC | 2 cut(s) | 439, 922 |
| BciT130I | CCWGG | 1 cut(s) | 1034 |
| BcoDI | GTCTC | 1 cut(s) | 671 |
| BfaI | CTAG | 3 cut(s) | 590, 839, 860 |
| BfmI | CTRYAG | 4 cut(s) | 6, 363, 531, 936 |
| BfoI | RGCGCY | 1 cut(s) | 936 |
| BfuAI | ACCTGC | 1 cut(s) | 991 |
| BisI | GCNGC | 5 cut(s) | 210, 273, 285, 372, 936 |
| BlsI | GCNGC | 5 cut(s) | 211, 274, 286, 373, 937 |
| Bme1390I | CCNGG | 1 cut(s) | 1034 |
| Bme18I | GGWCC | 1 cut(s) | 1030 |
| BmgT120I | GGNCC | 1 cut(s) | 1030 |
| BmrFI | CCNGG | 1 cut(s) | 1034 |
| BmrI | ACTGGG | 1 cut(s) | 1009 |
| BmsI | GCATC | 4 cut(s) | 140, 284, 784, 832 |
| BmuI | ACTGGG | 1 cut(s) | 1009 |
| BpiI | GAAGAC | 1 cut(s) | 590 |
| Bpu10I | CCTNAGC | 1 cut(s) | 987 |
| BsaI | GGTCTC | 1 cut(s) | 671 |
| BsaJI | CCNNGG | 1 cut(s) | 337 |
| BsaWI | WCCGGW | 2 cut(s) | 641, 898 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 434, 464 |
| Bse1I | ACTGG | 2 cut(s) | 734, 1004 |
| BseBI | CCWGG | 1 cut(s) | 1034 |
| BseDI | CCNNGG | 1 cut(s) | 337 |
| BseGI | GGATG | 1 cut(s) | 910 |
| BseMII | CTCAG | 1 cut(s) | 978 |
| BseNI | ACTGG | 2 cut(s) | 734, 1004 |
| BseRI | GAGGAG | 1 cut(s) | 1019 |
| BseXI | GCAGC | 5 cut(s) | 221, 259, 271, 383, 922 |
| BsgI | GTGCAG | 2 cut(s) | 331, 382 |
| BsiSI | CCGG | 2 cut(s) | 642, 899 |
| BsiWI | CGTACG | 1 cut(s) | 557 |
| BslFI | GGGAC | 1 cut(s) | 319 |
| BsmAI | GTCTC | 1 cut(s) | 671 |
| BsmFI | GGGAC | 1 cut(s) | 319 |
| Bso31I | GGTCTC | 1 cut(s) | 671 |
| Bsp1286I | GDGCHC | 2 cut(s) | 188, 461 |
| Bsp143I | GATC | 2 cut(s) | 307, 342 |
| Bsp19I | CCATGG | 1 cut(s) | 337 |
| BspCNI | CTCAG | 1 cut(s) | 979 |
| BspMAI | CTGCAG | 2 cut(s) | 10, 940 |
| BspMI | ACCTGC | 1 cut(s) | 991 |
| BspPI | GGATC | 1 cut(s) | 350 |
| BspTNI | GGTCTC | 1 cut(s) | 671 |
| BsrI | ACTGG | 2 cut(s) | 734, 1004 |
| BssECI | CCNNGG | 1 cut(s) | 337 |
| BssMI | GATC | 2 cut(s) | 307, 342 |
| BssNAI | GTATAC | 1 cut(s) | 1018 |
| BssT1I | CCWWGG | 1 cut(s) | 337 |
| Bst1107I | GTATAC | 1 cut(s) | 1018 |
| Bst2UI | CCWGG | 1 cut(s) | 1034 |
| Bst4CI | ACNGT | 5 cut(s) | 319, 352, 450, 466, 652 |
| Bst6I | CTCTTC | 2 cut(s) | 774, 963 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 944 |
| BstDEI | CTNAG | 2 cut(s) | 279, 987 |
| BstDSI | CCRYGG | 1 cut(s) | 337 |
| BstF5I | GGATG | 1 cut(s) | 910 |
| BstH2I | RGCGCY | 1 cut(s) | 936 |
| BstHHI | GCGC | 1 cut(s) | 935 |
| BstKTI | GATC | 2 cut(s) | 310, 345 |
| BstMAI | GTCTC | 1 cut(s) | 671 |
| BstMBI | GATC | 2 cut(s) | 307, 342 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 281, 944 |
| BstNI | CCWGG | 1 cut(s) | 1034 |
| BstSCI | CCNGG | 1 cut(s) | 1032 |
| BstSFI | CTRYAG | 4 cut(s) | 6, 363, 531, 936 |
| BstV1I | GCAGC | 5 cut(s) | 221, 259, 271, 383, 922 |
| BstV2I | GAAGAC | 1 cut(s) | 590 |
| BstX2I | RGATCY | 1 cut(s) | 342 |
| BstYI | RGATCY | 1 cut(s) | 342 |
| BstZ17I | GTATAC | 1 cut(s) | 1018 |
| BtgI | CCRYGG | 1 cut(s) | 337 |
| BtsCI | GGATG | 1 cut(s) | 910 |
| BtsI | GCAGTG | 2 cut(s) | 394, 833 |
| BtsIMutI | CAGTG | 2 cut(s) | 394, 833 |
| BveI | ACCTGC | 1 cut(s) | 991 |
| CfoI | GCGC | 1 cut(s) | 935 |
| Cfr13I | GGNCC | 1 cut(s) | 1030 |
| Csp6I | GTAC | 1 cut(s) | 558 |
| CviAII | CATG | 3 cut(s) | 76, 338, 823 |
| CviQI | GTAC | 1 cut(s) | 558 |
| DdeI | CTNAG | 2 cut(s) | 279, 987 |
| DpnI | GATC | 2 cut(s) | 309, 344 |
| DpnII | GATC | 2 cut(s) | 307, 342 |
| Eam1104I | CTCTTC | 2 cut(s) | 774, 963 |
| EarI | CTCTTC | 2 cut(s) | 774, 963 |
| Eco130I | CCWWGG | 1 cut(s) | 337 |
| Eco24I | GRGCYC | 2 cut(s) | 188, 461 |
| Eco31I | GGTCTC | 1 cut(s) | 671 |
| Eco47I | GGWCC | 1 cut(s) | 1030 |
| EcoRII | CCWGG | 1 cut(s) | 1032 |
| EcoT14I | CCWWGG | 1 cut(s) | 337 |
| EcoT38I | GRGCYC | 2 cut(s) | 188, 461 |
| ErhI | CCWWGG | 1 cut(s) | 337 |
| FaeI | CATG | 3 cut(s) | 79, 341, 826 |
| FaqI | GGGAC | 1 cut(s) | 319 |
| FatI | CATG | 3 cut(s) | 75, 337, 822 |
| FauNDI | CATATG | 1 cut(s) | 867 |
| FblI | GTMKAC | 2 cut(s) | 996, 1017 |
| Fnu4HI | GCNGC | 5 cut(s) | 210, 273, 285, 372, 936 |
| FokI | GGATG | 1 cut(s) | 917 |
| FriOI | GRGCYC | 2 cut(s) | 188, 461 |
| Fsp4HI | GCNGC | 5 cut(s) | 210, 273, 285, 372, 936 |
| FspBI | CTAG | 3 cut(s) | 590, 839, 860 |
| GlaI | GCGC | 1 cut(s) | 934 |
| GluI | GCNGC | 5 cut(s) | 210, 273, 285, 372, 936 |
| HaeII | RGCGCY | 1 cut(s) | 936 |
| HapII | CCGG | 2 cut(s) | 642, 899 |
| HhaI | GCGC | 1 cut(s) | 935 |
| Hin1II | CATG | 3 cut(s) | 79, 341, 826 |
| Hin6I | GCGC | 1 cut(s) | 933 |
| HinP1I | GCGC | 1 cut(s) | 933 |
| HincII | GTYRAC | 1 cut(s) | 615 |
| HindII | GTYRAC | 1 cut(s) | 615 |
| HinfI | GANTC | 6 cut(s) | 82, 193, 359, 443, 638, 1050 |
| HpaI | GTTAAC | 1 cut(s) | 615 |
| HpaII | CCGG | 2 cut(s) | 642, 899 |
| HphI | GGTGA | 3 cut(s) | 91, 151, 656 |
| Hpy166II | GTNNAC | 4 cut(s) | 469, 615, 997, 1018 |
| Hpy188I | TCNGA | 1 cut(s) | 516 |
| Hpy188III | TCNNGA | 2 cut(s) | 454, 911 |
| Hpy8I | GTNNAC | 4 cut(s) | 469, 615, 997, 1018 |
| HpyAV | CCTTC | 5 cut(s) | 136, 157, 242, 320, 820 |
| HpyCH4III | ACNGT | 5 cut(s) | 319, 352, 450, 466, 652 |
| HpyCH4IV | ACGT | 2 cut(s) | 560, 678 |
| HpyCH4V | TGCA | 8 cut(s) | 8, 131, 275, 348, 399, 622, 938, 947 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 281, 944 |
| HpyF3I | CTNAG | 2 cut(s) | 279, 987 |
| HpySE526I | ACGT | 2 cut(s) | 560, 678 |
| Hsp92II | CATG | 3 cut(s) | 79, 341, 826 |
| HspAI | GCGC | 1 cut(s) | 933 |
| KspAI | GTTAAC | 1 cut(s) | 615 |
| Kzo9I | GATC | 2 cut(s) | 307, 342 |
| LmnI | GCTCC | 2 cut(s) | 230, 269 |
| Lsp1109I | GCAGC | 5 cut(s) | 221, 259, 271, 383, 922 |
| LweI | GCATC | 4 cut(s) | 140, 284, 784, 832 |
| MaeI | CTAG | 3 cut(s) | 590, 839, 860 |
| MaeII | ACGT | 2 cut(s) | 560, 678 |
| MaeIII | GTNAC | 1 cut(s) | 444 |
| MalI | GATC | 2 cut(s) | 309, 344 |
| MboI | GATC | 2 cut(s) | 307, 342 |
| MboII | GAAGA | 8 cut(s) | 37, 368, 422, 551, 595, 772, 791, 980 |
| MflI | RGATCY | 1 cut(s) | 342 |
| MhlI | GDGCHC | 2 cut(s) | 188, 461 |
| MluCI | AATT | 7 cut(s) | 19, 53, 118, 158, 167, 260, 1021 |
| MlyI | GAGTC | 2 cut(s) | 187, 452 |
| MmeI | TCCRAC | 1 cut(s) | 867 |
| MroXI | GAANNNNTTC | 1 cut(s) | 546 |
| MseI | TTAA | 5 cut(s) | 56, 263, 614, 689, 852 |
| MspI | CCGG | 2 cut(s) | 642, 899 |
| MspR9I | CCNGG | 1 cut(s) | 1034 |
| MvaI | CCWGG | 1 cut(s) | 1034 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 281, 944 |
| NcoI | CCATGG | 1 cut(s) | 337 |
| NdeI | CATATG | 1 cut(s) | 867 |
| NdeII | GATC | 2 cut(s) | 307, 342 |
| NlaIII | CATG | 3 cut(s) | 79, 341, 826 |
| NmuCI | GTSAC | 1 cut(s) | 444 |
| PdmI | GAANNNNTTC | 1 cut(s) | 546 |
| PfeI | GAWTC | 3 cut(s) | 82, 359, 638 |
| Pfl23II | CGTACG | 1 cut(s) | 557 |
| PkrI | GCNGC | 5 cut(s) | 211, 274, 286, 373, 937 |
| PleI | GAGTC | 2 cut(s) | 187, 451 |
| PpsI | GAGTC | 2 cut(s) | 187, 451 |
| Psp6I | CCWGG | 1 cut(s) | 1032 |
| PspGI | CCWGG | 1 cut(s) | 1032 |
| PspLI | CGTACG | 1 cut(s) | 557 |
| PspPI | GGNCC | 1 cut(s) | 1030 |
| PstI | CTGCAG | 2 cut(s) | 10, 940 |
| PsuI | RGATCY | 1 cut(s) | 342 |
| RsaI | GTAC | 1 cut(s) | 559 |
| RsaNI | GTAC | 1 cut(s) | 558 |
| SaqAI | TTAA | 5 cut(s) | 56, 263, 614, 689, 852 |
| SatI | GCNGC | 5 cut(s) | 210, 273, 285, 372, 936 |
| Sau3AI | GATC | 2 cut(s) | 307, 342 |
| Sau96I | GGNCC | 1 cut(s) | 1030 |
| SchI | GAGTC | 2 cut(s) | 187, 452 |
| ScrFI | CCNGG | 1 cut(s) | 1034 |
| SduI | GDGCHC | 2 cut(s) | 188, 461 |
| SfaNI | GCATC | 4 cut(s) | 140, 284, 784, 832 |
| SfcI | CTRYAG | 4 cut(s) | 6, 363, 531, 936 |
| SinI | GGWCC | 1 cut(s) | 1030 |
| Sse9I | AATT | 7 cut(s) | 19, 53, 118, 158, 167, 260, 1021 |
| SspMI | CTAG | 3 cut(s) | 590, 839, 860 |
| StyD4I | CCNGG | 1 cut(s) | 1032 |
| StyI | CCWWGG | 1 cut(s) | 337 |
| TaaI | ACNGT | 5 cut(s) | 319, 352, 450, 466, 652 |
| TaiI | ACGT | 2 cut(s) | 563, 681 |
| TaqI | TCGA | 3 cut(s) | 314, 354, 422 |
| TasI | AATT | 7 cut(s) | 19, 53, 118, 158, 167, 260, 1021 |
| TfiI | GAWTC | 3 cut(s) | 82, 359, 638 |
| Tru1I | TTAA | 5 cut(s) | 56, 263, 614, 689, 852 |
| Tru9I | TTAA | 5 cut(s) | 56, 263, 614, 689, 852 |
| TscAI | CASTG | 2 cut(s) | 401, 840 |
| TseFI | GTSAC | 1 cut(s) | 444 |
| TseI | GCWGC | 5 cut(s) | 209, 272, 284, 371, 935 |
| Tsp45I | GTSAC | 1 cut(s) | 444 |
| TspDTI | ATGAA | 3 cut(s) | 125, 273, 839 |
| TspRI | CASTG | 2 cut(s) | 401, 840 |
| VpaK11BI | GGWCC | 1 cut(s) | 1030 |
| XapI | RAATTY | 1 cut(s) | 118 |
| XmiI | GTMKAC | 2 cut(s) | 996, 1017 |
| XmnI | GAANNNNTTC | 1 cut(s) | 546 |
| XspI | CTAG | 3 cut(s) | 590, 839, 860 |