Rroxscaffold_3G00231580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000100
Physical Location & Seq
Forward (+)
16840422 .. 16842218
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231580.1

Sequence Viewer

Length: 465 bp
ATGAAACGGGACAGAAATGTTGCTGTATTAGTACTCTTGAACCTTTTCATCAAACTCCTGTTCCCAAACTCTGGAGGAACAATATCTTGGGATTATATAAGAGTCGTGAAGAGGTGGAAAGTCCGGGAAAATATAGCTGGGCAAAGGAAGTTGGCGACTTCCTTAAAAAATCAATTAAACGAAAGGGAAAAGATTCACAAAACATGGCAGGTTGCCACGTCCGGTGATGACAACTACTCAACTCCTCCTCCACCACCACCTAGTTTCCCTCCACCAAAATCAAAGGCCCCTCGGGACAAGCCAACCGACAAGCAAGCACTCCAAAAACACAAAATCTCAAGCCGGAATTCAGAAACTCAATCACAACCCGCCTACTCCTCGGCAAGCGCATACGAGATGACATCTCAGAACACGACTCTACCAACCGAGGACATCGGTCACTACTTGAATGCCTTGCCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.41

Weight (kDa)

9.99

Isoelectric Point (pI)

54.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 71
AciI CCGC 1 cut(s) 369
AcsI RAATTY 1 cut(s) 346
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 2 cut(s) 40, 448
AjiI CACGTC 1 cut(s) 219
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 291
AoxI GGCC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 346
Asp700I GAANNNNTTC 2 cut(s) 44, 192
AspLEI GCGC 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 286
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 236
AvaI CYCGRG 1 cut(s) 291
BcnI CCSGG 1 cut(s) 125
BfaI CTAG 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 199
BmcAI AGTACT 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 291
BmgBI CACGTC 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 125
BoxI GACNNNNGTC 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 322
BpuMI CCSGG 1 cut(s) 125
BsaJI CCNNGG 3 cut(s) 290, 378, 426
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 71
BseDI CCNNGG 3 cut(s) 290, 378, 426
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 419
BseRI GAGGAG 3 cut(s) 234, 237, 367
BseYI CCCAGC 1 cut(s) 137
BshFI GGCC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 3 cut(s) 124, 222, 343
BslFI GGGAC 2 cut(s) 23, 308
BslI CCNNNNNNNGG 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 23, 308
BsmI GAATGC 1 cut(s) 454
BsnI GGCC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 291
BspACI CCGC 1 cut(s) 369
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 199
BssECI CCNNGG 3 cut(s) 290, 378, 426
Bst6I CTCTTC 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 315, 385
BstDEI CTNAG 1 cut(s) 405
BstHHI GCGC 1 cut(s) 389
BstPAI GACNNNNGTC 1 cut(s) 435
BstSCI CCNGG 1 cut(s) 123
BsuRI GGCC 1 cut(s) 287
BtrI CACGTC 1 cut(s) 219
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 2 cut(s) 315, 385
CfoI GCGC 1 cut(s) 389
Cfr13I GGNCC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 32
CviAII CATG 1 cut(s) 204
CviJI RGCY 4 cut(s) 137, 287, 301, 342
CviKI_1 RGCY 4 cut(s) 137, 287, 301, 342
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 286
EcoRI GAATTC 1 cut(s) 346
FaeI CATG 1 cut(s) 207
FaiI YATR 5 cut(s) 96, 98, 134, 205, 391
FaqI GGGAC 2 cut(s) 23, 308
FatI CATG 1 cut(s) 203
FauI CCCGC 1 cut(s) 376
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 388
GsaI CCCAGC 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 287
HapII CCGG 3 cut(s) 124, 222, 343
HhaI GCGC 1 cut(s) 389
Hin1II CATG 1 cut(s) 207
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HinfI GANTC 3 cut(s) 102, 193, 415
HpaII CCGG 3 cut(s) 124, 222, 343
HphI GGTGA 1 cut(s) 236
Hpy188I TCNGA 2 cut(s) 352, 408
Hpy188III TCNNGA 4 cut(s) 37, 72, 106, 293
HpyCH4IV ACGT 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 1 cut(s) 207
HspAI GCGC 1 cut(s) 387
LpnPI CCDG 7 cut(s) 57, 71, 123, 137, 194, 235, 356
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 437
MboII GAAGA 1 cut(s) 121
MluCI AATT 2 cut(s) 173, 346
MlyI GAGTC 2 cut(s) 111, 409
MnlI CCTC 8 cut(s) 68, 105, 255, 258, 279, 300, 388, 421
MroXI GAANNNNTTC 2 cut(s) 44, 192
MseI TTAA 2 cut(s) 164, 176
MspI CCGG 3 cut(s) 124, 222, 343
MspR9I CCNGG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 454
NciI CCSGG 1 cut(s) 125
NlaIII CATG 1 cut(s) 207
NlaIV GGNNCC 1 cut(s) 288
NmeAIII GCCGAG 1 cut(s) 359
NmuCI GTSAC 1 cut(s) 437
PctI GAATGC 1 cut(s) 454
PdmI GAANNNNTTC 2 cut(s) 44, 192
PfeI GAWTC 1 cut(s) 193
PflMI CCANNNNNTGG 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 123
PleI GAGTC 2 cut(s) 110, 409
PpsI GAGTC 2 cut(s) 110, 409
PshAI GACNNNNGTC 1 cut(s) 435
PspFI CCCAGC 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 1 cut(s) 286
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 164, 176
Sau96I GGNCC 1 cut(s) 286
ScaI AGTACT 1 cut(s) 33
SchI GAGTC 2 cut(s) 111, 409
ScrFI CCNGG 1 cut(s) 125
SetI ASST 6 cut(s) 45, 116, 139, 213, 221, 262
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
Sse9I AATT 2 cut(s) 173, 346
SsiI CCGC 1 cut(s) 369
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 123
TaiI ACGT 1 cut(s) 221
TaqII GACCGA 1 cut(s) 425
TasI AATT 2 cut(s) 173, 346
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 2 cut(s) 164, 176
Tru9I TTAA 2 cut(s) 164, 176
TseFI GTSAC 1 cut(s) 437
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 2 cut(s) 17, 37
Van91I CCANNNNNTGG 1 cut(s) 71
XapI RAATTY 1 cut(s) 346
XmnI GAANNNNTTC 2 cut(s) 44, 192
XspI CTAG 1 cut(s) 261
ZrmI AGTACT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.