Rmu_sc0001214.1_g000032

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001214.1
OG0000100
Physical Location & Seq
Reverse (-)
122004 .. 130257
8254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001214.1_g000032.1.cds

Sequence Viewer

Length: 1653 bp
atgtcggagatcggagaaccgatcgggtccgaaaacacccatttgtgtcgccttctacagccaccaccaccgagaatcggtgctagaggacgccacagggtcgaccagaaggaggagacgatcctatctggaaattttcgtcgccggagaccgccgcagttcgccggaatagccgggggtgaaatgatccttggcaaaaaccgaaccttcgacatcagtttggtggcccgagactgccggaatcgccggaaatcgatgaaaatcccgatctgctacagtaaacttcacagctcaaaatcgaactcctccggtcgaatcactgcaaaacaccaccacatacatgacaaggatgaagaggcgagcctgctggtgcccggattcagtcatgggtcggccggagaaggaagaataggactgaagaggagaaaagatcggggaagaagagagagaaaactgggctttagactttacttgaatggaaattctgctactgcaaatacctattttataggctcagataatgaaactgataacaagcagaatctcagtgcaagaacattagatttgctcaggcagtcaccatttggaaatattgtcgatgcattccatggtggctacatagaggagaagtcagccaagaaatctgatgatttcattacactcctcctacaggcctacgaccatgaaaatgacctcttcttttttgcaaaaaagaaattcaggatctcgacaagagatatttcaaagatcctaggaatgccagaaaaaggtgagttggtctcaaagacttctgagggggcatatcagtccgactttatccagcaatttttttcaaacacagcgagaattaacaagaaagccgtggagaaagctctgcaagatgcgctcaaagagaatgcaacaacagaagaagggattgagaagaaggacaaaaatgtggcaagattaatcttgctggacttgttcatcaagtttctgttcccaaatgcaggaggaacaatttcatgggactacgtaaaagcctgcgaaaatttggattttttttttttgtgcaagcagtattggttctgccaaaagactggaaaaatcaagccaatatctggaagggagaacgaagatcatggaatgagaaaatgggacatccagaaactgataaagaattggccaagttttaacagcttgaaaaaaatagagaaaatctttgaaagcctgaaggaggatagagaggaatcagaatcagaggaagaggagaatagatcagatgaagcaaagacagttccggaaggagaggaaaaaggagctgatgatcagaattgtgaaaacgaagaagataacctagaagttgaggtggctgaacaggaaacagcttcaggaaaaaacaaatgggagaaagagcttcagaaaaaggaggaggagataagatatatgactgcagagaaagataatttgaagaaaaagctgaatgaaaaggaagaggaactaagtaaaatcacagaggacatggtgaatctggaggaaagaaatgctacacttgtgaccgggaatttctgccttgcatcgtcggtgaaggagttagagataaaattgaaggaatgggagaaaatgttgagcccaaagactcacacctcaacagcagctcaccccacctcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

550

Amino Acids

62.97

Weight (kDa)

7.59

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 370
AccB7I CCANNNNNTGG 1 cut(s) 1100
AccI GTMKAC 1 cut(s) 102
AccIII TCCGGA 1 cut(s) 1279
AciI CCGC 2 cut(s) 152, 155
AclWI GGATC 4 cut(s) 115, 181, 731, 742
AcoI YGGCCR 2 cut(s) 393, 1163
AcsI RAATTY 5 cut(s) 133, 481, 716, 1030, 1543
AcuI CTGAAG 4 cut(s) 437, 1232, 1353, 1382
AcyI GRCGYC 1 cut(s) 91
AfiI CCNNNNNNNGG 7 cut(s) 77, 112, 670, 767, 989, 1100, 1216
AgsI TTSAA 7 cut(s) 475, 744, 834, 1183, 1205, 1450, 1588
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 8 cut(s) 291, 872, 1179, 1301, 1367, 1396, 1459, 1637
AluI AGCT 8 cut(s) 291, 872, 1179, 1301, 1367, 1396, 1459, 1637
Alw26I GTCTC 4 cut(s) 110, 142, 225, 784
AlwI GGATC 4 cut(s) 115, 181, 731, 742
AlwNI CAGNNNCTG 1 cut(s) 1150
Ama87I CYCGRG 1 cut(s) 228
Aor13HI TCCGGA 1 cut(s) 1279
AoxI GGCC 4 cut(s) 225, 393, 672, 1163
ApeKI GCWGC 1 cut(s) 1634
ApoI RAATTY 5 cut(s) 133, 481, 716, 1030, 1543
AseI ATTAAT 1 cut(s) 947
Asp700I GAANNNNTTC 1 cut(s) 1000
AspA2I CCTAGG 1 cut(s) 751
AspLEI GCGC 1 cut(s) 886
AspS9I GGNCC 2 cut(s) 27, 226
AsuC2I CCSGG 3 cut(s) 175, 375, 1540
AsuHPI GGTGA 6 cut(s) 191, 570, 782, 1516, 1576, 1631
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 1 cut(s) 27
AvrII CCTAGG 1 cut(s) 751
BaeGI GKGCMC 1 cut(s) 375
BalI TGGCCA 1 cut(s) 1165
BanI GGYRCC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 1613
BbvI GCAGC 1 cut(s) 1646
BceAI ACGGC 1 cut(s) 845
BclI TGATCA 1 cut(s) 1306
BcnI CCSGG 3 cut(s) 175, 375, 1540
BcoDI GTCTC 4 cut(s) 110, 142, 225, 784
BfaI CTAG 3 cut(s) 84, 752, 1337
BfmI CTRYAG 4 cut(s) 56, 274, 668, 1431
BisI GCNGC 2 cut(s) 155, 1635
BlnI CCTAGG 1 cut(s) 751
BlsI GCNGC 2 cut(s) 156, 1636
Bme1390I CCNGG 3 cut(s) 175, 375, 1540
Bme18I GGWCC 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 2 cut(s) 27, 226
BmiI GGNNCC 2 cut(s) 28, 372
BmrFI CCNGG 3 cut(s) 175, 375, 1540
BmrI ACTGGG 1 cut(s) 464
BmsI GCATC 3 cut(s) 589, 871, 1565
BmuI ACTGGG 1 cut(s) 464
BplI GAGNNNNNCTC 2 cut(s) 764, 796
BpmI CTGGAG 1 cut(s) 1532
Bpu10I CCTNAGC 1 cut(s) 569
BpuMI CCSGG 3 cut(s) 175, 375, 1540
Bsa29I ATCGAT 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 1015
BsaBI GATNNNNATC 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 91
BsaI GGTCTC 2 cut(s) 142, 784
BsaJI CCNNGG 5 cut(s) 174, 190, 607, 751, 861
BsaWI WCCGGW 2 cut(s) 308, 1279
BsaXI ACNNNNNCTCC 3 cut(s) 1589, 1619, 1631
Bsc4I CCNNNNNNNGG 7 cut(s) 77, 112, 670, 767, 989, 1100, 1216
Bse1I ACTGG 2 cut(s) 459, 1084
Bse8I GATNNNNATC 1 cut(s) 260
BseAI TCCGGA 1 cut(s) 1279
BseCI ATCGAT 1 cut(s) 254
BseDI CCNNGG 5 cut(s) 174, 190, 607, 751, 861
BseGI GGATG 2 cut(s) 355, 1140
BseJI GATNNNNATC 1 cut(s) 260
BseLI CCNNNNNNNGG 7 cut(s) 77, 112, 670, 767, 989, 1100, 1216
BseMII CTCAG 4 cut(s) 528, 559, 583, 783
BseNI ACTGG 2 cut(s) 459, 1084
BseRI GAGGAG 8 cut(s) 128, 295, 436, 638, 653, 1262, 1424, 1427
BseSI GKGCMC 1 cut(s) 375
BseX3I CGGCCG 1 cut(s) 393
BseXI GCAGC 1 cut(s) 1646
Bsh1285I CGRYCG 3 cut(s) 24, 313, 396
BshFI GGCC 4 cut(s) 227, 395, 674, 1165
BshNI GGYRCC 1 cut(s) 370
BshVI ATCGAT 1 cut(s) 254
BsiEI CGRYCG 3 cut(s) 24, 313, 396
BsiHKCI CYCGRG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 1022, 1151
BslI CCNNNNNNNGG 7 cut(s) 77, 112, 670, 767, 989, 1100, 1216
BsmAI GTCTC 4 cut(s) 110, 142, 225, 784
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 2 cut(s) 1022, 1151
BsmI GAATGC 3 cut(s) 602, 762, 901
BsnI GGCC 4 cut(s) 227, 395, 674, 1165
Bso31I GGTCTC 2 cut(s) 142, 784
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 375, 1613
Bsp13I TCCGGA 1 cut(s) 1279
Bsp19I CCATGG 1 cut(s) 607
BspACI CCGC 2 cut(s) 152, 155
BspANI GGCC 4 cut(s) 227, 395, 674, 1165
BspCNI CTCAG 4 cut(s) 527, 558, 582, 784
BspDI ATCGAT 1 cut(s) 254
BspEI TCCGGA 1 cut(s) 1279
BspLI GGNNCC 2 cut(s) 28, 372
BspMAI CTGCAG 1 cut(s) 1435
BspPI GGATC 4 cut(s) 115, 181, 731, 742
BspT107I GGYRCC 1 cut(s) 370
BspTNI GGTCTC 2 cut(s) 142, 784
BsrI ACTGG 2 cut(s) 459, 1084
BssECI CCNNGG 5 cut(s) 174, 190, 607, 751, 861
BssNI GRCGYC 1 cut(s) 91
BssT1I CCWWGG 3 cut(s) 190, 607, 751
Bst4CI ACNGT 2 cut(s) 278, 1276
Bst6I CTCTTC 6 cut(s) 348, 413, 436, 701, 1239, 1467
BstACI GRCGYC 1 cut(s) 91
BstBAI YACGTR 1 cut(s) 1015
BstC8I GCNNGC 4 cut(s) 361, 365, 1024, 1055
BstDEI CTNAG 5 cut(s) 514, 545, 569, 792, 1481
BstDSI CCRYGG 2 cut(s) 607, 861
BstENI CCTNNNNNAGG 2 cut(s) 668, 1214
BstF5I GGATG 2 cut(s) 355, 1140
BstHHI GCGC 1 cut(s) 886
BstMAI GTCTC 4 cut(s) 110, 142, 225, 784
BstMCI CGRYCG 3 cut(s) 24, 313, 396
BstMWI GCNNNNNNNGC 3 cut(s) 170, 243, 883
BstSCI CCNGG 3 cut(s) 173, 373, 1538
BstSFI CTRYAG 4 cut(s) 56, 274, 668, 1431
BstSLI GKGCMC 1 cut(s) 375
BstSNI TACGTA 1 cut(s) 1015
BstV1I GCAGC 1 cut(s) 1646
BstX2I RGATCY 2 cut(s) 723, 747
BstXI CCANNNNNNTGG 1 cut(s) 1079
BstYI RGATCY 2 cut(s) 723, 747
BstZI CGGCCG 1 cut(s) 393
Bsu15I ATCGAT 1 cut(s) 254
BsuRI GGCC 4 cut(s) 227, 395, 674, 1165
BsuTUI ATCGAT 1 cut(s) 254
BtgI CCRYGG 2 cut(s) 607, 861
BtsCI GGATG 2 cut(s) 355, 1140
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 318, 553
Cac8I GCNNGC 4 cut(s) 361, 365, 1024, 1055
CaiI CAGNNNCTG 1 cut(s) 1150
CfoI GCGC 1 cut(s) 886
Cfr13I GGNCC 2 cut(s) 27, 226
ClaI ATCGAT 1 cut(s) 254
CseI GACGC 1 cut(s) 99
CviAII CATG 7 cut(s) 341, 386, 608, 683, 1005, 1121, 1501
DdeI CTNAG 5 cut(s) 514, 545, 569, 792, 1481
EaeI YGGCCR 2 cut(s) 393, 1163
EagI CGGCCG 1 cut(s) 393
Eam1104I CTCTTC 6 cut(s) 348, 413, 436, 701, 1239, 1467
EarI CTCTTC 6 cut(s) 348, 413, 436, 701, 1239, 1467
EclXI CGGCCG 1 cut(s) 393
Eco105I TACGTA 1 cut(s) 1015
Eco130I CCWWGG 3 cut(s) 190, 607, 751
Eco147I AGGCCT 1 cut(s) 674
Eco24I GRGCYC 1 cut(s) 1613
Eco31I GGTCTC 2 cut(s) 142, 784
Eco47I GGWCC 1 cut(s) 27
Eco52I CGGCCG 1 cut(s) 393
Eco57I CTGAAG 4 cut(s) 437, 1232, 1353, 1382
Eco88I CYCGRG 1 cut(s) 228
EcoNI CCTNNNNNAGG 2 cut(s) 668, 1214
EcoT14I CCWWGG 3 cut(s) 190, 607, 751
EcoT22I ATGCAT 1 cut(s) 604
EcoT38I GRGCYC 1 cut(s) 1613
ErhI CCWWGG 3 cut(s) 190, 607, 751
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 7 cut(s) 344, 389, 611, 686, 1008, 1124, 1504
FaqI GGGAC 2 cut(s) 1022, 1151
FatI CATG 7 cut(s) 340, 385, 607, 682, 1004, 1120, 1500
FbaI TGATCA 1 cut(s) 1306
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 155, 1635
FokI GGATG 2 cut(s) 362, 1127
FriOI GRGCYC 1 cut(s) 1613
Fsp4HI GCNGC 2 cut(s) 155, 1635
FspBI CTAG 3 cut(s) 84, 752, 1337
GlaI GCGC 1 cut(s) 885
GluI GCNGC 2 cut(s) 155, 1635
GsuI CTGGAG 1 cut(s) 1532
HaeIII GGCC 4 cut(s) 227, 395, 674, 1165
HgaI GACGC 1 cut(s) 99
HhaI GCGC 1 cut(s) 886
Hin1I GRCGYC 1 cut(s) 91
Hin1II CATG 7 cut(s) 344, 389, 611, 686, 1008, 1124, 1504
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 9 cut(s) 75, 241, 315, 378, 541, 1229, 1235, 1507, 1618
HphI GGTGA 6 cut(s) 191, 570, 782, 1516, 1576, 1631
Hpy166II GTNNAC 2 cut(s) 103, 281
Hpy188III TCNNGA 9 cut(s) 129, 265, 721, 727, 1101, 1144, 1280, 1371, 1511
Hpy8I GTNNAC 2 cut(s) 103, 281
Hpy99I CGWCG 2 cut(s) 144, 1564
HpyCH4III ACNGT 2 cut(s) 278, 1276
HpyCH4IV ACGT 1 cut(s) 1014
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 243, 883
HpyF3I CTNAG 5 cut(s) 514, 545, 569, 792, 1481
HpySE526I ACGT 1 cut(s) 1014
Hsp92I GRCGYC 1 cut(s) 91
Hsp92II CATG 7 cut(s) 344, 389, 611, 686, 1008, 1124, 1504
HspAI GCGC 1 cut(s) 884
Kpn2I TCCGGA 1 cut(s) 1279
Ksp22I TGATCA 1 cut(s) 1306
LmnI GCTCC 1 cut(s) 1298
Lsp1109I GCAGC 1 cut(s) 1646
LweI GCATC 3 cut(s) 589, 871, 1565
MaeI CTAG 3 cut(s) 84, 752, 1337
MaeII ACGT 1 cut(s) 1014
MaeIII GTNAC 2 cut(s) 576, 1534
MflI RGATCY 2 cut(s) 723, 747
MhlI GDGCHC 2 cut(s) 375, 1613
MlsI TGGCCA 1 cut(s) 1165
MluNI TGGCCA 1 cut(s) 1165
MlyI GAGTC 1 cut(s) 1612
MmeI TCCRAC 1 cut(s) 834
Mox20I TGGCCA 1 cut(s) 1165
Mph1103I ATGCAT 1 cut(s) 604
MroI TCCGGA 1 cut(s) 1279
MroXI GAANNNNTTC 1 cut(s) 1000
MscI TGGCCA 1 cut(s) 1165
MseI TTAA 3 cut(s) 849, 947, 1173
MslI CAYNNNNRTG 2 cut(s) 339, 687
Msp20I TGGCCA 1 cut(s) 1165
MspR9I CCNGG 3 cut(s) 175, 375, 1540
Mva1269I GAATGC 3 cut(s) 602, 762, 901
MwoI GCNNNNNNNGC 3 cut(s) 170, 243, 883
NciI CCSGG 3 cut(s) 175, 375, 1540
NcoI CCATGG 1 cut(s) 607
NlaIII CATG 7 cut(s) 344, 389, 611, 686, 1008, 1124, 1504
NlaIV GGNNCC 2 cut(s) 28, 372
NmuCI GTSAC 2 cut(s) 576, 1534
NsiI ATGCAT 1 cut(s) 604
PceI AGGCCT 1 cut(s) 674
PctI GAATGC 3 cut(s) 602, 762, 901
PdmI GAANNNNTTC 1 cut(s) 1000
PfeI GAWTC 8 cut(s) 75, 241, 315, 378, 541, 1229, 1235, 1507
PflMI CCANNNNNTGG 1 cut(s) 1100
PkrI GCNGC 2 cut(s) 156, 1636
Ple19I CGATCG 1 cut(s) 24
PleI GAGTC 1 cut(s) 1612
PpsI GAGTC 1 cut(s) 1612
Ppu21I YACGTR 1 cut(s) 1015
PshBI ATTAAT 1 cut(s) 947
PspN4I GGNNCC 2 cut(s) 28, 372
PspPI GGNCC 2 cut(s) 27, 226
PstI CTGCAG 1 cut(s) 1435
PstNI CAGNNNCTG 1 cut(s) 1150
PsuI RGATCY 2 cut(s) 723, 747
PvuI CGATCG 1 cut(s) 24
RseI CAYNNNNRTG 2 cut(s) 339, 687
SalI GTCGAC 1 cut(s) 101
SaqAI TTAA 3 cut(s) 849, 947, 1173
SatI GCNGC 2 cut(s) 155, 1635
Sau96I GGNCC 2 cut(s) 27, 226
SchI GAGTC 1 cut(s) 1612
ScrFI CCNGG 3 cut(s) 175, 375, 1540
SduI GDGCHC 2 cut(s) 375, 1613
SfaNI GCATC 3 cut(s) 589, 871, 1565
SfcI CTRYAG 4 cut(s) 56, 274, 668, 1431
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 2 cut(s) 339, 687
SnaBI TACGTA 1 cut(s) 1015
SseBI AGGCCT 1 cut(s) 674
SsiI CCGC 2 cut(s) 152, 155
SspI AATATT 1 cut(s) 592
SspMI CTAG 3 cut(s) 84, 752, 1337
StuI AGGCCT 1 cut(s) 674
StyD4I CCNGG 3 cut(s) 173, 373, 1538
StyI CCWWGG 3 cut(s) 190, 607, 751
TaaI ACNGT 2 cut(s) 278, 1276
TaiI ACGT 1 cut(s) 1017
TaqI TCGA 7 cut(s) 102, 210, 254, 299, 313, 597, 728
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 8 cut(s) 75, 241, 315, 378, 541, 1229, 1235, 1507
Tru1I TTAA 3 cut(s) 849, 947, 1173
Tru9I TTAA 3 cut(s) 849, 947, 1173
TscAI CASTG 2 cut(s) 325, 553
TseFI GTSAC 2 cut(s) 576, 1534
TseI GCWGC 1 cut(s) 1634
Tsp45I GTSAC 2 cut(s) 576, 1534
TspDTI ATGAA 9 cut(s) 272, 366, 537, 643, 699, 955, 993, 1278, 1479
TspRI CASTG 2 cut(s) 325, 553
Van91I CCANNNNNTGG 1 cut(s) 1100
VpaK11BI GGWCC 1 cut(s) 27
VspI ATTAAT 1 cut(s) 947
XagI CCTNNNNNAGG 2 cut(s) 668, 1214
XapI RAATTY 5 cut(s) 133, 481, 716, 1030, 1543
XmaJI CCTAGG 1 cut(s) 751
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 1000
XspI CTAG 3 cut(s) 84, 752, 1337
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.