Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000100

Physical Location & Seq

Genomic Coordinates Reverse (-)

53805180 .. 53809123

Gene Structure 3944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCCGCCATGATAGACAACGCGAACTCTACTGTGGCTTCGTTTGTTTCAGATTTTTCGCAACGCGCGAAGGATGAGAAGTCGGATGAAACGTTTTTGCCTCTTCCAAAAGGAGAGCCCTTTCTCTCTCTAAAGTCCAAAGCCTTCAACTTTTCGCTTCTGAGTATTCAACCCACAAAGGGGCCTGGTCTTGTTTTGAGGGAAACTCCAAACAGATATCGTAATGCCGAGGTTTGCAGCCTATTGGGATATAGTGGAACACTGAATTCTGTGAAAGGTGCTGAAATTGAAAAGGCTAAATCTTCAAAGCCTGCATTCCACTCTCTTCAAAAAATCTTTGAAAACATGGAGGAGGATAGAGAAGAATCAGAATCGGAGGAAGAGGATAATAGATTAGATGAAGCAAAAACAGTTCCGGAAGAAGAGGATCAGAATTGTGAAAATGAAGAAGATAATCTACAAGTTCGGGTGGTTGAACAGGAAAAAACTTCCGAAAAAAACAAGTGGGAGAAAGAGCTTCAAAGAAAAGGAGGAGGAGATAAGATATATGACTGTGGAGAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

188

Amino Acids

21.26

Weight (kDa)

4.72

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000100)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0248691
rosa_multiflora	Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii	Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa	Rorug03G0270600 Rorug05G0169200
rosa_samantha	Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana	Rw5G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	23, 66, 68
AccIII	TCCGGA	1 cut(s)	415
AciI	CCGC	1 cut(s)	6
AclI	AACGTT	1 cut(s)	92
AclWI	GGATC	1 cut(s)	435
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	265
AfiI	CCNNNNNNNGG	2 cut(s)	179, 180
AgsI	TTSAA	8 cut(s)	148, 170, 290, 306, 329, 341, 476, 521
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	1 cut(s)	517
AluI	AGCT	1 cut(s)	517
AlwI	GGATC	1 cut(s)	435
Aor13HI	TCCGGA	1 cut(s)	415
AoxI	GGCC	2 cut(s)	3, 182
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	120
BarI	GAAGNNNNNNTAC	2 cut(s)	441, 473
BbvI	GCAGC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	186
BisI	GCNGC	2 cut(s)	6, 238
BlsI	GCNGC	2 cut(s)	7, 239
Bme1390I	CCNGG	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	186
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 180
BseAI	TCCGGA	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	79, 91
BseLI	CCNNNNNNNGG	2 cut(s)	179, 180
BseMII	CTCAG	1 cut(s)	152
BseRI	GAGGAG	3 cut(s)	365, 546, 549
BseXI	GCAGC	1 cut(s)	249
Bsh1236I	CGCG	3 cut(s)	23, 66, 68
BshFI	GGCC	2 cut(s)	5, 184
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	179, 180
BsmI	GAATGC	1 cut(s)	314
BsnI	GGCC	2 cut(s)	5, 184
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp13I	TCCGGA	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	5, 184
BspCNI	CTCAG	1 cut(s)	153
BspEI	TCCGGA	1 cut(s)	415
BspFNI	CGCG	3 cut(s)	23, 66, 68
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	435
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	427
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	3 cut(s)	34, 412, 554
Bst6I	CTCTTC	4 cut(s)	108, 330, 375, 417
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	79, 91
BstFNI	CGCG	3 cut(s)	23, 66, 68
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	430
BstMBI	GATC	1 cut(s)	427
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstUI	CGCG	3 cut(s)	23, 66, 68
BstV1I	GCAGC	1 cut(s)	249
BsuRI	GGCC	2 cut(s)	5, 184
BtsCI	GGATG	2 cut(s)	79, 91
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	312
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	182
CviAII	CATG	2 cut(s)	10, 346
CviJI	RGCY	9 cut(s)	5, 38, 118, 143, 184, 240, 296, 310, 517
CviKI_1	RGCY	9 cut(s)	5, 38, 118, 143, 184, 240, 296, 310, 517
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	108, 330, 375, 417
EarI	CTCTTC	4 cut(s)	108, 330, 375, 417
Eco24I	GRGCYC	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	184
EcoRV	GATATC	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	120
FaeI	CATG	2 cut(s)	13, 349
FaiI	YATR	5 cut(s)	11, 252, 347, 547, 549
FatI	CATG	2 cut(s)	9, 345
Fnu4HI	GCNGC	2 cut(s)	6, 238
FokI	GGATG	2 cut(s)	86, 98
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	6, 238
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	2 cut(s)	6, 238
HaeIII	GGCC	2 cut(s)	5, 184
HapII	CCGG	1 cut(s)	416
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	13, 349
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	365, 371
HpaII	CCGG	1 cut(s)	416
Hpy188I	TCNGA	7 cut(s)	52, 85, 162, 370, 376, 432, 493
Hpy188III	TCNNGA	1 cut(s)	416
HpyAV	CCTTC	2 cut(s)	64, 154
HpyCH4III	ACNGT	3 cut(s)	34, 412, 554
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	237, 314
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	2 cut(s)	13, 349
HspAI	GCGC	1 cut(s)	66
Kpn2I	TCCGGA	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	427
LpnPI	CCDG	5 cut(s)	171, 198, 324, 429, 464
Lsp1109I	GCAGC	1 cut(s)	249
MaeII	ACGT	1 cut(s)	92
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	9 cut(s)	95, 294, 317, 374, 392, 431, 434, 458, 461
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	3 cut(s)	265, 285, 433
MmeI	TCCRAC	1 cut(s)	63
MroI	TCCGGA	1 cut(s)	415
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	3 cut(s)	23, 66, 68
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	2 cut(s)	13, 349
NlaIV	GGNNCC	1 cut(s)	183
NmeAIII	GCCGAG	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	2 cut(s)	65, 89
PctI	GAATGC	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	365, 371
PkrI	GCNGC	2 cut(s)	7, 239
Psp1406I	AACGTT	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	182
SatI	GCNGC	2 cut(s)	6, 238
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	4 cut(s)	95, 234, 280, 519
Sse9I	AATT	3 cut(s)	265, 285, 433
SsiI	CCGC	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	3 cut(s)	34, 412, 554
TaiI	ACGT	1 cut(s)	95
TasI	AATT	3 cut(s)	265, 285, 433
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	365, 371
TscAI	CASTG	1 cut(s)	267
TseI	GCWGC	1 cut(s)	237
TspDTI	ATGAA	3 cut(s)	102, 414, 459
TspRI	CASTG	1 cut(s)	267
XapI	RAATTY	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.