Rmu_ssc0000189.1_g000048

Plant mobile domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000189.1
Physical Location & Seq
Reverse (-)
327368 .. 327919
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000189.1_g000048.1.cds

Sequence Viewer

Length: 552 bp
ctgagtctaggaacattagatttgctcaggcagacaccatttggaaaaattgtagatgcattccatggtggctacatagaggagaagtcagccaagaaatctgatgatttcattaccctcctactgcaggcatacaaccatgaaaaggatctcttcttctttggaaagaagaaattcaagatctcgactagagatatttcaaagatcctaggactactagcaaaaggtgagttggtcccaaaaagttctgagggtgcatatcagtccgaatttgtcaagaagttttttccaaacacagcgagaattaacaagaaagctgtggagaaagttctgcaaaatgccatcaaagacaagccaacaacagaggaagggattgagaaaaaggacaaaaatgtggcaagcttaatcttgctggacttgtcaatcaagtttttgttcccaaacgcagggggaacaatttcatgggattacgtcaaagcctgcgaaaatttggataagattggatcttatgactgggcaaaggaagtcggaatcaaaaaaattaaaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

183

Amino Acids

20.58

Weight (kDa)

9.36

Isoelectric Point (pI)

27.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 156, 199, 511
AcsI RAATTY 3 cut(s) 173, 269, 487
AfiI CCNNNNNNNGG 3 cut(s) 127, 145, 446
AgsI TTSAA 2 cut(s) 178, 201
AluBI AGCT 2 cut(s) 317, 402
AluI AGCT 2 cut(s) 317, 402
AlwI GGATC 3 cut(s) 156, 199, 511
ApoI RAATTY 3 cut(s) 173, 269, 487
Asp700I GAANNNNTTC 2 cut(s) 173, 457
AspA2I CCTAGG 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 239
AvaII GGWCC 1 cut(s) 235
AvrII CCTAGG 1 cut(s) 208
BccI CCATC 1 cut(s) 350
BfaI CTAG 4 cut(s) 8, 189, 209, 218
BfmI CTRYAG 1 cut(s) 125
BglII AGATCT 1 cut(s) 180
BlnI CCTAGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 237
BmrI ACTGGG 1 cut(s) 523
BmsI GCATC 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 523
Bpu10I CCTNAGC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 64, 208
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 145, 446
Bse1I ACTGG 1 cut(s) 518
BseDI CCNNGG 2 cut(s) 64, 208
BseLI CCNNNNNNNGG 3 cut(s) 127, 145, 446
BseMII CTCAG 2 cut(s) 40, 240
BseNI ACTGG 1 cut(s) 518
BseRI GAGGAG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 3 cut(s) 127, 145, 446
BsmFI GGGAC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 59
Bsp143I GATC 4 cut(s) 148, 180, 204, 503
Bsp19I CCATGG 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 39, 241
BspLI GGNNCC 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 129
BspPI GGATC 3 cut(s) 156, 199, 511
BsrI ACTGG 1 cut(s) 518
BssECI CCNNGG 2 cut(s) 64, 208
BssMI GATC 4 cut(s) 148, 180, 204, 503
BssT1I CCWWGG 2 cut(s) 64, 208
Bst6I CTCTTC 1 cut(s) 158
BstC8I GCNNGC 3 cut(s) 129, 400, 481
BstDEI CTNAG 3 cut(s) 2, 26, 249
BstDSI CCRYGG 1 cut(s) 64
BstENI CCTNNNNNAGG 1 cut(s) 125
BstKTI GATC 4 cut(s) 151, 183, 207, 506
BstMBI GATC 4 cut(s) 148, 180, 204, 503
BstSFI CTRYAG 1 cut(s) 125
BstX2I RGATCY 4 cut(s) 148, 180, 204, 503
BstYI RGATCY 4 cut(s) 148, 180, 204, 503
BtgI CCRYGG 1 cut(s) 64
Cac8I GCNNGC 3 cut(s) 129, 400, 481
Cfr13I GGNCC 1 cut(s) 235
CviAII CATG 3 cut(s) 65, 140, 462
CviJI RGCY 6 cut(s) 72, 92, 317, 355, 402, 479
CviKI_1 RGCY 6 cut(s) 72, 92, 317, 355, 402, 479
DdeI CTNAG 3 cut(s) 2, 26, 249
DpnI GATC 4 cut(s) 150, 182, 206, 505
DpnII GATC 4 cut(s) 148, 180, 204, 503
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco130I CCWWGG 2 cut(s) 64, 208
Eco47I GGWCC 1 cut(s) 235
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoT14I CCWWGG 2 cut(s) 64, 208
EcoT22I ATGCAT 1 cut(s) 61
ErhI CCWWGG 2 cut(s) 64, 208
FaeI CATG 3 cut(s) 68, 143, 465
FaiI YATR 7 cut(s) 66, 77, 133, 141, 259, 463, 510
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 1 cut(s) 221
FatI CATG 3 cut(s) 64, 139, 461
FspBI CTAG 4 cut(s) 8, 189, 209, 218
Hin1II CATG 3 cut(s) 68, 143, 465
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 2 cut(s) 4, 531
HphI GGTGA 1 cut(s) 239
Hpy188I TCNGA 4 cut(s) 103, 250, 268, 530
Hpy188III TCNNGA 3 cut(s) 178, 184, 277
HpyAV CCTTC 1 cut(s) 362
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 4 cut(s) 59, 127, 257, 334
HpyF3I CTNAG 3 cut(s) 2, 26, 249
HpySE526I ACGT 1 cut(s) 471
Hsp92II CATG 3 cut(s) 68, 143, 465
Kzo9I GATC 4 cut(s) 148, 180, 204, 503
LpnPI CCDG 6 cut(s) 13, 113, 398, 432, 493, 499
LweI GCATC 1 cut(s) 46
MaeI CTAG 4 cut(s) 8, 189, 209, 218
MaeII ACGT 1 cut(s) 471
MalI GATC 4 cut(s) 150, 182, 206, 505
MboI GATC 4 cut(s) 148, 180, 204, 503
MboII GAAGA 3 cut(s) 145, 148, 181
MflI RGATCY 4 cut(s) 148, 180, 204, 503
MluCI AATT 7 cut(s) 48, 173, 269, 303, 456, 487, 540
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 508
MnlI CCTC 4 cut(s) 73, 128, 244, 358
Mph1103I ATGCAT 1 cut(s) 61
MroXI GAANNNNTTC 2 cut(s) 173, 457
MseI TTAA 3 cut(s) 306, 404, 543
Mva1269I GAATGC 1 cut(s) 59
NcoI CCATGG 1 cut(s) 64
NdeII GATC 4 cut(s) 148, 180, 204, 503
NlaIII CATG 3 cut(s) 68, 143, 465
NlaIV GGNNCC 1 cut(s) 237
NsiI ATGCAT 1 cut(s) 61
PctI GAATGC 1 cut(s) 59
PdmI GAANNNNTTC 2 cut(s) 173, 457
PfeI GAWTC 1 cut(s) 531
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 235
PstI CTGCAG 1 cut(s) 129
PsuI RGATCY 4 cut(s) 148, 180, 204, 503
SaqAI TTAA 3 cut(s) 306, 404, 543
Sau3AI GATC 4 cut(s) 148, 180, 204, 503
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 1 cut(s) 13
SetI ASST 4 cut(s) 229, 319, 404, 474
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 125
SinI GGWCC 1 cut(s) 235
Sse9I AATT 7 cut(s) 48, 173, 269, 303, 456, 487, 540
SspMI CTAG 4 cut(s) 8, 189, 209, 218
StyI CCWWGG 2 cut(s) 64, 208
TaiI ACGT 1 cut(s) 474
TaqI TCGA 1 cut(s) 185
TasI AATT 7 cut(s) 48, 173, 269, 303, 456, 487, 540
TfiI GAWTC 1 cut(s) 531
Tru1I TTAA 3 cut(s) 306, 404, 543
Tru9I TTAA 3 cut(s) 306, 404, 543
TspDTI ATGAA 3 cut(s) 100, 156, 450
VpaK11BI GGWCC 1 cut(s) 235
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 3 cut(s) 173, 269, 487
XmaJI CCTAGG 1 cut(s) 208
XmnI GAANNNNTTC 2 cut(s) 173, 457
XspI CTAG 4 cut(s) 8, 189, 209, 218
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.