Rroxscaffold_6G00422210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000100
Physical Location & Seq
Forward (+)
43190779 .. 43191522
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00422210.1

Sequence Viewer

Length: 744 bp
ATGATAAACGAAGAAAGAATTGGAGACAAATCTTCGAAAAAGGAAGAAGAGCTAAGAGATGTGGAAATAGAGAAAAAGGGCTTGGAAGAAAAAATAAGGAAATTGGAGAAAGGACTGGAAACAAGAGAAAAGAAAGCTGACCACATTAACAATGAGAAGATGGAGACAGAGATAGGGAAGACCAATGAAGAGAAGAACGAATTACAGAGAAAGTCGGAGGGAAAGGAAGAAGAGATAAGTGCTTTGAAAAAAGAACTTCAGGAGAAAGAAAAGGAAATTGGCAGAATAAACGAAGAGATGGAGGATGTGTTATTGGAAAATGAGGTGGTGAAAATTGAGAAAGCCTCAATGATTGAAAGAGGGAAAATTGGCAGAACGTACGAAGAGAAGGATGATGTGTTAATGGAAAATGAGGTGCTGAAAATTGAGAGAGCCTCACCGATTAAAAGAGTGAAGCAATTGGAGGGCATAGTGATGACACTAACCGAGAAGTATGAGTCTCCAATAGCACGTCCAGGTGATGACAACTACTCAACTCCTCCTCCACCACCACCTAGTTTCCCTCCACCAAAATCAAAGGCCCCTCAGACAAGCCAACTGATAGCAAGCACTCCAAAAACACAAAATCTCAAGCTGGAATTCAGAAACTCAATCACAACCTCGCCTACTCCACAAGCAAGCGCATCCGAGATGACATCTCGCAGAACCCGACTCTACCAACCGAGGACATCGGTCACCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

28.35

Weight (kDa)

5.56

Isoelectric Point (pI)

58.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 638
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 1 cut(s) 380
AgsI TTSAA 2 cut(s) 247, 356
AjiI CACGTC 1 cut(s) 512
AjnI CCWGG 1 cut(s) 514
AjuI GAANNNNNNNTTGG 5 cut(s) 35, 65, 97, 261, 293
AluBI AGCT 3 cut(s) 52, 137, 634
AluI AGCT 3 cut(s) 52, 137, 634
Alw26I GTCTC 3 cut(s) 18, 158, 504
AoxI GGCC 1 cut(s) 579
ApoI RAATTY 1 cut(s) 638
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 1 cut(s) 580
AsuHPI GGTGA 4 cut(s) 340, 429, 530, 727
AsuII TTCGAA 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 185
BccI CCATC 2 cut(s) 154, 292
BciT130I CCWGG 1 cut(s) 516
BcoDI GTCTC 3 cut(s) 18, 158, 504
BfaI CTAG 1 cut(s) 555
Bme1390I CCNGG 1 cut(s) 516
BmgBI CACGTC 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 580
BmiI GGNNCC 1 cut(s) 582
BmrFI CCNGG 1 cut(s) 516
BmsI GCATC 1 cut(s) 692
BoxI GACNNNNGTC 1 cut(s) 731
BpiI GAAGAC 1 cut(s) 185
BplI GAGNNNNNCTC 4 cut(s) 329, 361, 419, 451
Bpu14I TTCGAA 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 614
BsaJI CCNNGG 1 cut(s) 722
BsaXI ACNNNNNCTCC 4 cut(s) 293, 323, 526, 556
Bse1I ACTGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 1 cut(s) 722
BseGI GGATG 3 cut(s) 310, 397, 683
BseMII CTCAG 1 cut(s) 599
BseNI ACTGG 1 cut(s) 120
BseRI GAGGAG 2 cut(s) 528, 531
BshFI GGCC 1 cut(s) 581
BsiWI CGTACG 1 cut(s) 378
BsmAI GTCTC 3 cut(s) 18, 158, 504
BsnI GGCC 1 cut(s) 581
Bsp119I TTCGAA 1 cut(s) 35
BspANI GGCC 1 cut(s) 581
BspCNI CTCAG 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 582
BspQI GCTCTTC 1 cut(s) 42
BspT104I TTCGAA 1 cut(s) 35
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 722
Bst2UI CCWGG 1 cut(s) 516
Bst6I CTCTTC 5 cut(s) 42, 183, 225, 288, 378
BstBI TTCGAA 1 cut(s) 35
BstC8I GCNNGC 2 cut(s) 607, 679
BstDEI CTNAG 2 cut(s) 53, 585
BstEII GGTNACC 1 cut(s) 733
BstF5I GGATG 3 cut(s) 310, 397, 683
BstHHI GCGC 1 cut(s) 683
BstMAI GTCTC 3 cut(s) 18, 158, 504
BstNI CCWGG 1 cut(s) 516
BstPAI GACNNNNGTC 1 cut(s) 731
BstPI GGTNACC 1 cut(s) 733
BstSCI CCNGG 1 cut(s) 514
BstV2I GAAGAC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 581
BtrI CACGTC 1 cut(s) 512
BtsCI GGATG 3 cut(s) 310, 397, 683
Cac8I GCNNGC 2 cut(s) 607, 679
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 1 cut(s) 580
Csp6I GTAC 1 cut(s) 379
CviJI RGCY 8 cut(s) 52, 81, 137, 344, 434, 581, 594, 634
CviKI_1 RGCY 8 cut(s) 52, 81, 137, 344, 434, 581, 594, 634
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 2 cut(s) 53, 585
Eam1104I CTCTTC 5 cut(s) 42, 183, 225, 288, 378
EarI CTCTTC 5 cut(s) 42, 183, 225, 288, 378
Eco57I CTGAAG 1 cut(s) 242
Eco91I GGTNACC 1 cut(s) 733
EcoO109I RGGNCCY 1 cut(s) 580
EcoO65I GGTNACC 1 cut(s) 733
EcoRI GAATTC 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 514
FaiI YATR 2 cut(s) 470, 495
FokI GGATG 3 cut(s) 317, 404, 670
FspBI CTAG 1 cut(s) 555
GlaI GCGC 1 cut(s) 682
HaeIII GGCC 1 cut(s) 581
HhaI GCGC 1 cut(s) 683
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HinfI GANTC 2 cut(s) 497, 711
HphI GGTGA 4 cut(s) 340, 429, 530, 727
Hpy188I TCNGA 4 cut(s) 217, 588, 644, 688
Hpy188III TCNNGA 1 cut(s) 260
HpyAV CCTTC 1 cut(s) 382
HpyCH4IV ACGT 2 cut(s) 377, 511
HpyF3I CTNAG 2 cut(s) 53, 585
HpySE526I ACGT 2 cut(s) 377, 511
HspAI GCGC 1 cut(s) 681
LguI GCTCTTC 1 cut(s) 42
LpnPI CCDG 5 cut(s) 101, 245, 501, 528, 620
LweI GCATC 1 cut(s) 692
MaeI CTAG 1 cut(s) 555
MaeII ACGT 2 cut(s) 377, 511
MaeIII GTNAC 1 cut(s) 733
MfeI CAATTG 1 cut(s) 458
MluCI AATT 9 cut(s) 18, 101, 200, 276, 333, 366, 423, 458, 638
MlyI GAGTC 2 cut(s) 506, 705
MmeI TCCRAC 1 cut(s) 195
MseI TTAA 3 cut(s) 147, 401, 444
MslI CAYNNNNRTG 1 cut(s) 473
MspR9I CCNGG 1 cut(s) 516
MunI CAATTG 1 cut(s) 458
MvaI CCWGG 1 cut(s) 516
NlaIV GGNNCC 1 cut(s) 582
NmuCI GTSAC 1 cut(s) 733
NspV TTCGAA 1 cut(s) 35
PciSI GCTCTTC 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 706
Pfl23II CGTACG 1 cut(s) 378
PleI GAGTC 2 cut(s) 505, 705
PpsI GAGTC 2 cut(s) 505, 705
PshAI GACNNNNGTC 1 cut(s) 731
Psp6I CCWGG 1 cut(s) 514
PspEI GGTNACC 1 cut(s) 733
PspGI CCWGG 1 cut(s) 514
PspLI CGTACG 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 582
PspPI GGNCC 1 cut(s) 580
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 473
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 3 cut(s) 147, 401, 444
Sau96I GGNCC 1 cut(s) 580
SchI GAGTC 2 cut(s) 506, 705
ScrFI CCNGG 1 cut(s) 516
SfaNI GCATC 1 cut(s) 692
SfuI TTCGAA 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 9 cut(s) 18, 101, 200, 276, 333, 366, 423, 458, 638
SspMI CTAG 1 cut(s) 555
StyD4I CCNGG 1 cut(s) 514
TaiI ACGT 2 cut(s) 380, 514
TaqI TCGA 1 cut(s) 35
TaqII GACCGA 1 cut(s) 721
TasI AATT 9 cut(s) 18, 101, 200, 276, 333, 366, 423, 458, 638
Tru1I TTAA 3 cut(s) 147, 401, 444
Tru9I TTAA 3 cut(s) 147, 401, 444
TseFI GTSAC 1 cut(s) 733
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 1 cut(s) 201
XapI RAATTY 1 cut(s) 638
XspI CTAG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.