Rroxscaffold_1G00036070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000100
Physical Location & Seq
Reverse (-)
52725479 .. 52730825
5347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036070.1

Sequence Viewer

Length: 501 bp
ATGTCTTCTGGTTCTGCTTCTTCTCAACCCAGTGTCCGTGAAGCTATTTGGCGCAAGGAACTCGGATCAAATTCAAATCCACCAGTTAGTCAGCCCGTGGCTACTCAGCCAACTGCTCAAGCTTCACTGCTGTACACACCAAAACTCGCTGCCGCAAGCAAGCTCGAGCCACGACACCTAAAGGAACAATCACCGGAAAGCACCGATGAAGCTCGAGCAAGCCAGCCAAACTTGGATCGCCGTCTCAAGCCGCTACCAACTCCCCCAAAAGAAATTCAGGATCTCGACAAGAGATATTTTAAAGATCCTAGGAATGCCGAAAAAGGTGAGTTGGTGCCAAAGTCTTCGAGGGTGCTTATCGGTCCGACTTTATCCGGCAGTTTTTTTCAAACAAAGAGAATTAACAAGAGAGCCGTGGAGAATGCTCGCAAGATGCGATCAAAGACAATCCAACAACAGAGGAAGGGATTGAGAAGAAGGACAAAAATGTGGCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.73

Weight (kDa)

10.72

Isoelectric Point (pI)

67.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AciI CCGC 2 cut(s) 153, 251
AclWI GGATC 4 cut(s) 73, 243, 288, 299
AcsI RAATTY 2 cut(s) 70, 273
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 2 cut(s) 75, 389
AluBI AGCT 4 cut(s) 44, 122, 163, 212
AluI AGCT 4 cut(s) 44, 122, 163, 212
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 4 cut(s) 73, 243, 288, 299
Ama87I CYCGRG 2 cut(s) 164, 213
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 2 cut(s) 70, 273
AspA2I CCTAGG 1 cut(s) 308
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 362
AsuHPI GGTGA 2 cut(s) 183, 338
AvaI CYCGRG 2 cut(s) 164, 213
AvaII GGWCC 1 cut(s) 362
AvrII CCTAGG 1 cut(s) 308
BanI GGYRCC 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 136
BceAI ACGGC 2 cut(s) 225, 398
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 309
BisI GCNGC 3 cut(s) 150, 153, 251
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 3 cut(s) 151, 154, 252
Bme18I GGWCC 1 cut(s) 362
BmeT110I CYCGRG 2 cut(s) 164, 213
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 336
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 423
BmuI ACTGGG 1 cut(s) 24
BpiI GAAGAC 1 cut(s) 336
BpuEI CTTGAG 2 cut(s) 102, 230
BsaJI CCNNGG 3 cut(s) 96, 308, 414
BsaWI WCCGGW 1 cut(s) 193
Bse1I ACTGG 2 cut(s) 30, 83
BseDI CCNNGG 3 cut(s) 96, 308, 414
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 2 cut(s) 30, 83
BseXI GCAGC 1 cut(s) 136
BshNI GGYRCC 1 cut(s) 334
BsiHKCI CYCGRG 2 cut(s) 164, 213
BsiSI CCGG 2 cut(s) 194, 375
BsmAI GTCTC 1 cut(s) 248
BsmBI CGTCTC 1 cut(s) 248
BsmI GAATGC 2 cut(s) 319, 427
BsoBI CYCGRG 2 cut(s) 164, 213
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 5 cut(s) 65, 235, 280, 304, 437
BspACI CCGC 2 cut(s) 153, 251
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 4 cut(s) 73, 243, 288, 299
BspT107I GGYRCC 1 cut(s) 334
BsrGI TGTACA 1 cut(s) 132
BsrI ACTGG 2 cut(s) 30, 83
BssECI CCNNGG 3 cut(s) 96, 308, 414
BssMI GATC 5 cut(s) 65, 235, 280, 304, 437
BssT1I CCWWGG 1 cut(s) 308
BstAUI TGTACA 1 cut(s) 132
BstC8I GCNNGC 5 cut(s) 157, 161, 220, 224, 427
BstDEI CTNAG 1 cut(s) 105
BstDSI CCRYGG 2 cut(s) 96, 414
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 5 cut(s) 68, 238, 283, 307, 440
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 5 cut(s) 65, 235, 280, 304, 437
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 2 cut(s) 280, 304
BstYI RGATCY 2 cut(s) 280, 304
BtgI CCRYGG 2 cut(s) 96, 414
BtsI GCAGTG 1 cut(s) 125
BtsIMutI CAGTG 2 cut(s) 37, 125
Cac8I GCNNGC 5 cut(s) 157, 161, 220, 224, 427
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 362
CpoI CGGWCCG 1 cut(s) 362
Csp6I GTAC 1 cut(s) 133
CspI CGGWCCG 1 cut(s) 362
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 105
DpnI GATC 5 cut(s) 67, 237, 282, 306, 439
DpnII GATC 5 cut(s) 65, 235, 280, 304, 437
DraI TTTAAA 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 362
Eco88I CYCGRG 2 cut(s) 164, 213
EcoT14I CCWWGG 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 308
Esp3I CGTCTC 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 150, 153, 251
Fsp4HI GCNGC 3 cut(s) 150, 153, 251
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 53
GluI GCNGC 3 cut(s) 150, 153, 251
HapII CCGG 2 cut(s) 194, 375
HhaI GCGC 1 cut(s) 54
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 120
HpaII CCGG 2 cut(s) 194, 375
HphI GGTGA 2 cut(s) 183, 338
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 65, 366
Hpy188III TCNNGA 2 cut(s) 278, 284
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 2 cut(s) 457, 471
HpyF3I CTNAG 1 cut(s) 105
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 5 cut(s) 65, 235, 280, 304, 437
LpnPI CCDG 6 cut(s) 43, 96, 207, 236, 263, 388
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 423
MaeI CTAG 1 cut(s) 309
MalI GATC 5 cut(s) 67, 237, 282, 306, 439
MboI GATC 5 cut(s) 65, 235, 280, 304, 437
MboII GAAGA 3 cut(s) 12, 336, 486
MflI RGATCY 2 cut(s) 280, 304
MluCI AATT 3 cut(s) 70, 273, 399
MmeI TCCRAC 2 cut(s) 389, 475
MnlI CCTC 2 cut(s) 342, 453
MseI TTAA 3 cut(s) 300, 402, 499
MspI CCGG 2 cut(s) 194, 375
Mva1269I GAATGC 2 cut(s) 319, 427
NdeII GATC 5 cut(s) 65, 235, 280, 304, 437
NlaIV GGNNCC 1 cut(s) 336
PaeR7I CTCGAG 2 cut(s) 164, 213
PcsI WCGNNNNNNNCGW 1 cut(s) 433
PctI GAATGC 2 cut(s) 319, 427
PkrI GCNGC 3 cut(s) 151, 154, 252
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 362
PspXI VCTCGAGB 2 cut(s) 164, 213
PsuI RGATCY 2 cut(s) 280, 304
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
Rsr2I CGGWCCG 1 cut(s) 362
RsrII CGGWCCG 1 cut(s) 362
SaqAI TTAA 3 cut(s) 300, 402, 499
SatI GCNGC 3 cut(s) 150, 153, 251
Sau3AI GATC 5 cut(s) 65, 235, 280, 304, 437
Sau96I GGNCC 1 cut(s) 362
SetI ASST 6 cut(s) 46, 124, 165, 180, 214, 328
SfaNI GCATC 1 cut(s) 423
Sfr274I CTCGAG 2 cut(s) 164, 213
SinI GGWCC 1 cut(s) 362
SlaI CTCGAG 2 cut(s) 164, 213
SmlI CTYRAG 4 cut(s) 117, 164, 213, 245
SmoI CTYRAG 4 cut(s) 117, 164, 213, 245
Sse9I AATT 3 cut(s) 70, 273, 399
SsiI CCGC 2 cut(s) 153, 251
SspMI CTAG 1 cut(s) 309
StyI CCWWGG 1 cut(s) 308
TaqI TCGA 4 cut(s) 165, 214, 285, 347
TaqII GACCGA 1 cut(s) 350
TasI AATT 3 cut(s) 70, 273, 399
TatI WGTACW 1 cut(s) 132
TauI GCSGC 2 cut(s) 155, 253
Tru1I TTAA 3 cut(s) 300, 402, 499
Tru9I TTAA 3 cut(s) 300, 402, 499
TscAI CASTG 2 cut(s) 37, 132
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 2 cut(s) 37, 132
VpaK11BI GGWCC 1 cut(s) 362
XapI RAATTY 2 cut(s) 70, 273
XhoI CTCGAG 2 cut(s) 164, 213
XmaJI CCTAGG 1 cut(s) 308
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.