Rmu_sc0013576.1_g000009

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013576.1
OG0000100
Physical Location & Seq
Forward (+)
18855 .. 21943
3089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013576.1_g000009.1.cds

Sequence Viewer

Length: 747 bp
atgactcacactaacactgtccaccatcataagcccaagagggcaagcacttgccagaagaattacgagatgcacacatcaccatttggaaatattgtcgatgcattccatggtggctacatagaggagaagtccgccaagaaatctgatgatttcattacactcctcctgcaggcctacaaccatgaaaatgacctcttcttctttggaaagaagaaattcaggatctcgacaagagatatttcaaagatcctaggaatgccagaaaaaggtgagttggtcccaaagacttctgagggtgcatatcagtctgactttgtccagcagtttttttcaaacacagcgagaattaacaagagagccgtggagaaagctctgcaaggtgcgctcaaagacaatccaacaacagaggaagggattgagaagaaggacaaaaatgtggcaagattaatcttgctggacttgtccatcaagtttctgttcccaaacgcaggaggaacaatttcatgggactacgtcaaagcctgcgaaaatttggataagatcggatcttatgactgggcaagggaaaaaatctttgaaaacctgaaggaggatagagaggaatcagaatccgaggaagaggagaatagatcagatgaatcaaagacagttccggaaggagaggaaaaaggagctgatgatcagaattgtgaaaacgaagaaaataacctacaagttgaggtggctgaacaggaaacaacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

248

Amino Acids

28.35

Weight (kDa)

5.06

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 655
AciI CCGC 1 cut(s) 135
AclWI GGATC 3 cut(s) 233, 244, 556
AcsI RAATTY 2 cut(s) 218, 532
AcuI CTGAAG 1 cut(s) 608
AfiI CCNNNNNNNGG 4 cut(s) 172, 269, 491, 592
AgsI TTSAA 3 cut(s) 246, 336, 581
AluBI AGCT 2 cut(s) 374, 677
AluI AGCT 2 cut(s) 374, 677
AlwI GGATC 3 cut(s) 233, 244, 556
Aor13HI TCCGGA 1 cut(s) 655
AoxI GGCC 1 cut(s) 174
ApoI RAATTY 2 cut(s) 218, 532
AseI ATTAAT 1 cut(s) 449
Asp700I GAANNNNTTC 2 cut(s) 218, 502
AspA2I CCTAGG 1 cut(s) 253
AspLEI GCGC 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 72, 284
AvaII GGWCC 1 cut(s) 280
AvrII CCTAGG 1 cut(s) 253
BccI CCATC 2 cut(s) 33, 476
BceAI ACGGC 1 cut(s) 347
BclI TGATCA 1 cut(s) 682
BfaI CTAG 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 170
BlnI CCTAGG 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 282
BmrI ACTGGG 1 cut(s) 568
BmsI GCATC 2 cut(s) 60, 91
BmuI ACTGGG 1 cut(s) 568
BsaJI CCNNGG 4 cut(s) 109, 253, 363, 615
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 4 cut(s) 172, 269, 491, 592
Bse1I ACTGG 1 cut(s) 563
BseAI TCCGGA 1 cut(s) 655
BseDI CCNNGG 4 cut(s) 109, 253, 363, 615
BseLI CCNNNNNNNGG 4 cut(s) 172, 269, 491, 592
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 563
BseRI GAGGAG 3 cut(s) 140, 155, 638
BshFI GGCC 1 cut(s) 176
BsiSI CCGG 1 cut(s) 656
BslFI GGGAC 2 cut(s) 266, 524
BslI CCNNNNNNNGG 4 cut(s) 172, 269, 491, 592
BsmFI GGGAC 2 cut(s) 266, 524
BsmI GAATGC 2 cut(s) 104, 264
BsnI GGCC 1 cut(s) 176
Bsp13I TCCGGA 1 cut(s) 655
Bsp143I GATC 6 cut(s) 225, 249, 543, 548, 632, 682
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 1 cut(s) 135
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 286
BspEI TCCGGA 1 cut(s) 655
BspLI GGNNCC 1 cut(s) 282
BspMAI CTGCAG 1 cut(s) 174
BspPI GGATC 3 cut(s) 233, 244, 556
BsrI ACTGG 1 cut(s) 563
BssECI CCNNGG 4 cut(s) 109, 253, 363, 615
BssMI GATC 6 cut(s) 225, 249, 543, 548, 632, 682
BssT1I CCWWGG 2 cut(s) 109, 253
Bst4CI ACNGT 2 cut(s) 19, 652
Bst6I CTCTTC 2 cut(s) 203, 615
BstC8I GCNNGC 3 cut(s) 46, 174, 526
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 2 cut(s) 109, 363
BstENI CCTNNNNNAGG 2 cut(s) 170, 590
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 6 cut(s) 228, 252, 546, 551, 635, 685
BstMBI GATC 6 cut(s) 225, 249, 543, 548, 632, 682
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 170
BstX2I RGATCY 3 cut(s) 225, 249, 548
BstYI RGATCY 3 cut(s) 225, 249, 548
BsuRI GGCC 1 cut(s) 176
BtgI CCRYGG 2 cut(s) 109, 363
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 3 cut(s) 46, 174, 526
CfoI GCGC 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 280
CviAII CATG 3 cut(s) 110, 185, 507
CviJI RGCY 8 cut(s) 34, 117, 176, 362, 374, 524, 677, 728
CviKI_1 RGCY 8 cut(s) 34, 117, 176, 362, 374, 524, 677, 728
DdeI CTNAG 1 cut(s) 294
DpnI GATC 6 cut(s) 227, 251, 545, 550, 634, 684
DpnII GATC 6 cut(s) 225, 249, 543, 548, 632, 682
Eam1104I CTCTTC 2 cut(s) 203, 615
EarI CTCTTC 2 cut(s) 203, 615
EciI GGCGGA 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 109, 253
Eco147I AGGCCT 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 608
EcoNI CCTNNNNNAGG 2 cut(s) 170, 590
EcoT14I CCWWGG 2 cut(s) 109, 253
EcoT22I ATGCAT 1 cut(s) 106
ErhI CCWWGG 2 cut(s) 109, 253
FaeI CATG 3 cut(s) 113, 188, 510
FaiI YATR 7 cut(s) 30, 111, 122, 186, 304, 508, 555
FaqI GGGAC 2 cut(s) 266, 524
FatI CATG 3 cut(s) 109, 184, 506
FbaI TGATCA 1 cut(s) 682
FspBI CTAG 1 cut(s) 254
GlaI GCGC 1 cut(s) 387
HaeIII GGCC 1 cut(s) 176
HapII CCGG 1 cut(s) 656
HhaI GCGC 1 cut(s) 388
Hin1II CATG 3 cut(s) 113, 188, 510
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HinfI GANTC 4 cut(s) 4, 605, 611, 641
HpaII CCGG 1 cut(s) 656
HphI GGTGA 2 cut(s) 72, 284
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 8 cut(s) 148, 295, 313, 548, 610, 616, 637, 687
Hpy188III TCNNGA 3 cut(s) 223, 229, 656
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 4 cut(s) 407, 421, 583, 653
HpyCH4III ACNGT 2 cut(s) 19, 652
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 5 cut(s) 73, 104, 172, 302, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 3 cut(s) 113, 188, 510
HspAI GCGC 1 cut(s) 386
Kpn2I TCCGGA 1 cut(s) 655
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 6 cut(s) 225, 249, 543, 548, 632, 682
LmnI GCTCC 1 cut(s) 674
LweI GCATC 2 cut(s) 60, 91
MaeI CTAG 1 cut(s) 254
MaeII ACGT 1 cut(s) 516
MalI GATC 6 cut(s) 227, 251, 545, 550, 634, 684
MboI GATC 6 cut(s) 225, 249, 543, 548, 632, 682
MboII GAAGA 7 cut(s) 70, 190, 193, 226, 436, 632, 713
MflI RGATCY 3 cut(s) 225, 249, 548
MluCI AATT 6 cut(s) 61, 218, 348, 501, 532, 688
MmeI TCCRAC 1 cut(s) 425
Mph1103I ATGCAT 1 cut(s) 106
MroI TCCGGA 1 cut(s) 655
MroXI GAANNNNTTC 2 cut(s) 218, 502
MseI TTAA 3 cut(s) 351, 449, 745
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 1 cut(s) 656
Mva1269I GAATGC 2 cut(s) 104, 264
MwoI GCNNNNNNNGC 1 cut(s) 385
NcoI CCATGG 1 cut(s) 109
NdeII GATC 6 cut(s) 225, 249, 543, 548, 632, 682
NlaIII CATG 3 cut(s) 113, 188, 510
NlaIV GGNNCC 1 cut(s) 282
NsiI ATGCAT 1 cut(s) 106
PceI AGGCCT 1 cut(s) 176
PctI GAATGC 2 cut(s) 104, 264
PdmI GAANNNNTTC 2 cut(s) 218, 502
PfeI GAWTC 3 cut(s) 605, 611, 641
PflFI GACNNNGTC 2 cut(s) 317, 515
PshBI ATTAAT 1 cut(s) 449
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 1 cut(s) 280
PstI CTGCAG 1 cut(s) 174
PsuI RGATCY 3 cut(s) 225, 249, 548
PsyI GACNNNGTC 2 cut(s) 317, 515
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 3 cut(s) 351, 449, 745
Sau3AI GATC 6 cut(s) 225, 249, 543, 548, 632, 682
Sau96I GGNCC 1 cut(s) 280
SbfI CCTGCAGG 1 cut(s) 174
SdaI CCTGCAGG 1 cut(s) 174
SetI ASST 9 cut(s) 198, 274, 376, 385, 519, 588, 679, 714, 726
SfaNI GCATC 2 cut(s) 60, 91
SfcI CTRYAG 1 cut(s) 170
SinI GGWCC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse8387I CCTGCAGG 1 cut(s) 174
Sse9I AATT 6 cut(s) 61, 218, 348, 501, 532, 688
SseBI AGGCCT 1 cut(s) 176
SsiI CCGC 1 cut(s) 135
SspI AATATT 1 cut(s) 94
SspMI CTAG 1 cut(s) 254
StuI AGGCCT 1 cut(s) 176
StyI CCWWGG 2 cut(s) 109, 253
TaaI ACNGT 2 cut(s) 19, 652
TaiI ACGT 1 cut(s) 519
TaqI TCGA 2 cut(s) 99, 230
TasI AATT 6 cut(s) 61, 218, 348, 501, 532, 688
TfiI GAWTC 3 cut(s) 605, 611, 641
Tru1I TTAA 3 cut(s) 351, 449, 745
Tru9I TTAA 3 cut(s) 351, 449, 745
TscAI CASTG 1 cut(s) 22
TspDTI ATGAA 4 cut(s) 145, 201, 495, 654
TspRI CASTG 1 cut(s) 22
Tth111I GACNNNGTC 2 cut(s) 317, 515
VpaK11BI GGWCC 1 cut(s) 280
VspI ATTAAT 1 cut(s) 449
XagI CCTNNNNNAGG 2 cut(s) 170, 590
XapI RAATTY 2 cut(s) 218, 532
XmaJI CCTAGG 1 cut(s) 253
XmnI GAANNNNTTC 2 cut(s) 218, 502
XspI CTAG 1 cut(s) 254
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.