Rmu_sc0000733.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000733.1
OG0000100
Physical Location & Seq
Reverse (-)
73407 .. 74437
1031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000733.1_g000017.1.cds

Sequence Viewer

Length: 816 bp
atgccctctcttggttataagtcattgaccaagtcactaaccgagtcactgtcacactacatgtcaatggccaagtcacacttcatgtcaccggcccatataactgttgaaaatatgtcactggtaatgtcacatagcatgtcactgacatatggaatatctttctttcagaaaatttctgaaaagctgaaggaggatggagaggaaacagaatctaaggaagagaatactggttctgatgaagagatcatgacgagaggaacaagctccaacaaacaagaaaaagacaagtgggagaaacagcttcaaaaaaatgaggaggaggagataagaagtctgactgtggagaaagagatctcagagaaaagactaatggaaaaagaggataagctaagggaattgacggaggaaaaggtgaatctagaggaacaaaatgctacctttgtgacggagaatttctacctcacatcatcggtgaaggagttagaggaaaaagtgaagaacttagaggaaatcttaatcccaaagacttgcacctcatcagcagctcaacaaaacagtggaagactcttcagtcggggcagctcaatcaccacctcactgcacagtggcccaggaaactcaatcaacacctcccttacacatggctcactttttcagagtcccacagtcttcacactcacagccgatgaaatggaaaaagaacctgctatgtttcatatagtcaacacttccatggctacgagtccccatccactttgttcattgagcgaagaagtagggcagaagacgccagaggagaacaaaaaggcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

30.51

Weight (kDa)

5.15

Isoelectric Point (pI)

69.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 18
AasI GACNNNNNNGTC 1 cut(s) 573
Acc36I ACCTGC 1 cut(s) 715
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 2 cut(s) 174, 454
AcuI CTGAAG 2 cut(s) 209, 556
AcyI GRCGYC 1 cut(s) 791
AfiI CCNNNNNNNGG 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 2 cut(s) 110, 308
AjnI CCWGG 1 cut(s) 613
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 6 cut(s) 187, 267, 304, 391, 548, 585
AluI AGCT 6 cut(s) 187, 267, 304, 391, 548, 585
AoxI GGCC 3 cut(s) 69, 93, 610
ApeKI GCWGC 2 cut(s) 545, 582
ApoI RAATTY 2 cut(s) 174, 454
AspS9I GGNCC 2 cut(s) 94, 611
AsuHPI GGTGA 4 cut(s) 81, 427, 487, 583
BalI TGGCCA 1 cut(s) 71
BbsI GAAGAC 3 cut(s) 571, 664, 794
BbvI GCAGC 2 cut(s) 557, 594
BccI CCATC 2 cut(s) 191, 759
BciT130I CCWGG 1 cut(s) 615
BfaI CTAG 1 cut(s) 422
BfuAI ACCTGC 1 cut(s) 715
BglII AGATCT 1 cut(s) 354
BisI GCNGC 2 cut(s) 546, 583
BlsI GCNGC 2 cut(s) 547, 584
Bme1390I CCNGG 1 cut(s) 615
BmgT120I GGNCC 2 cut(s) 94, 611
BmrFI CCNGG 1 cut(s) 615
BpiI GAAGAC 3 cut(s) 571, 664, 794
Bpu10I CCTNAGC 1 cut(s) 392
BsaHI GRCGYC 1 cut(s) 791
BsaJI CCNNGG 2 cut(s) 613, 735
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 126, 235
BseBI CCWGG 1 cut(s) 615
BseDI CCNNGG 2 cut(s) 613, 735
BseGI GGATG 2 cut(s) 202, 751
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 2 cut(s) 126, 235
BseRI GAGGAG 4 cut(s) 332, 335, 338, 812
BseXI GCAGC 2 cut(s) 557, 594
BsgI GTGCAG 1 cut(s) 587
BshFI GGCC 3 cut(s) 71, 95, 612
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 2 cut(s) 648, 732
BslI CCNNNNNNNGG 1 cut(s) 11
BsmFI GGGAC 2 cut(s) 648, 732
BsnI GGCC 3 cut(s) 71, 95, 612
Bsp143I GATC 2 cut(s) 246, 354
Bsp19I CCATGG 1 cut(s) 735
BspANI GGCC 3 cut(s) 71, 95, 612
BspCNI CTCAG 1 cut(s) 371
BspHI TCATGA 1 cut(s) 249
BspMI ACCTGC 1 cut(s) 715
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 2 cut(s) 126, 235
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 613, 735
BssMI GATC 2 cut(s) 246, 354
BssNI GRCGYC 1 cut(s) 791
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 6 cut(s) 51, 106, 343, 560, 608, 670
Bst6I CTCTTC 3 cut(s) 216, 237, 575
BstACI GRCGYC 1 cut(s) 791
BstDEI CTNAG 4 cut(s) 216, 358, 392, 505
BstDSI CCRYGG 1 cut(s) 735
BstF5I GGATG 2 cut(s) 202, 751
BstKTI GATC 2 cut(s) 249, 357
BstMBI GATC 2 cut(s) 246, 354
BstMWI GCNNNNNNNGC 1 cut(s) 790
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 2 cut(s) 64, 142
BstSCI CCNGG 1 cut(s) 613
BstV1I GCAGC 2 cut(s) 557, 594
BstV2I GAAGAC 3 cut(s) 571, 664, 794
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BsuRI GGCC 3 cut(s) 71, 95, 612
BtgI CCRYGG 1 cut(s) 735
BtsCI GGATG 2 cut(s) 202, 751
BtsI GCAGTG 1 cut(s) 599
BtsIMutI CAGTG 6 cut(s) 47, 119, 143, 565, 599, 613
BveI ACCTGC 1 cut(s) 715
CciI TCATGA 1 cut(s) 249
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 94, 611
CseI GACGC 1 cut(s) 799
CviAII CATG 6 cut(s) 61, 85, 139, 250, 644, 736
DdeI CTNAG 4 cut(s) 216, 358, 392, 505
DpnI GATC 2 cut(s) 248, 356
DpnII GATC 2 cut(s) 246, 354
DrdI GACNNNNNNGTC 1 cut(s) 573
DseDI GACNNNNNNGTC 1 cut(s) 573
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 3 cut(s) 216, 237, 575
EarI CTCTTC 3 cut(s) 216, 237, 575
Eco130I CCWWGG 1 cut(s) 735
Eco57I CTGAAG 2 cut(s) 209, 556
EcoRII CCWGG 1 cut(s) 613
EcoT14I CCWWGG 1 cut(s) 735
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 6 cut(s) 64, 88, 142, 253, 647, 739
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FaqI GGGAC 2 cut(s) 648, 732
FatI CATG 6 cut(s) 60, 84, 138, 249, 643, 735
FauNDI CATATG 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 546, 583
FokI GGATG 2 cut(s) 209, 738
Fsp4HI GCNGC 2 cut(s) 546, 583
FspBI CTAG 1 cut(s) 422
GluI GCNGC 2 cut(s) 546, 583
HaeIII GGCC 3 cut(s) 71, 95, 612
HapII CCGG 1 cut(s) 92
HgaI GACGC 1 cut(s) 799
Hin1I GRCGYC 1 cut(s) 791
Hin1II CATG 6 cut(s) 64, 88, 142, 253, 647, 739
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HinfI GANTC 6 cut(s) 44, 212, 418, 567, 661, 745
HpaII CCGG 1 cut(s) 92
HphI GGTGA 4 cut(s) 81, 427, 487, 583
Hpy166II GTNNAC 1 cut(s) 727
Hpy188I TCNGA 6 cut(s) 171, 181, 238, 339, 361, 660
Hpy188III TCNNGA 2 cut(s) 250, 422
Hpy8I GTNNAC 1 cut(s) 727
HpyAV CCTTC 2 cut(s) 184, 472
HpyCH4III ACNGT 6 cut(s) 51, 106, 343, 560, 608, 670
HpyCH4V TGCA 2 cut(s) 534, 604
HpyF10VI GCNNNNNNNGC 1 cut(s) 790
HpyF3I CTNAG 4 cut(s) 216, 358, 392, 505
Hsp92I GRCGYC 1 cut(s) 791
Hsp92II CATG 6 cut(s) 64, 88, 142, 253, 647, 739
Kzo9I GATC 2 cut(s) 246, 354
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 7 cut(s) 105, 107, 216, 600, 627, 720, 807
Lsp1109I GCAGC 2 cut(s) 557, 594
MaeI CTAG 1 cut(s) 422
MaeIII GTNAC 9 cut(s) 33, 45, 51, 75, 87, 117, 129, 141, 445
MalI GATC 2 cut(s) 248, 356
MboI GATC 2 cut(s) 246, 354
MboII GAAGA 8 cut(s) 233, 254, 511, 562, 576, 664, 785, 799
MflI RGATCY 1 cut(s) 354
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 3 cut(s) 174, 398, 454
MluNI TGGCCA 1 cut(s) 71
MlyI GAGTC 4 cut(s) 53, 561, 670, 754
MmeI TCCRAC 1 cut(s) 294
Mox20I TGGCCA 1 cut(s) 71
MscI TGGCCA 1 cut(s) 71
MseI TTAA 1 cut(s) 518
MslI CAYNNNNRTG 2 cut(s) 65, 734
Msp20I TGGCCA 1 cut(s) 71
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 615
MvaI CCWGG 1 cut(s) 615
MwoI GCNNNNNNNGC 1 cut(s) 790
NcoI CCATGG 1 cut(s) 735
NdeI CATATG 1 cut(s) 151
NdeII GATC 2 cut(s) 246, 354
NlaIII CATG 6 cut(s) 64, 88, 142, 253, 647, 739
NmuCI GTSAC 9 cut(s) 33, 45, 51, 75, 87, 117, 129, 141, 445
NspI RCATGY 2 cut(s) 64, 142
PagI TCATGA 1 cut(s) 249
PciI ACATGT 1 cut(s) 60
PfeI GAWTC 2 cut(s) 212, 418
PflFI GACNNNGTC 1 cut(s) 31
PkrI GCNGC 2 cut(s) 547, 584
PleI GAGTC 4 cut(s) 52, 561, 669, 753
PpsI GAGTC 4 cut(s) 52, 561, 669, 753
PscI ACATGT 1 cut(s) 60
PsiI TTATAA 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspPI GGNCC 2 cut(s) 94, 611
PsuI RGATCY 1 cut(s) 354
PsyI GACNNNGTC 1 cut(s) 31
RseI CAYNNNNRTG 2 cut(s) 65, 734
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 2 cut(s) 546, 583
Sau3AI GATC 2 cut(s) 246, 354
Sau96I GGNCC 2 cut(s) 94, 611
SchI GAGTC 4 cut(s) 53, 561, 670, 754
ScrFI CCNGG 1 cut(s) 615
SmiMI CAYNNNNRTG 2 cut(s) 65, 734
Sse9I AATT 3 cut(s) 174, 398, 454
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 613
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 6 cut(s) 51, 106, 343, 560, 608, 670
TasI AATT 3 cut(s) 174, 398, 454
TfiI GAWTC 2 cut(s) 212, 418
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 6 cut(s) 54, 126, 150, 565, 606, 613
TseFI GTSAC 9 cut(s) 33, 45, 51, 75, 87, 117, 129, 141, 445
TseI GCWGC 2 cut(s) 545, 582
Tsp45I GTSAC 9 cut(s) 33, 45, 51, 75, 87, 117, 129, 141, 445
TspDTI ATGAA 5 cut(s) 73, 255, 705, 707, 753
TspGWI ACGGA 2 cut(s) 419, 464
TspRI CASTG 6 cut(s) 54, 126, 150, 565, 606, 613
Tth111I GACNNNGTC 1 cut(s) 31
XapI RAATTY 2 cut(s) 174, 454
XbaI TCTAGA 1 cut(s) 421
XceI RCATGY 2 cut(s) 64, 142
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.