Rorug03G0270600

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000100
Physical Location & Seq
Forward (+)
26686121 .. 26689505
3385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0270600.1

Sequence Viewer

Length: 3291 bp
ATGGCCTCGAGCTCCCAAACAACCTCTTCATCTCTTCCTTCGTCATCAGCTCCTCAGTGGAAGCATGATGTGTTTCTCAGCTTCAGGGGTGAAGACACCCGGAAGGGTATTGTATCCTCTTTATACCATGAATTGAAAACCAGAGGAATACAAACATTCATGGATGACCAAGGGCTTCAGCAAGGGATGCCTATTTCTCCAAGTCTCCTAACAGCGATTGAGGAATCCAGGTGTGCAGTCGTTCTTCTATCGCCAAACTATGCTTCTTCTACATGGTGTTTGGATGAACTTGCAAAGATTCTTCAATGCTCTCAAGCCAACAAGACACTGCTTCTGCCAATTTTTTATAATGTGGATCCCTCTCATGTGCGACATCAAAAGGGAAGTTTTGCAGAAGCCTTCACTAAGCATGAAGAGAGGTATAGGCAAGGCTATGATGATGCAGAGAAGGTGAACAAGTGGAGAGCTGCTTTAACACAAGTGGCCAATCTCTCTGGGTTGGGTTCAAACAAATTTGGGTCTGACAGAGAACTTATCCAACGCATTGTGGAACTTGTGTGCCAGAAAGTACGGCCTATTCCAATAATGCCGAGCAGCAATTTTATAGAATTTGAATCAACAAGAGAAGCCATGAATGAGCTGATGAACGCATTAGAAGATGATAAGGTCGCTGCCATTGGGGTCTATGGAATGGGAGGGGTTGGGAAGACAACCATGGTGGAACATGTCGGTGAACAAGCCCAAAAAAGGGGGCTTTTTGATCATGTGATTATGGCTGTTGTATCCCAAACCCCAAATACAAGAAACATTCAAGACGCACTTGCGGATCTGCTGGGCTTGAAATTGGAGGAGCAGTCAGAAATTGGACGAGCCCGTAGATTGCAGAGGGAGATACGTAAAAGAAACAAGATCCTTATAATCTTAGACGACATTTGGAATACACTTGACTTGACAAGCATTGGAATTCCCTGCTACAACGAGCTTCAAATATGCAATTCCAAACTGCTATTCACCACAAGGAGATTGAATGTTTGCCATACCATGGAGAGCCAAGCAAAAATTCATCTCAATATCTTATCAGAAGATGATGCTTGGAACTTGTTTTTGAAGAAGGCAAGAAGGTCTTTTCAAAAGTCTAGCCCTTTCTATGAAGTAGCCAGAAAGGTAGCTAGAGAATGTGCTGGTCTCCCAATTGCATTGATTGCAGTTGCGAGGGCACTTGGAGATAAAGAGCTTGAAGACTGGAAAGAAGCAGCTCGACAACTTGAGATGTCTCAACCTGCCAACCTTGACGAGGACAAAGATGTGTTCAAGTGCATTAAGTTGAGCTATGATTACCTTGACAGTGACGACGCCAAGTCTTGCTTCTTGCTTTGCTGCCTATTCCCAGAAGATTATGACATCCGTGTTGAAGACTTGATGAGCTATGGGTTCGGAACAGGGTTGTTTCGACATGTCAACAGCACAATAGAATATGCCAGAGTCAGAGCACATTCGGTTACTAGATACCTTAAAGCTTCTTGTCTGCTTTTGGATGGGACAAAAGAAGGATATGTAAGGATGCATGATGTCATTCGAGATACGGCCATATCCATTGCATTATCTGTAGATGGCCACGCCTTTTTGGTGAAAACTAATTGTCATTTGAAAGATTGGTTGATGGATGCGGACGAAGGCTACTCAGCAATCTCACTAATCAAGAGCAACATTTGCAAGCTTCCCAACAAGTTGGTATGTTCAAAACTTCAGATTTTATTGCTACAAAAAAATGCTGATATAAGAGAGATCCCAATAACCTTTTTTCAAAGCCCCAATGATTTAAGGGTCTTAGATCTTAGCAACACTGGCATTTCATCACTGCCCCCATCATTCAGTCTCCTAACCAGACTCCAAGCTTTGCATTTAGATGATTGCGAGTCCATGATTGACATATCCCTACTTGGAAAACTGAAAAAGCTTGAGATTCTTAGTATGAGACGCTGTTATTCTATTAAGAAATTTCCAAAAGAGATTGGAAATTTGACGAATTTAAGAATGTTGGACTTGTCTCAAACCCGTTTTAAGACAGTTCCCTCTCAAGTGATATCAAGGTTGTATAGATTGGAAGTACTGTACATGGGACATTGTTTTCGCGAGTGGGGTTGTAAAGCTGCGGGAGGCTGCTTGTGTTTTCTTTGTAAGAATGCTAGCTTTGATGAGTTAATTGGCTTGTCAAGTTTAAACACTTTGGAGGTTGTCGTATGTGGTGCAAAATGCTTGCCTCAAAACGTTGAGTTCAATCCAAATTGGGAGAGGTTTCGTATAATTGTCCAAAGAGACGACACGGGCGGTTCTTACTTTTATGACGAGGGCTTCCCAAGTTGTATTTCAAGAACATTGATCACGGCCGAAACCATGAATAACTTACCCGACTGGTTCATCAGTGTAGTGACAGAAAGAACATATGATTTATGGTACACAGGTCGCCATGGCTTAACTAACCTTCTCGAGGAACACGACCGTGGGAGATTACATGGACTCAGGTATTTGTCTATAGAATCCTCTGAATATGCCAAAGTGTTGTTGAACACAATAACATGGACTAGGGTGTCAAATGAACCTGTGTTTGAGAACTTGGAAGAGTTGGATATCTCCGCGAGTCTCTTGGAGGAGCTATGTGTCGGTGAATTACCACCTGGCTCTCTACGTAATCTTAAGACATTGATAATGGTTAAGTGTGATTGGTTGGTGAAACCGCTTTTACCGTCAAAGTTGTTGCACAGATTAGAGAGTCTGGAAGTACTAGTTTGTCGTTATATGCGGGAAATGAAATATGTGTTTGGATTTGAAGGGCATGAACCACAACACGTTGTCTTGACGAGGCTGAGAATGATTTCATTGGGTTTCATGAACAGCTTAATAAACATATGGGATGGTCCTGCTCCATCTGGAATCTTCCAGAGTCTCAAAATCTTTTCCTTGGTTAATTGCCAGAAACTGGAATATCTCTTCACATCTGATGTAGCTCGATGTCTTCTGCAATTGGAAGACGTTTTGGTAGAGAATTGCAATAGCTTGGACAGAATAATTGAAGCGAGTGAGGAAATAGAGAGCAACAAGATCGTTCTTCCACAGTTGAAGAACTTGGTTTTAAAATGTCTTCCAAACCTCACAAGGCTGTCCAGTACAAGCAGCAGTACTATTGATATTGAAATCGAGTGCCCTACATTGGAACGCTTATATGTCTCTGCGTGCCCCCAGTTATCAATCTCTGCTTCTGATTTCAACAGCAGCAACGAAGTCCAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

1096

Amino Acids

124.11

Weight (kDa)

6.02

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 21 - 192 1.9e-52 TIR domain
TIR_2 PF13676 24 - 121 4.7e-17 TIR domain
NB-ARC PF00931 210 - 373 2.4e-32 NB-ARC domain
AAA_22 PF13401 228 - 328 7.1e-07 AAA domain
LRR_8 PF13855 581 - 638 6e-08 Leucine rich repeat
LRR_14 PF23598 592 - 660 2.1e-06 Leucine-rich repeat region
LRR_14 PF23598 640 - 709 1.3e-09 Leucine-rich repeat region
LRR_RPS2 PF23247 872 - 1017 2.5e-23 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 348, 917
AasI GACNNNNNNGTC 1 cut(s) 2587
Acc36I ACCTGC 1 cut(s) 1288
AccB7I CCANNNNNTGG 2 cut(s) 1042, 2977
AccII CGCG 2 cut(s) 2133, 2636
AciI CCGC 7 cut(s) 824, 1667, 2153, 2328, 2634, 2735, 2800
AclI AACGTT 1 cut(s) 2268
AclWI GGATC 5 cut(s) 350, 363, 834, 904, 1780
AcoI YGGCCR 4 cut(s) 483, 1584, 1612, 2385
AcsI RAATTY 7 cut(s) 512, 608, 963, 1059, 1997, 2017, 2026
AcuI CTGAAG 3 cut(s) 67, 161, 1730
AcyI GRCGYC 1 cut(s) 1353
AfaI GTAC 7 cut(s) 570, 2109, 2114, 2456, 2781, 3166, 3178
AfiI CCNNNNNNNGG 7 cut(s) 747, 748, 1042, 1294, 2488, 2977, 3208
AflII CTTAAG 1 cut(s) 2693
AflIII ACRYGT 3 cut(s) 724, 1453, 2845
AhdI GACNNNNNGTC 1 cut(s) 1357
AhlI ACTAGT 1 cut(s) 2782
AjnI CCWGG 2 cut(s) 227, 2674
AleI CACNNNNGTG 1 cut(s) 2499
Alw21I GWGCWC 2 cut(s) 14, 1492
AlwI GGATC 5 cut(s) 350, 363, 834, 904, 1780
AlwNI CAGNNNCTG 1 cut(s) 2977
Ama87I CYCGRG 2 cut(s) 7, 2486
AoxI GGCC 6 cut(s) 3, 483, 572, 1584, 1612, 2385
ApeKI GCWGC 9 cut(s) 467, 594, 671, 1253, 1377, 2150, 2160, 3171, 3270
ApoI RAATTY 7 cut(s) 512, 608, 963, 1059, 1997, 2017, 2026
ArsI GACNNNNNNTTYG 2 cut(s) 2112, 2144
Asp700I GAANNNNTTC 1 cut(s) 2872
AspS9I GGNCC 1 cut(s) 2915
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 7 cut(s) 101, 463, 743, 1003, 1639, 2675, 2740
AsuNHI GCTAGC 1 cut(s) 2186
AvaI CYCGRG 2 cut(s) 7, 2486
AvaII GGWCC 1 cut(s) 2915
BaeGI GKGCMC 3 cut(s) 1219, 3203, 3236
BaeI ACNNNNGTAYC 2 cut(s) 2446, 2479
BalI TGGCCA 2 cut(s) 485, 1614
BamHI GGATCC 1 cut(s) 355
BanII GRGCYC 2 cut(s) 14, 874
BbsI GAAGAC 7 cut(s) 99, 713, 1245, 1419, 3005, 3033, 3131
Bbv12I GWGCWC 2 cut(s) 14, 1492
BbvI GCAGC 9 cut(s) 454, 606, 658, 1265, 1364, 2137, 2147, 3183, 3282
BccI CCATC 6 cut(s) 1529, 1604, 1654, 1873, 2906, 2932
BceAI ACGGC 3 cut(s) 587, 1599, 2400
BcgI CGANNNNNNTGC 2 cut(s) 3082, 3116
BciT130I CCWGG 2 cut(s) 229, 2676
BciVI GTATCC 2 cut(s) 124, 793
BclI TGATCA 2 cut(s) 760, 2379
BcnI CCSGG 1 cut(s) 100
BcuI ACTAGT 1 cut(s) 2782
BfaI CTAG 6 cut(s) 1137, 1170, 1503, 2187, 2583, 2783
BfmI CTRYAG 2 cut(s) 1605, 2532
BfrI CTTAAG 1 cut(s) 2693
BfuAI ACCTGC 1 cut(s) 1288
BfuI GTATCC 2 cut(s) 124, 793
BglII AGATCT 1 cut(s) 1831
BisI GCNGC 9 cut(s) 468, 595, 672, 1254, 1378, 2151, 2161, 3172, 3271
BlsI GCNGC 9 cut(s) 469, 596, 673, 1255, 1379, 2152, 2162, 3173, 3272
BmcAI AGTACT 3 cut(s) 2109, 2781, 3178
Bme1390I CCNGG 3 cut(s) 100, 229, 2676
Bme18I GGWCC 1 cut(s) 2915
BmeRI GACNNNNNGTC 1 cut(s) 1357
BmeT110I CYCGRG 2 cut(s) 7, 2486
BmgT120I GGNCC 1 cut(s) 2915
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 3 cut(s) 100, 229, 2676
BmrI ACTGGG 1 cut(s) 3232
BmsI GCATC 5 cut(s) 177, 430, 1078, 1551, 1654
BmtI GCTAGC 1 cut(s) 2190
BmuI ACTGGG 1 cut(s) 3232
BpiI GAAGAC 7 cut(s) 99, 713, 1245, 1419, 3005, 3033, 3131
BpuEI CTTGAG 4 cut(s) 297, 1286, 1979, 2061
BpuMI CCSGG 1 cut(s) 100
BsaAI YACGTR 2 cut(s) 896, 2687
BsaHI GRCGYC 1 cut(s) 1353
BsaI GGTCTC 1 cut(s) 1190
BsaJI CCNNGG 6 cut(s) 169, 714, 1041, 2467, 2500, 2958
BsaXI ACNNNNNCTCC 2 cut(s) 839, 869
Bsc4I CCNNNNNNNGG 7 cut(s) 747, 748, 1042, 1294, 2488, 2977, 3208
Bse1I ACTGG 6 cut(s) 1247, 1849, 2417, 2982, 3162, 3238
Bse3DI GCAATG 1 cut(s) 1593
BseBI CCWGG 2 cut(s) 229, 2676
BseDI CCNNGG 6 cut(s) 169, 714, 1041, 2467, 2500, 2958
BseGI GGATG 8 cut(s) 169, 192, 289, 1401, 1540, 1566, 1669, 2917
BseLI CCNNNNNNNGG 7 cut(s) 747, 748, 1042, 1294, 2488, 2977, 3208
BseMI GCAATG 1 cut(s) 1593
BseMII CTCAG 5 cut(s) 68, 91, 1695, 2533, 2855
BseNI ACTGG 6 cut(s) 1247, 1849, 2417, 2982, 3162, 3238
BseRI GAGGAG 3 cut(s) 42, 863, 2663
BseSI GKGCMC 3 cut(s) 1219, 3203, 3236
BseX3I CGGCCG 1 cut(s) 2385
BseXI GCAGC 9 cut(s) 454, 606, 658, 1265, 1364, 2137, 2147, 3183, 3282
BseYI CCCAGC 1 cut(s) 832
BsgI GTGCAG 1 cut(s) 255
Bsh1236I CGCG 2 cut(s) 2133, 2636
Bsh1285I CGRYCG 2 cut(s) 2388, 2500
BshFI GGCC 6 cut(s) 5, 485, 574, 1586, 1614, 2387
BsiEI CGRYCG 2 cut(s) 2388, 2500
BsiHKAI GWGCWC 2 cut(s) 14, 1492
BsiHKCI CYCGRG 2 cut(s) 7, 2486
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 2 cut(s) 1552, 2133
BslI CCNNNNNNNGG 7 cut(s) 747, 748, 1042, 1294, 2488, 2977, 3208
BsmBI CGTCTC 2 cut(s) 1969, 2310
BsmFI GGGAC 2 cut(s) 1552, 2133
BsmI GAATGC 1 cut(s) 2188
BsnI GGCC 6 cut(s) 5, 485, 574, 1586, 1614, 2387
Bso31I GGTCTC 1 cut(s) 1190
BsoBI CYCGRG 2 cut(s) 7, 2486
Bsp1286I GDGCHC 6 cut(s) 14, 874, 1219, 1492, 3203, 3236
Bsp1407I TGTACA 1 cut(s) 2112
Bsp143I GATC 8 cut(s) 355, 760, 826, 909, 1785, 1831, 2379, 3099
Bsp19I CCATGG 3 cut(s) 714, 1041, 2467
Bsp68I TCGCGA 1 cut(s) 2133
BspACI CCGC 7 cut(s) 824, 1667, 2153, 2328, 2634, 2735, 2800
BspANI GGCC 6 cut(s) 5, 485, 574, 1586, 1614, 2387
BspCNI CTCAG 5 cut(s) 67, 90, 1694, 2532, 2856
BspFNI CGCG 2 cut(s) 2133, 2636
BspHI TCATGA 1 cut(s) 2886
BspLI GGNNCC 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 1288
BspOI GCTAGC 1 cut(s) 2190
BspPI GGATC 5 cut(s) 350, 363, 834, 904, 1780
BspTI CTTAAG 1 cut(s) 2693
BspTNI GGTCTC 1 cut(s) 1190
BsrDI GCAATG 1 cut(s) 1593
BsrGI TGTACA 1 cut(s) 2112
BsrI ACTGG 6 cut(s) 1247, 1849, 2417, 2982, 3162, 3238
BssECI CCNNGG 6 cut(s) 169, 714, 1041, 2467, 2500, 2958
BssMI GATC 8 cut(s) 355, 760, 826, 909, 1785, 1831, 2379, 3099
BssNI GRCGYC 1 cut(s) 1353
BssT1I CCWWGG 5 cut(s) 169, 714, 1041, 2467, 2958
Bst2UI CCWGG 2 cut(s) 229, 2676
Bst4CI ACNGT 6 cut(s) 1346, 2068, 2112, 2501, 2745, 3114
Bst6I CTCTTC 5 cut(s) 31, 39, 408, 2613, 2993
BstACI GRCGYC 1 cut(s) 1353
BstAFI CTTAAG 1 cut(s) 2693
BstAPI GCANNNNNTGC 3 cut(s) 187, 1202, 1710
BstAUI TGTACA 1 cut(s) 2112
BstBAI YACGTR 2 cut(s) 896, 2687
BstC8I GCNNGC 4 cut(s) 1715, 2188, 2258, 3232
BstDSI CCRYGG 4 cut(s) 714, 1041, 2467, 2500
BstENI CCTNNNNNAGG 2 cut(s) 1292, 2486
BstF5I GGATG 8 cut(s) 169, 192, 289, 1401, 1540, 1566, 1669, 2917
BstFNI CGCG 2 cut(s) 2133, 2636
BstKTI GATC 8 cut(s) 358, 763, 829, 912, 1788, 1834, 2382, 3102
BstMBI GATC 8 cut(s) 355, 760, 826, 909, 1785, 1831, 2379, 3099
BstMCI CGRYCG 2 cut(s) 2388, 2500
BstMWI GCNNNNNNNGC 4 cut(s) 187, 1202, 1710, 1845
BstNI CCWGG 2 cut(s) 229, 2676
BstNSI RCATGY 2 cut(s) 728, 1457
BstSCI CCNGG 3 cut(s) 98, 227, 2674
BstSFI CTRYAG 2 cut(s) 1605, 2532
BstSLI GKGCMC 3 cut(s) 1219, 3203, 3236
BstSNI TACGTA 2 cut(s) 896, 2687
BstUI CGCG 2 cut(s) 2133, 2636
BstV1I GCAGC 9 cut(s) 454, 606, 658, 1265, 1364, 2137, 2147, 3183, 3282
BstV2I GAAGAC 7 cut(s) 99, 713, 1245, 1419, 3005, 3033, 3131
BstX2I RGATCY 5 cut(s) 355, 826, 909, 1785, 1831
BstXI CCANNNNNNTGG 1 cut(s) 1729
BstYI RGATCY 5 cut(s) 355, 826, 909, 1785, 1831
BstZI CGGCCG 1 cut(s) 2385
BsuI GTATCC 2 cut(s) 124, 793
BsuRI GGCC 6 cut(s) 5, 485, 574, 1586, 1614, 2387
BtgI CCRYGG 4 cut(s) 714, 1041, 2467, 2500
BtsCI GGATG 8 cut(s) 169, 192, 289, 1401, 1540, 1566, 1669, 2917
BtsI GCAGTG 2 cut(s) 326, 1856
BtsIMutI CAGTG 6 cut(s) 62, 326, 1351, 1842, 1856, 2428
BtuMI TCGCGA 1 cut(s) 2133
BveI ACCTGC 1 cut(s) 1288
Cac8I GCNNGC 4 cut(s) 1715, 2188, 2258, 3232
CaiI CAGNNNCTG 1 cut(s) 2977
CciI TCATGA 1 cut(s) 2886
Cfr13I GGNCC 1 cut(s) 2915
CseI GACGC 3 cut(s) 824, 1361, 1986
Csp6I GTAC 7 cut(s) 569, 2108, 2113, 2455, 2780, 3165, 3177
CspCI CAANNNNNGTGG 2 cut(s) 699, 734
CviQI GTAC 7 cut(s) 569, 2108, 2113, 2455, 2780, 3165, 3177
DpnI GATC 8 cut(s) 357, 762, 828, 911, 1787, 1833, 2381, 3101
DpnII GATC 8 cut(s) 355, 760, 826, 909, 1785, 1831, 2379, 3099
DraI TTTAAA 2 cut(s) 2220, 3132
DrdI GACNNNNNNGTC 1 cut(s) 2587
DriI GACNNNNNGTC 1 cut(s) 1357
DseDI GACNNNNNNGTC 1 cut(s) 2587
EaeI YGGCCR 4 cut(s) 483, 1584, 1612, 2385
EagI CGGCCG 1 cut(s) 2385
Eam1104I CTCTTC 5 cut(s) 31, 39, 408, 2613, 2993
Eam1105I GACNNNNNGTC 1 cut(s) 1357
EarI CTCTTC 5 cut(s) 31, 39, 408, 2613, 2993
Ecl136II GAGCTC 1 cut(s) 12
EclXI CGGCCG 1 cut(s) 2385
Eco105I TACGTA 2 cut(s) 896, 2687
Eco130I CCWWGG 5 cut(s) 169, 714, 1041, 2467, 2958
Eco24I GRGCYC 2 cut(s) 14, 874
Eco31I GGTCTC 1 cut(s) 1190
Eco32I GATATC 2 cut(s) 2085, 2629
Eco47I GGWCC 1 cut(s) 2915
Eco52I CGGCCG 1 cut(s) 2385
Eco53kI GAGCTC 1 cut(s) 12
Eco57I CTGAAG 3 cut(s) 67, 161, 1730
Eco88I CYCGRG 2 cut(s) 7, 2486
EcoICRI GAGCTC 1 cut(s) 12
EcoNI CCTNNNNNAGG 2 cut(s) 1292, 2486
EcoRI GAATTC 1 cut(s) 963
EcoRII CCWGG 2 cut(s) 227, 2674
EcoRV GATATC 2 cut(s) 2085, 2629
EcoT14I CCWWGG 5 cut(s) 169, 714, 1041, 2467, 2958
EcoT22I ATGCAT 1 cut(s) 1566
EcoT38I GRGCYC 2 cut(s) 14, 874
ErhI CCWWGG 5 cut(s) 169, 714, 1041, 2467, 2958
Esp3I CGTCTC 2 cut(s) 1969, 2310
FalI AAGNNNNNCTT 6 cut(s) 804, 836, 1108, 1140, 1349, 1381
FaqI GGGAC 2 cut(s) 1552, 2133
FauI CCCGC 2 cut(s) 2146, 2793
FauNDI CATATG 2 cut(s) 2443, 2906
FbaI TGATCA 2 cut(s) 760, 2379
Fnu4HI GCNGC 9 cut(s) 468, 595, 672, 1254, 1378, 2151, 2161, 3172, 3271
FokI GGATG 8 cut(s) 176, 199, 296, 1388, 1547, 1573, 1676, 2924
FriOI GRGCYC 2 cut(s) 14, 874
Fsp4HI GCNGC 9 cut(s) 468, 595, 672, 1254, 1378, 2151, 2161, 3172, 3271
FspBI CTAG 6 cut(s) 1137, 1170, 1503, 2187, 2583, 2783
GluI GCNGC 9 cut(s) 468, 595, 672, 1254, 1378, 2151, 2161, 3172, 3271
GsaI CCCAGC 1 cut(s) 836
HaeIII GGCC 6 cut(s) 5, 485, 574, 1586, 1614, 2387
HapII CCGG 1 cut(s) 100
HgaI GACGC 3 cut(s) 824, 1361, 1986
Hin1I GRCGYC 1 cut(s) 1353
HincII GTYRAC 1 cut(s) 1459
HindII GTYRAC 1 cut(s) 1459
HindIII AAGCTT 4 cut(s) 1515, 1715, 1893, 1955
HpaII CCGG 1 cut(s) 100
HphI GGTGA 7 cut(s) 101, 463, 743, 1003, 1639, 2675, 2740
Hpy166II GTNNAC 4 cut(s) 454, 734, 1459, 2457
Hpy188I TCNGA 9 cut(s) 523, 859, 1081, 1436, 1487, 1749, 2545, 2998, 3259
Hpy8I GTNNAC 4 cut(s) 454, 734, 1459, 2457
Hpy99I CGWCG 1 cut(s) 1355
HpyCH4III ACNGT 6 cut(s) 1346, 2068, 2112, 2501, 2745, 3114
HpyCH4IV ACGT 5 cut(s) 895, 2268, 2686, 2847, 3030
HpyF10VI GCNNNNNNNGC 4 cut(s) 187, 1202, 1710, 1845
HpySE526I ACGT 5 cut(s) 895, 2268, 2686, 2847, 3030
Hsp92I GRCGYC 1 cut(s) 1353
Ksp22I TGATCA 2 cut(s) 760, 2379
Kzo9I GATC 8 cut(s) 355, 760, 826, 909, 1785, 1831, 2379, 3099
LmnI GCTCC 5 cut(s) 17, 55, 850, 2650, 2926
Lsp1109I GCAGC 9 cut(s) 454, 606, 658, 1265, 1364, 2137, 2147, 3183, 3282
LweI GCATC 5 cut(s) 177, 430, 1078, 1551, 1654
MaeI CTAG 6 cut(s) 1137, 1170, 1503, 2187, 2583, 2783
MaeII ACGT 5 cut(s) 895, 2268, 2686, 2847, 3030
MaeIII GTNAC 3 cut(s) 1346, 1498, 2428
MalI GATC 8 cut(s) 357, 762, 828, 911, 1787, 1833, 2381, 3101
MboI GATC 8 cut(s) 355, 760, 826, 909, 1785, 1831, 2379, 3099
MfeI CAATTG 2 cut(s) 1191, 3020
MflI RGATCY 5 cut(s) 355, 826, 909, 1785, 1831
MhlI GDGCHC 6 cut(s) 14, 874, 1219, 1492, 3203, 3236
MlsI TGGCCA 2 cut(s) 485, 1614
MluNI TGGCCA 2 cut(s) 485, 1614
MlyI GAGTC 7 cut(s) 1491, 1881, 1925, 2511, 2647, 2779, 2950
MmeI TCCRAC 3 cut(s) 562, 2019, 2604
Mox20I TGGCCA 2 cut(s) 485, 1614
Mph1103I ATGCAT 1 cut(s) 1566
MroXI GAANNNNTTC 1 cut(s) 2872
MscI TGGCCA 2 cut(s) 485, 1614
MslI CAYNNNNRTG 3 cut(s) 729, 1905, 2499
Msp20I TGGCCA 2 cut(s) 485, 1614
MspCI CTTAAG 1 cut(s) 2693
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 3 cut(s) 100, 229, 2676
MssI GTTTAAAC 1 cut(s) 2220
MunI CAATTG 2 cut(s) 1191, 3020
Mva1269I GAATGC 1 cut(s) 2188
MvaI CCWGG 2 cut(s) 229, 2676
MvnI CGCG 2 cut(s) 2133, 2636
MwoI GCNNNNNNNGC 4 cut(s) 187, 1202, 1710, 1845
NciI CCSGG 1 cut(s) 100
NcoI CCATGG 3 cut(s) 714, 1041, 2467
NdeI CATATG 2 cut(s) 2443, 2906
NdeII GATC 8 cut(s) 355, 760, 826, 909, 1785, 1831, 2379, 3099
NheI GCTAGC 1 cut(s) 2186
NlaIV GGNNCC 1 cut(s) 357
NmeAIII GCCGAG 1 cut(s) 615
NmuCI GTSAC 2 cut(s) 1346, 2428
NruI TCGCGA 1 cut(s) 2133
NsiI ATGCAT 1 cut(s) 1566
NspI RCATGY 2 cut(s) 728, 1457
OliI CACNNNNGTG 1 cut(s) 2499
PaeR7I CTCGAG 2 cut(s) 7, 2486
PagI TCATGA 1 cut(s) 2886
PciI ACATGT 2 cut(s) 724, 1453
PcsI WCGNNNNNNNCGW 1 cut(s) 2493
PctI GAATGC 1 cut(s) 2188
PdmI GAANNNNTTC 1 cut(s) 2872
PfeI GAWTC 6 cut(s) 224, 298, 614, 1963, 2537, 2931
PflMI CCANNNNNTGG 2 cut(s) 1042, 2977
PkrI GCNGC 9 cut(s) 469, 596, 673, 1255, 1379, 2152, 2162, 3173, 3272
PleI GAGTC 7 cut(s) 1490, 1881, 1924, 2511, 2646, 2778, 2949
PmeI GTTTAAAC 1 cut(s) 2220
PpsI GAGTC 7 cut(s) 1490, 1881, 1924, 2511, 2646, 2778, 2949
Ppu21I YACGTR 2 cut(s) 896, 2687
PscI ACATGT 2 cut(s) 724, 1453
PsiI TTATAA 2 cut(s) 348, 917
Psp124BI GAGCTC 1 cut(s) 14
Psp1406I AACGTT 1 cut(s) 2268
Psp6I CCWGG 2 cut(s) 227, 2674
PspFI CCCAGC 1 cut(s) 832
PspGI CCWGG 2 cut(s) 227, 2674
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 1 cut(s) 2915
PspXI VCTCGAGB 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 2977
PsuI RGATCY 5 cut(s) 355, 826, 909, 1785, 1831
RruI TCGCGA 1 cut(s) 2133
RsaI GTAC 7 cut(s) 570, 2109, 2114, 2456, 2781, 3166, 3178
RsaNI GTAC 7 cut(s) 569, 2108, 2113, 2455, 2780, 3165, 3177
RseI CAYNNNNRTG 3 cut(s) 729, 1905, 2499
SacI GAGCTC 1 cut(s) 14
SatI GCNGC 9 cut(s) 468, 595, 672, 1254, 1378, 2151, 2161, 3172, 3271
Sau3AI GATC 8 cut(s) 355, 760, 826, 909, 1785, 1831, 2379, 3099
Sau96I GGNCC 1 cut(s) 2915
ScaI AGTACT 3 cut(s) 2109, 2781, 3178
SchI GAGTC 7 cut(s) 1491, 1881, 1925, 2511, 2647, 2779, 2950
ScrFI CCNGG 3 cut(s) 100, 229, 2676
SduI GDGCHC 6 cut(s) 14, 874, 1219, 1492, 3203, 3236
SfaNI GCATC 5 cut(s) 177, 430, 1078, 1551, 1654
SfcI CTRYAG 2 cut(s) 1605, 2532
Sfr274I CTCGAG 2 cut(s) 7, 2486
SinI GGWCC 1 cut(s) 2915
SlaI CTCGAG 2 cut(s) 7, 2486
SmiMI CAYNNNNRTG 3 cut(s) 729, 1905, 2499
SmlI CTYRAG 7 cut(s) 7, 312, 1265, 1958, 2076, 2486, 2693
SmoI CTYRAG 7 cut(s) 7, 312, 1265, 1958, 2076, 2486, 2693
SnaBI TACGTA 2 cut(s) 896, 2687
SpeI ACTAGT 1 cut(s) 2782
SsiI CCGC 7 cut(s) 824, 1667, 2153, 2328, 2634, 2735, 2800
SspMI CTAG 6 cut(s) 1137, 1170, 1503, 2187, 2583, 2783
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 3 cut(s) 98, 227, 2674
StyI CCWWGG 5 cut(s) 169, 714, 1041, 2467, 2958
TaaI ACNGT 6 cut(s) 1346, 2068, 2112, 2501, 2745, 3114
TaiI ACGT 5 cut(s) 898, 2271, 2689, 2850, 3033
TaqI TCGA 7 cut(s) 8, 1258, 1450, 1576, 2487, 3007, 3195
TatI WGTACW 5 cut(s) 2107, 2112, 2779, 3164, 3176
TfiI GAWTC 6 cut(s) 224, 298, 614, 1963, 2537, 2931
TscAI CASTG 6 cut(s) 62, 333, 1351, 1849, 1863, 2428
TseFI GTSAC 2 cut(s) 1346, 2428
TseI GCWGC 9 cut(s) 467, 594, 671, 1253, 1377, 2150, 2160, 3171, 3270
Tsp45I GTSAC 2 cut(s) 1346, 2428
TspGWI ACGGA 1 cut(s) 1394
TspRI CASTG 6 cut(s) 62, 333, 1351, 1849, 1863, 2428
Van91I CCANNNNNTGG 2 cut(s) 1042, 2977
Vha464I CTTAAG 1 cut(s) 2693
VpaK11BI GGWCC 1 cut(s) 2915
XagI CCTNNNNNAGG 2 cut(s) 1292, 2486
XapI RAATTY 7 cut(s) 512, 608, 963, 1059, 1997, 2017, 2026
XceI RCATGY 2 cut(s) 728, 1457
XhoI CTCGAG 2 cut(s) 7, 2486
XmnI GAANNNNTTC 1 cut(s) 2872
XspI CTAG 6 cut(s) 1137, 1170, 1503, 2187, 2583, 2783
ZrmI AGTACT 3 cut(s) 2109, 2781, 3178
Zsp2I ATGCAT 1 cut(s) 1566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.