Rmu_sc0003880.1_g000041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003880.1
OG0000100
Physical Location & Seq
Reverse (-)
198835 .. 199269
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003880.1_g000041.1.cds

Sequence Viewer

Length: 435 bp
ctggagagaaaggaagaagagctaagtgctttgaaaaaagaagttgaggagaaagaaaaggaaattggcagaataaacgaagaagtgaagggggatgtgttagaagaaaatgaggtgctgaaaattgagaaagcctccctaaattcaagaatgaagcaattggagagcatagtgatggcacttactgagaagtatgagacaccaatagcacgtccaggtgaagacaatgactcaacgcttcctcccccaccgcctagtttccctccgccaaaatcaaaggcccctcaggacaagccaactgacagcaagcactccaaaagcacaaaatctcaatcacaacctgcctactccacaacaaccgcatctgagatgacatctgaggtacctcactcaaccggccgaggacatcagtcaccacttcaatgcctcgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.95

Weight (kDa)

5.35

Isoelectric Point (pI)

68.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 349
Acc65I GGTACC 1 cut(s) 382
AccB1I GGYRCC 1 cut(s) 382
AciI CCGC 3 cut(s) 251, 266, 360
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 1 cut(s) 142
AfaI GTAC 1 cut(s) 384
AgsI TTSAA 3 cut(s) 34, 147, 422
AjiI CACGTC 1 cut(s) 212
AjnI CCWGG 1 cut(s) 214
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 191
AoxI GGCC 2 cut(s) 279, 397
ApoI RAATTY 1 cut(s) 142
Asp718I GGTACC 1 cut(s) 382
AspS9I GGNCC 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 230, 405
AxyI CCTNAGG 1 cut(s) 285
BanI GGYRCC 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 228
BccI CCATC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 216
BmgBI CACGTC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 2 cut(s) 282, 384
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 371
BoxI GACNNNNGTC 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 400
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bse118I RCCGGY 1 cut(s) 395
Bse21I CCTNAGG 1 cut(s) 285
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 400
BseGI GGATG 1 cut(s) 100
BseMII CTCAG 4 cut(s) 177, 299, 357, 369
BseRI GAGGAG 1 cut(s) 62
BseX3I CGGCCG 1 cut(s) 397
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 2 cut(s) 281, 399
BshNI GGYRCC 1 cut(s) 382
BsiEI CGRYCG 1 cut(s) 400
BsiSI CCGG 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 2 cut(s) 281, 399
BspACI CCGC 3 cut(s) 251, 266, 360
BspANI GGCC 2 cut(s) 281, 399
BspCNI CTCAG 4 cut(s) 178, 298, 358, 370
BspLI GGNNCC 2 cut(s) 282, 384
BspMI ACCTGC 1 cut(s) 349
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 395
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 400
Bst2UI CCWGG 1 cut(s) 216
Bst6I CTCTTC 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 5 cut(s) 23, 186, 285, 366, 378
BstF5I GGATG 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 191
BstMCI CGRYCG 1 cut(s) 400
BstNI CCWGG 1 cut(s) 216
BstPAI GACNNNNGTC 1 cut(s) 409
BstSCI CCNGG 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 228
BstZI CGGCCG 1 cut(s) 397
Bsu36I CCTNAGG 1 cut(s) 285
BsuRI GGCC 2 cut(s) 281, 399
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 100
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 308
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 280
Csp6I GTAC 1 cut(s) 383
CviJI RGCY 5 cut(s) 22, 134, 281, 295, 399
CviKI_1 RGCY 5 cut(s) 22, 134, 281, 295, 399
CviQI GTAC 1 cut(s) 383
DdeI CTNAG 5 cut(s) 23, 186, 285, 366, 378
EaeI YGGCCR 1 cut(s) 397
EagI CGGCCG 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
EciI GGCGGA 1 cut(s) 255
EclXI CGGCCG 1 cut(s) 397
Eco52I CGGCCG 1 cut(s) 397
Eco81I CCTNAGG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 214
FaiI YATR 2 cut(s) 170, 195
FokI GGATG 1 cut(s) 107
FspBI CTAG 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 23
HaeIII GGCC 2 cut(s) 281, 399
HapII CCGG 1 cut(s) 396
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 396
HphI GGTGA 2 cut(s) 230, 405
Hpy188I TCNGA 2 cut(s) 367, 379
Hpy188III TCNNGA 2 cut(s) 147, 287
HpyAV CCTTC 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 211
HpyF3I CTNAG 5 cut(s) 23, 186, 285, 366, 378
HpySE526I ACGT 1 cut(s) 211
KpnI GGTACC 1 cut(s) 386
LguI GCTCTTC 1 cut(s) 12
LpnPI CCDG 5 cut(s) 201, 228, 272, 354, 409
LweI GCATC 1 cut(s) 371
MaeI CTAG 1 cut(s) 255
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 411
MboII GAAGA 5 cut(s) 26, 29, 92, 116, 233
MfeI CAATTG 1 cut(s) 158
MluCI AATT 4 cut(s) 63, 123, 142, 158
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 9 cut(s) 40, 106, 145, 252, 273, 294, 373, 395, 396
MslI CAYNNNNRTG 2 cut(s) 173, 421
MspI CCGG 1 cut(s) 396
MspR9I CCNGG 1 cut(s) 216
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 216
NlaIV GGNNCC 2 cut(s) 282, 384
NmeAIII GCCGAG 1 cut(s) 425
NmuCI GTSAC 1 cut(s) 411
PciSI GCTCTTC 1 cut(s) 12
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PshAI GACNNNNGTC 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 282, 384
PspPI GGNCC 1 cut(s) 280
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
RseI CAYNNNNRTG 2 cut(s) 173, 421
SapI GCTCTTC 1 cut(s) 12
Sau96I GGNCC 1 cut(s) 280
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 216
SetI ASST 7 cut(s) 24, 117, 214, 220, 343, 384, 388
SfaNI GCATC 1 cut(s) 371
SmiMI CAYNNNNRTG 2 cut(s) 173, 421
Sse9I AATT 4 cut(s) 63, 123, 142, 158
SsiI CCGC 3 cut(s) 251, 266, 360
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 214
TaiI ACGT 1 cut(s) 214
TasI AATT 4 cut(s) 63, 123, 142, 158
TseFI GTSAC 1 cut(s) 411
Tsp45I GTSAC 1 cut(s) 411
TspDTI ATGAA 1 cut(s) 167
XapI RAATTY 1 cut(s) 142
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.