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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 266, 400 |
| AciI | CCGC | 1 cut(s) | 744 |
| AclWI | GGATC | 4 cut(s) | 36, 49, 131, 754 |
| AcsI | RAATTY | 1 cut(s) | 702 |
| AfaI | GTAC | 1 cut(s) | 57 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 44, 72, 266, 400, 920 |
| AgsI | TTSAA | 3 cut(s) | 154, 235, 794 |
| AjiI | CACGTC | 1 cut(s) | 575 |
| AjnI | CCWGG | 1 cut(s) | 577 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 146, 178, 265, 297, 414, 446 |
| AluBI | AGCT | 4 cut(s) | 149, 333, 812, 926 |
| AluI | AGCT | 4 cut(s) | 149, 333, 812, 926 |
| AlwI | GGATC | 4 cut(s) | 36, 49, 131, 754 |
| AoxI | GGCC | 1 cut(s) | 642 |
| ApeKI | GCWGC | 2 cut(s) | 134, 812 |
| ApoI | RAATTY | 1 cut(s) | 702 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 239 |
| AspS9I | GGNCC | 1 cut(s) | 643 |
| AsuC2I | CCSGG | 3 cut(s) | 39, 46, 921 |
| AsuHPI | GGTGA | 4 cut(s) | 593, 777, 819, 995 |
| AxyI | CCTNAGG | 1 cut(s) | 648 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 970, 1003 |
| BamHI | GGATCC | 1 cut(s) | 41 |
| BbvI | GCAGC | 2 cut(s) | 121, 799 |
| BceAI | ACGGC | 1 cut(s) | 753 |
| BciT130I | CCWGG | 1 cut(s) | 579 |
| BcnI | CCSGG | 3 cut(s) | 39, 46, 921 |
| BfaI | CTAG | 3 cut(s) | 29, 618, 726 |
| BfmI | CTRYAG | 2 cut(s) | 138, 750 |
| BisI | GCNGC | 2 cut(s) | 135, 813 |
| BlsI | GCNGC | 2 cut(s) | 136, 814 |
| Bme1390I | CCNGG | 4 cut(s) | 39, 46, 579, 921 |
| BmgBI | CACGTC | 1 cut(s) | 575 |
| BmgT120I | GGNCC | 1 cut(s) | 643 |
| BmiI | GGNNCC | 2 cut(s) | 43, 645 |
| BmrFI | CCNGG | 4 cut(s) | 39, 46, 579, 921 |
| BmsI | GCATC | 1 cut(s) | 856 |
| BoxI | GACNNNNGTC | 1 cut(s) | 781 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 482, 514 |
| BpmI | CTGGAG | 2 cut(s) | 159, 288 |
| BpuMI | CCSGG | 3 cut(s) | 39, 46, 921 |
| BsaJI | CCNNGG | 1 cut(s) | 735 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 446, 476, 589, 619 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 44, 72, 266, 400, 920 |
| Bse21I | CCTNAGG | 1 cut(s) | 648 |
| BseBI | CCWGG | 1 cut(s) | 579 |
| BseDI | CCNNGG | 1 cut(s) | 735 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 44, 72, 266, 400, 920 |
| BseMII | CTCAG | 2 cut(s) | 540, 662 |
| BseRI | GAGGAG | 1 cut(s) | 428 |
| BseXI | GCAGC | 2 cut(s) | 121, 799 |
| BseYI | CCCAGC | 1 cut(s) | 333 |
| BsgI | GTGCAG | 1 cut(s) | 798 |
| BshFI | GGCC | 1 cut(s) | 644 |
| BsiSI | CCGG | 3 cut(s) | 38, 45, 920 |
| BslFI | GGGAC | 2 cut(s) | 218, 299 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 44, 72, 266, 400, 920 |
| BsmFI | GGGAC | 2 cut(s) | 218, 299 |
| BsmI | GAATGC | 2 cut(s) | 163, 800 |
| BsnI | GGCC | 1 cut(s) | 644 |
| Bsp143I | GATC | 4 cut(s) | 41, 123, 746, 992 |
| BspACI | CCGC | 1 cut(s) | 744 |
| BspANI | GGCC | 1 cut(s) | 644 |
| BspCNI | CTCAG | 2 cut(s) | 541, 661 |
| BspLI | GGNNCC | 2 cut(s) | 43, 645 |
| BspMAI | CTGCAG | 1 cut(s) | 754 |
| BspPI | GGATC | 4 cut(s) | 36, 49, 131, 754 |
| BssECI | CCNNGG | 1 cut(s) | 735 |
| BssMI | GATC | 4 cut(s) | 41, 123, 746, 992 |
| Bst2UI | CCWGG | 1 cut(s) | 579 |
| Bst6I | CTCTTC | 3 cut(s) | 113, 300, 441 |
| BstC8I | GCNNGC | 3 cut(s) | 671, 742, 871 |
| BstDEI | CTNAG | 2 cut(s) | 549, 648 |
| BstDSI | CCRYGG | 1 cut(s) | 735 |
| BstKTI | GATC | 4 cut(s) | 44, 126, 749, 995 |
| BstMBI | GATC | 4 cut(s) | 41, 123, 746, 992 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 809 |
| BstNI | CCWGG | 1 cut(s) | 579 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 781 |
| BstSCI | CCNGG | 4 cut(s) | 37, 44, 577, 919 |
| BstSFI | CTRYAG | 2 cut(s) | 138, 750 |
| BstV1I | GCAGC | 2 cut(s) | 121, 799 |
| BstX2I | RGATCY | 2 cut(s) | 41, 746 |
| BstYI | RGATCY | 2 cut(s) | 41, 746 |
| Bsu36I | CCTNAGG | 1 cut(s) | 648 |
| BsuRI | GGCC | 1 cut(s) | 644 |
| BtgI | CCRYGG | 1 cut(s) | 735 |
| BtrI | CACGTC | 1 cut(s) | 575 |
| BtsIMutI | CAGTG | 1 cut(s) | 500 |
| Cac8I | GCNNGC | 3 cut(s) | 671, 742, 871 |
| Cfr13I | GGNCC | 1 cut(s) | 643 |
| Csp6I | GTAC | 1 cut(s) | 56 |
| CviAII | CATG | 1 cut(s) | 400 |
| CviQI | GTAC | 1 cut(s) | 56 |
| DdeI | CTNAG | 2 cut(s) | 549, 648 |
| DpnI | GATC | 4 cut(s) | 43, 125, 748, 994 |
| DpnII | GATC | 4 cut(s) | 41, 123, 746, 992 |
| Eam1104I | CTCTTC | 3 cut(s) | 113, 300, 441 |
| EarI | CTCTTC | 3 cut(s) | 113, 300, 441 |
| Eco81I | CCTNAGG | 1 cut(s) | 648 |
| EcoO109I | RGGNCCY | 1 cut(s) | 643 |
| EcoRI | GAATTC | 1 cut(s) | 702 |
| EcoRII | CCWGG | 1 cut(s) | 577 |
| EcoT22I | ATGCAT | 2 cut(s) | 163, 901 |
| FaeI | CATG | 1 cut(s) | 403 |
| FaqI | GGGAC | 2 cut(s) | 218, 299 |
| FatI | CATG | 1 cut(s) | 399 |
| Fnu4HI | GCNGC | 2 cut(s) | 135, 813 |
| Fsp4HI | GCNGC | 2 cut(s) | 135, 813 |
| FspBI | CTAG | 3 cut(s) | 29, 618, 726 |
| GluI | GCNGC | 2 cut(s) | 135, 813 |
| GsaI | CCCAGC | 1 cut(s) | 337 |
| GsuI | CTGGAG | 2 cut(s) | 159, 288 |
| HaeIII | GGCC | 1 cut(s) | 644 |
| HapII | CCGG | 3 cut(s) | 38, 45, 920 |
| Hin1II | CATG | 1 cut(s) | 403 |
| HincII | GTYRAC | 1 cut(s) | 6 |
| HindII | GTYRAC | 1 cut(s) | 6 |
| HindIII | AAGCTT | 1 cut(s) | 147 |
| HinfI | GANTC | 6 cut(s) | 25, 297, 389, 560, 593, 731 |
| HpaII | CCGG | 3 cut(s) | 38, 45, 920 |
| HphI | GGTGA | 4 cut(s) | 593, 777, 819, 995 |
| Hpy166II | GTNNAC | 1 cut(s) | 6 |
| Hpy188I | TCNGA | 2 cut(s) | 694, 992 |
| Hpy188III | TCNNGA | 4 cut(s) | 94, 176, 267, 650 |
| Hpy8I | GTNNAC | 1 cut(s) | 6 |
| HpyAV | CCTTC | 2 cut(s) | 65, 445 |
| HpyCH4IV | ACGT | 2 cut(s) | 574, 1028 |
| HpyCH4V | TGCA | 7 cut(s) | 161, 218, 484, 752, 815, 873, 899 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 809 |
| HpyF3I | CTNAG | 2 cut(s) | 549, 648 |
| HpySE526I | ACGT | 2 cut(s) | 574, 1028 |
| Hsp92II | CATG | 1 cut(s) | 403 |
| Kzo9I | GATC | 4 cut(s) | 41, 123, 746, 992 |
| LmnI | GCTCC | 1 cut(s) | 923 |
| Lsp1109I | GCAGC | 2 cut(s) | 121, 799 |
| LweI | GCATC | 1 cut(s) | 856 |
| MaeI | CTAG | 3 cut(s) | 29, 618, 726 |
| MaeII | ACGT | 2 cut(s) | 574, 1028 |
| MaeIII | GTNAC | 2 cut(s) | 94, 783 |
| MalI | GATC | 4 cut(s) | 43, 125, 748, 994 |
| MboI | GATC | 4 cut(s) | 41, 123, 746, 992 |
| MboII | GAAGA | 7 cut(s) | 130, 166, 200, 317, 458, 875, 973 |
| MfeI | CAATTG | 2 cut(s) | 521, 1041 |
| MflI | RGATCY | 2 cut(s) | 41, 746 |
| MluCI | AATT | 7 cut(s) | 369, 429, 486, 521, 702, 848, 1041 |
| MlyI | GAGTC | 4 cut(s) | 306, 569, 587, 725 |
| Mph1103I | ATGCAT | 2 cut(s) | 163, 901 |
| MroXI | GAANNNNTTC | 1 cut(s) | 239 |
| MseI | TTAA | 6 cut(s) | 224, 360, 372, 507, 846, 894 |
| MslI | CAYNNNNRTG | 2 cut(s) | 536, 793 |
| MspI | CCGG | 3 cut(s) | 38, 45, 920 |
| MspR9I | CCNGG | 4 cut(s) | 39, 46, 579, 921 |
| MunI | CAATTG | 2 cut(s) | 521, 1041 |
| Mva1269I | GAATGC | 2 cut(s) | 163, 800 |
| MvaI | CCWGG | 1 cut(s) | 579 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 809 |
| NciI | CCSGG | 3 cut(s) | 39, 46, 921 |
| NdeII | GATC | 4 cut(s) | 41, 123, 746, 992 |
| NlaIII | CATG | 1 cut(s) | 403 |
| NlaIV | GGNNCC | 2 cut(s) | 43, 645 |
| NmuCI | GTSAC | 2 cut(s) | 94, 783 |
| NsiI | ATGCAT | 2 cut(s) | 163, 901 |
| PctI | GAATGC | 2 cut(s) | 163, 800 |
| PdmI | GAANNNNTTC | 1 cut(s) | 239 |
| PfeI | GAWTC | 2 cut(s) | 25, 389 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 266, 400 |
| PfoI | TCCNGGA | 1 cut(s) | 919 |
| PkrI | GCNGC | 2 cut(s) | 136, 814 |
| PleI | GAGTC | 4 cut(s) | 305, 568, 587, 725 |
| PpsI | GAGTC | 4 cut(s) | 305, 568, 587, 725 |
| PshAI | GACNNNNGTC | 1 cut(s) | 781 |
| Psp6I | CCWGG | 1 cut(s) | 577 |
| PspFI | CCCAGC | 1 cut(s) | 333 |
| PspGI | CCWGG | 1 cut(s) | 577 |
| PspN4I | GGNNCC | 2 cut(s) | 43, 645 |
| PspPI | GGNCC | 1 cut(s) | 643 |
| PstI | CTGCAG | 1 cut(s) | 754 |
| PsuI | RGATCY | 2 cut(s) | 41, 746 |
| RsaI | GTAC | 1 cut(s) | 57 |
| RsaNI | GTAC | 1 cut(s) | 56 |
| RseI | CAYNNNNRTG | 2 cut(s) | 536, 793 |
| SaqAI | TTAA | 6 cut(s) | 224, 360, 372, 507, 846, 894 |
| SatI | GCNGC | 2 cut(s) | 135, 813 |
| Sau3AI | GATC | 4 cut(s) | 41, 123, 746, 992 |
| Sau96I | GGNCC | 1 cut(s) | 643 |
| SchI | GAGTC | 4 cut(s) | 306, 569, 587, 725 |
| ScrFI | CCNGG | 4 cut(s) | 39, 46, 579, 921 |
| SfaNI | GCATC | 1 cut(s) | 856 |
| SfcI | CTRYAG | 2 cut(s) | 138, 750 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 536, 793 |
| Sse9I | AATT | 7 cut(s) | 369, 429, 486, 521, 702, 848, 1041 |
| SsiI | CCGC | 1 cut(s) | 744 |
| SspMI | CTAG | 3 cut(s) | 29, 618, 726 |
| StyD4I | CCNGG | 4 cut(s) | 37, 44, 577, 919 |
| TaiI | ACGT | 2 cut(s) | 577, 1031 |
| TasI | AATT | 7 cut(s) | 369, 429, 486, 521, 702, 848, 1041 |
| TfiI | GAWTC | 2 cut(s) | 25, 389 |
| Tru1I | TTAA | 6 cut(s) | 224, 360, 372, 507, 846, 894 |
| Tru9I | TTAA | 6 cut(s) | 224, 360, 372, 507, 846, 894 |
| TscAI | CASTG | 1 cut(s) | 507 |
| TseFI | GTSAC | 2 cut(s) | 94, 783 |
| TseI | GCWGC | 2 cut(s) | 134, 812 |
| Tsp45I | GTSAC | 2 cut(s) | 94, 783 |
| TspDTI | ATGAA | 2 cut(s) | 232, 812 |
| TspGWI | ACGGA | 1 cut(s) | 875 |
| TspRI | CASTG | 1 cut(s) | 507 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 266, 400 |
| XapI | RAATTY | 1 cut(s) | 702 |
| XmnI | GAANNNNTTC | 1 cut(s) | 239 |
| XspI | CTAG | 3 cut(s) | 29, 618, 726 |
| Zsp2I | ATGCAT | 2 cut(s) | 163, 901 |