Rroxscaffold_5G00366740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000100
Physical Location & Seq
Reverse (-)
48684837 .. 48687246
2410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366740.1

Sequence Viewer

Length: 702 bp
ATGGAGGAGGATAGAGAGGAATCAGAATCGGAGGAAGAGGATAATAGATTAGATGAAGCAAAGACAGTTCCGGAAGAAGAGGATCAGAATTGTGAAAATGAAGAAGATAACCTACAAGTTCGGGTGGTTGAACGGGAAAAAAATTCAGAAAAAAACAAGTGGGAGAAAGAGCTTCAGCAAAAGGAGGAGGAGATAAGATATATGACTGTGGAGAAAGATAATTTGAAGAAAAAACTGAACGAAAAGGAACAGGAACTAAGGATAATCAAGGAGGACATGGTGAATGCGGAGGAACGAAATGCTACACTTGTGACCGAGAATTTCTGCCTTGCATCATCTGTGAAGGAGTTAGAGATAAAATTGAAAGAATTGGAGCAAATGTTGAGCACAAAGACTCACACCTCAACGGCGGCTCAGCGGCACGGCTCCCCGCCACCTCACCGCACGGTTAACATGGTAGAACTTTGGATGACGACGAGTCAAAGAACGAGCGAGATGACATCTTTGGAACAGGATGCGAGAATGAAATTTGATGAAAAGAACAGTTCGGAAGAGGAACTGAAAATGATGGAAGTTCAATTGAGTGAAACAGAGAGAGAAAGCATAAAGTGGATCAAGGATAACTATAAACGAAAAATGGCAGTGACGAACTCAAAGACAACCCTCGGGAAGGAGAAGATTCGTAAGTACACAGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

27.65

Weight (kDa)

4.91

Isoelectric Point (pI)

61.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 5 cut(s) 287, 410, 418, 431, 442
AclWI GGATC 2 cut(s) 90, 620
AcsI RAATTY 3 cut(s) 142, 319, 527
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 689
AfiI CCNNNNNNNGG 1 cut(s) 670
AgsI TTSAA 4 cut(s) 131, 226, 364, 578
AhdI GACNNNNNGTC 1 cut(s) 477
AluBI AGCT 2 cut(s) 172, 695
AluI AGCT 2 cut(s) 172, 695
Alw21I GWGCWC 1 cut(s) 389
AlwI GGATC 2 cut(s) 90, 620
Ama87I CYCGRG 1 cut(s) 665
Aor13HI TCCGGA 1 cut(s) 70
ApoI RAATTY 3 cut(s) 142, 319, 527
AsuHPI GGTGA 2 cut(s) 292, 431
AvaI CYCGRG 1 cut(s) 665
BarI GAAGNNNNNNTAC 2 cut(s) 96, 128
Bbv12I GWGCWC 1 cut(s) 389
BccI CCATC 1 cut(s) 562
BceAI ACGGC 2 cut(s) 423, 439
BisI GCNGC 2 cut(s) 411, 419
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 2 cut(s) 412, 420
BmeRI GACNNNNNGTC 1 cut(s) 477
BmeT110I CYCGRG 1 cut(s) 665
BmiI GGNNCC 1 cut(s) 427
BmsI GCATC 2 cut(s) 341, 505
Bpu1102I GCTNAGC 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 664
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 1 cut(s) 670
BseAI TCCGGA 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 664
BseGI GGATG 2 cut(s) 474, 520
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMII CTCAG 1 cut(s) 428
BseRI GAGGAG 3 cut(s) 20, 200, 203
BsiHKAI GWGCWC 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 665
BsiSI CCGG 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 670
BsmI GAATGC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 665
Bsp1286I GDGCHC 1 cut(s) 389
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 2 cut(s) 82, 612
Bsp1720I GCTNAGC 1 cut(s) 414
BspACI CCGC 5 cut(s) 287, 410, 418, 431, 442
BspCNI CTCAG 1 cut(s) 427
BspEI TCCGGA 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 427
BspPI GGATC 2 cut(s) 90, 620
BssECI CCNNGG 1 cut(s) 664
BssMI GATC 2 cut(s) 82, 612
Bst4CI ACNGT 4 cut(s) 67, 208, 448, 545
Bst6I CTCTTC 3 cut(s) 30, 72, 546
BstDEI CTNAG 2 cut(s) 257, 414
BstENI CCTNNNNNAGG 1 cut(s) 668
BstF5I GGATG 2 cut(s) 474, 520
BstKTI GATC 2 cut(s) 85, 615
BstMBI GATC 2 cut(s) 82, 612
BtsCI GGATG 2 cut(s) 474, 520
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 1 cut(s) 648
Csp6I GTAC 1 cut(s) 688
CviAII CATG 2 cut(s) 277, 454
CviJI RGCY 4 cut(s) 172, 413, 426, 695
CviKI_1 RGCY 4 cut(s) 172, 413, 426, 695
CviQI GTAC 1 cut(s) 688
DdeI CTNAG 2 cut(s) 257, 414
DpnI GATC 2 cut(s) 84, 614
DpnII GATC 2 cut(s) 82, 612
DriI GACNNNNNGTC 1 cut(s) 477
Eam1104I CTCTTC 3 cut(s) 30, 72, 546
Eam1105I GACNNNNNGTC 1 cut(s) 477
EarI CTCTTC 3 cut(s) 30, 72, 546
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 665
EcoNI CCTNNNNNAGG 1 cut(s) 668
FaeI CATG 2 cut(s) 280, 457
FaiI YATR 6 cut(s) 201, 203, 278, 455, 605, 627
FatI CATG 2 cut(s) 276, 453
FauI CCCGC 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 411, 419
FokI GGATG 2 cut(s) 481, 527
Fsp4HI GCNGC 2 cut(s) 411, 419
GluI GCNGC 2 cut(s) 411, 419
HapII CCGG 1 cut(s) 71
Hin1II CATG 2 cut(s) 280, 457
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 5 cut(s) 20, 26, 394, 478, 679
HpaI GTTAAC 1 cut(s) 451
HpaII CCGG 1 cut(s) 71
HphI GGTGA 2 cut(s) 292, 431
Hpy166II GTNNAC 2 cut(s) 451, 690
Hpy188I TCNGA 5 cut(s) 25, 31, 87, 148, 550
Hpy188III TCNNGA 2 cut(s) 71, 667
Hpy8I GTNNAC 2 cut(s) 451, 690
Hpy99I CGWCG 1 cut(s) 478
HpyAV CCTTC 2 cut(s) 337, 664
HpyCH4III ACNGT 4 cut(s) 67, 208, 448, 545
HpyCH4V TGCA 1 cut(s) 332
HpyF3I CTNAG 2 cut(s) 257, 414
Hsp92II CATG 2 cut(s) 280, 457
Kpn2I TCCGGA 1 cut(s) 70
KspAI GTTAAC 1 cut(s) 451
Kzo9I GATC 2 cut(s) 82, 612
LmnI GCTCC 2 cut(s) 373, 431
LpnPI CCDG 3 cut(s) 84, 236, 497
LweI GCATC 2 cut(s) 341, 505
MaeIII GTNAC 2 cut(s) 310, 643
MalI GATC 2 cut(s) 84, 614
MboI GATC 2 cut(s) 82, 612
MboII GAAGA 8 cut(s) 47, 86, 89, 113, 116, 238, 563, 688
MfeI CAATTG 1 cut(s) 578
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 8 cut(s) 88, 142, 220, 319, 359, 368, 527, 578
MlyI GAGTC 2 cut(s) 388, 487
MroI TCCGGA 1 cut(s) 70
MseI TTAA 2 cut(s) 450, 700
MspA1I CMGCKG 1 cut(s) 418
MspI CCGG 1 cut(s) 71
MunI CAATTG 1 cut(s) 578
Mva1269I GAATGC 1 cut(s) 289
NdeII GATC 2 cut(s) 82, 612
NlaIII CATG 2 cut(s) 280, 457
NlaIV GGNNCC 1 cut(s) 427
NmuCI GTSAC 2 cut(s) 310, 643
PctI GAATGC 1 cut(s) 289
PfeI GAWTC 3 cut(s) 20, 26, 679
PkrI GCNGC 2 cut(s) 412, 420
PleI GAGTC 2 cut(s) 388, 486
PpsI GAGTC 2 cut(s) 388, 486
PspN4I GGNNCC 1 cut(s) 427
RsaI GTAC 1 cut(s) 689
RsaNI GTAC 1 cut(s) 688
SaqAI TTAA 2 cut(s) 450, 700
SatI GCNGC 2 cut(s) 411, 419
Sau3AI GATC 2 cut(s) 82, 612
SchI GAGTC 2 cut(s) 388, 487
SduI GDGCHC 1 cut(s) 389
SetI ASST 5 cut(s) 114, 174, 404, 439, 697
SfaNI GCATC 2 cut(s) 341, 505
Sse9I AATT 8 cut(s) 88, 142, 220, 319, 359, 368, 527, 578
SsiI CCGC 5 cut(s) 287, 410, 418, 431, 442
TaaI ACNGT 4 cut(s) 67, 208, 448, 545
TaqII GACCGA 1 cut(s) 329
TasI AATT 8 cut(s) 88, 142, 220, 319, 359, 368, 527, 578
TatI WGTACW 1 cut(s) 687
TauI GCSGC 2 cut(s) 413, 421
TfiI GAWTC 3 cut(s) 20, 26, 679
Tru1I TTAA 2 cut(s) 450, 700
Tru9I TTAA 2 cut(s) 450, 700
TscAI CASTG 1 cut(s) 648
TseFI GTSAC 2 cut(s) 310, 643
Tsp45I GTSAC 2 cut(s) 310, 643
TspDTI ATGAA 4 cut(s) 69, 114, 539, 549
TspRI CASTG 1 cut(s) 648
XagI CCTNNNNNAGG 1 cut(s) 668
XapI RAATTY 3 cut(s) 142, 319, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.