Rmu_sc0005446.1_g000019

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005446.1
OG0000100
Physical Location & Seq
Reverse (-)
68563 .. 69207
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005446.1_g000019.1.cds

Sequence Viewer

Length: 645 bp
atgaaacatatagaagattcagacacaaaagaagaaccatcaccaaagaagggttcgaagaagcatttaaaagtaaaaagcaaaaaacagaaagtaaagcaagtagaagattctgaagaggaagcagaagtagaagaaaaacctgaagctgcgccaaagaggaagagacatgtaaaaccaggacaagcacaatacaggtgcacattaataagtttcttgaacacaattaaagataacaagaaaaatctgactccaagaacattagatttgctcaggcaaacaccatttggaaaaattgtcgatgcattccatggtggctacatagaggagaagacaaccatgaaatctgatgatttcattaccctcccactgcaggcctacaaccatgaaaatgacctcttcttctttggaaagaagaaattcaggatctcgacaacagatatttcaaagatcctagggctaccagcaaaaggtgagttggtaccaaaaacttctgaaggtgcacatcagtccgaatttgtcgagaagttttttccaaagaaagcgagaattaacaaaaagctgtggagaaagctctacaagatgccatcaaagaaaagccaccaacagaggaagggattgagaagaaggacaaaaatgtggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

214

Amino Acids

24.99

Weight (kDa)

9.98

Isoelectric Point (pI)

59.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 481
AccB1I GGYRCC 1 cut(s) 481
AclWI GGATC 2 cut(s) 434, 445
AcsI RAATTY 2 cut(s) 419, 515
AcuI CTGAAG 3 cut(s) 135, 165, 516
AfaI GTAC 1 cut(s) 483
AfiI CCNNNNNNNGG 3 cut(s) 50, 373, 470
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 2 cut(s) 220, 447
AjnI CCWGG 1 cut(s) 178
AjuI GAANNNNNNNTTGG 2 cut(s) 37, 69
AluBI AGCT 3 cut(s) 149, 562, 574
AluI AGCT 3 cut(s) 149, 562, 574
Alw21I GWGCWC 2 cut(s) 203, 505
Alw26I GTCTC 1 cut(s) 160
Alw44I GTGCAC 2 cut(s) 199, 501
AlwI GGATC 2 cut(s) 434, 445
AoxI GGCC 1 cut(s) 375
ApaLI GTGCAC 2 cut(s) 199, 501
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 2 cut(s) 419, 515
AseI ATTAAT 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 419
Asp718I GGTACC 1 cut(s) 481
AspA2I CCTAGG 1 cut(s) 454
AspLEI GCGC 1 cut(s) 154
AsuHPI GGTGA 2 cut(s) 33, 485
AsuII TTCGAA 1 cut(s) 56
AvrII CCTAGG 1 cut(s) 454
BaeGI GKGCMC 2 cut(s) 203, 505
BanI GGYRCC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 338
Bbv12I GWGCWC 2 cut(s) 203, 505
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 46, 595
BciT130I CCWGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 1 cut(s) 371
BisI GCNGC 1 cut(s) 150
BlnI CCTAGG 1 cut(s) 454
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 2 cut(s) 292, 573
BpiI GAAGAC 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 310, 454
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 373, 470
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 310, 454
BseLI CCNNNNNNNGG 3 cut(s) 50, 373, 470
BseMII CTCAG 1 cut(s) 286
BseRI GAGGAG 1 cut(s) 341
BseSI GKGCMC 2 cut(s) 203, 505
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 377
BshNI GGYRCC 1 cut(s) 481
BsiHKAI GWGCWC 2 cut(s) 203, 505
BslI CCNNNNNNNGG 3 cut(s) 50, 373, 470
BsmAI GTCTC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 1 cut(s) 377
Bsp119I TTCGAA 1 cut(s) 56
Bsp1286I GDGCHC 2 cut(s) 203, 505
Bsp143I GATC 2 cut(s) 426, 450
Bsp19I CCATGG 1 cut(s) 310
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 483
BspMAI CTGCAG 1 cut(s) 375
BspPI GGATC 2 cut(s) 434, 445
BspT104I TTCGAA 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 481
BssECI CCNNGG 2 cut(s) 310, 454
BssMI GATC 2 cut(s) 426, 450
BssT1I CCWWGG 2 cut(s) 310, 454
Bst2UI CCWGG 1 cut(s) 180
Bst6I CTCTTC 3 cut(s) 111, 158, 404
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 1 cut(s) 272
BstDSI CCRYGG 1 cut(s) 310
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 2 cut(s) 429, 453
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 2 cut(s) 426, 450
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 371
BstSLI GKGCMC 2 cut(s) 203, 505
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 2 cut(s) 426, 450
BstYI RGATCY 2 cut(s) 426, 450
BsuRI GGCC 1 cut(s) 377
BtgI CCRYGG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 375
CfoI GCGC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 482
CviAII CATG 4 cut(s) 170, 311, 340, 386
CviJI RGCY 7 cut(s) 149, 318, 377, 460, 562, 574, 600
CviKI_1 RGCY 7 cut(s) 149, 318, 377, 460, 562, 574, 600
CviQI GTAC 1 cut(s) 482
DdeI CTNAG 1 cut(s) 272
DpnI GATC 2 cut(s) 428, 452
DpnII GATC 2 cut(s) 426, 450
DraI TTTAAA 1 cut(s) 69
Eam1104I CTCTTC 3 cut(s) 111, 158, 404
EarI CTCTTC 3 cut(s) 111, 158, 404
Eco130I CCWWGG 2 cut(s) 310, 454
Eco147I AGGCCT 1 cut(s) 377
Eco57I CTGAAG 3 cut(s) 135, 165, 516
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 2 cut(s) 310, 454
EcoT22I ATGCAT 1 cut(s) 307
ErhI CCWWGG 2 cut(s) 310, 454
FaeI CATG 4 cut(s) 173, 314, 343, 389
FaiI YATR 7 cut(s) 9, 11, 171, 312, 323, 341, 387
FatI CATG 4 cut(s) 169, 310, 339, 385
Fnu4HI GCNGC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 455
GlaI GCGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 377
HhaI GCGC 1 cut(s) 154
Hin1II CATG 4 cut(s) 173, 314, 343, 389
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 3 cut(s) 17, 110, 250
HphI GGTGA 2 cut(s) 33, 485
Hpy166II GTNNAC 2 cut(s) 201, 503
Hpy188I TCNGA 6 cut(s) 22, 115, 249, 349, 496, 514
Hpy188III TCNNGA 4 cut(s) 217, 424, 430, 523
Hpy8I GTNNAC 2 cut(s) 201, 503
HpyAV CCTTC 4 cut(s) 43, 491, 607, 621
HpyCH4V TGCA 4 cut(s) 201, 305, 373, 503
HpyF3I CTNAG 1 cut(s) 272
Hsp92II CATG 4 cut(s) 173, 314, 343, 389
HspAI GCGC 1 cut(s) 152
KpnI GGTACC 1 cut(s) 485
Kzo9I GATC 2 cut(s) 426, 450
LpnPI CCDG 8 cut(s) 156, 165, 181, 192, 259, 359, 409, 477
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 2 cut(s) 292, 573
MaeI CTAG 1 cut(s) 455
MalI GATC 2 cut(s) 428, 452
MboI GATC 2 cut(s) 426, 450
MflI RGATCY 2 cut(s) 426, 450
MhlI GDGCHC 2 cut(s) 203, 505
MluCI AATT 5 cut(s) 225, 294, 419, 515, 549
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 6 cut(s) 112, 153, 319, 374, 407, 603
Mph1103I ATGCAT 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 4 cut(s) 68, 206, 228, 552
MslI CAYNNNNRTG 1 cut(s) 390
MspR9I CCNGG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 305
MvaI CCWGG 1 cut(s) 180
NcoI CCATGG 1 cut(s) 310
NdeII GATC 2 cut(s) 426, 450
NlaIII CATG 4 cut(s) 173, 314, 343, 389
NlaIV GGNNCC 1 cut(s) 483
NsiI ATGCAT 1 cut(s) 307
NspI RCATGY 1 cut(s) 173
NspV TTCGAA 1 cut(s) 56
PceI AGGCCT 1 cut(s) 377
PciI ACATGT 1 cut(s) 169
PctI GAATGC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 2 cut(s) 17, 110
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PscI ACATGT 1 cut(s) 169
PshBI ATTAAT 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 483
PstI CTGCAG 1 cut(s) 375
PsuI RGATCY 2 cut(s) 426, 450
RsaI GTAC 1 cut(s) 483
RsaNI GTAC 1 cut(s) 482
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 4 cut(s) 68, 206, 228, 552
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 2 cut(s) 426, 450
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 2 cut(s) 203, 505
SetI ASST 8 cut(s) 145, 151, 200, 399, 475, 502, 564, 576
SfaNI GCATC 2 cut(s) 292, 573
SfcI CTRYAG 1 cut(s) 371
SfuI TTCGAA 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 390
Sse9I AATT 5 cut(s) 225, 294, 419, 515, 549
SseBI AGGCCT 1 cut(s) 377
SspMI CTAG 1 cut(s) 455
StuI AGGCCT 1 cut(s) 377
StyD4I CCNGG 1 cut(s) 178
StyI CCWWGG 2 cut(s) 310, 454
TaqI TCGA 4 cut(s) 56, 300, 431, 522
TasI AATT 5 cut(s) 225, 294, 419, 515, 549
TfiI GAWTC 2 cut(s) 17, 110
Tru1I TTAA 4 cut(s) 68, 206, 228, 552
Tru9I TTAA 4 cut(s) 68, 206, 228, 552
TscAI CASTG 1 cut(s) 375
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 4 cut(s) 17, 346, 356, 402
TspRI CASTG 1 cut(s) 375
VneI GTGCAC 2 cut(s) 199, 501
VspI ATTAAT 1 cut(s) 206
XapI RAATTY 2 cut(s) 419, 515
XceI RCATGY 1 cut(s) 173
XmaJI CCTAGG 1 cut(s) 454
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 1 cut(s) 455
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.