Rmu_sc0011497.1_g000008

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011497.1
OG0000100
Physical Location & Seq
Forward (+)
32253 .. 34021
1769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011497.1_g000008.1.cds

Sequence Viewer

Length: 876 bp
atggataaaaagaagaaaagtggaaagcagaaaagaagaaacatggaagaaactgaagatgaagaagaatctggtgaagaagaagttcttgccaggcagaagaagaaaatggataaaaagaagacaaaaaaagaaagtagaaagaagaaggaagaaactgacgaggaagaagatacaaaggatgacgaagaggaaagagtgccaccgaaaaggaaaagatatttaaaagaaggagtgctaaggtccggcttatcagtaccaaagaccaaagaaggggcatatagctctgagttcttgactaattactttgataaaaagcaaaggatcaacaaggctactgcagagcaagattttaagaatgcattggcagaaactccagaaacagcggaagaaaaaaagaaacgggacagaaatgttgccgtattagtactcttgaaccttttcatcaaactcctgttcccaaactctgaaggaacaatatcttgggactatgtaagagtctgtgaagaggtggaaagtctgggaaaatatagctgggcaaaggaagttggcgacttccttaaaaaatcaattaaaagaaagccaaaagaatcccaaaacatggcaggttgcgtgatattggtgatgaaaatctttaaaaaagttaaagaagatgcagaggaagatgattttgagtctaatacagacacagaaagtcaagaaaaacataatgttgggcaagaagaaaatgttgaaaagaaaaccagtggaaacatggagaaggagactgcatggaatgatatacagaagatagaattagagacaaatcttcagaaaaaggaagaagagctaagagaggtggaaatagagaaaaagggcctggaagaaaaaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

291

Amino Acids

34.11

Weight (kDa)

5.82

Isoelectric Point (pI)

58.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000100)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0248691
rosa_multiflora Rmu_co8124940.1_g000001 Rmu_co8378695.1_g000001 Rmu_sc0000023.1_g000005 Rmu_sc0000149.1_g000044 Rmu_sc0000195.1_g000019 Rmu_sc0000270.1_g000002 Rmu_sc0000270.1_g000003 Rmu_sc0000433.1_g000016 Rmu_sc0000493.1_g000067 Rmu_sc0000493.1_g000069 Rmu_sc0000493.1_g000070 Rmu_sc0000493.1_g000071 Rmu_sc0000532.1_g000015 Rmu_sc0000532.1_g000017 Rmu_sc0000552.1_g000004 Rmu_sc0000692.1_g000012 Rmu_sc0000733.1_g000017 Rmu_sc0000738.1_g000026 Rmu_sc0000738.1_g000027 Rmu_sc0000738.1_g000028 Rmu_sc0000738.1_g000030 Rmu_sc0000806.1_g000006 Rmu_sc0000863.1_g000026 Rmu_sc0000863.1_g000027 Rmu_sc0000863.1_g000028 Rmu_sc0000863.1_g000029 Rmu_sc0000863.1_g000030 Rmu_sc0000885.1_g000001 Rmu_sc0001168.1_g000020 Rmu_sc0001168.1_g000021 Rmu_sc0001214.1_g000031 Rmu_sc0001214.1_g000032 Rmu_sc0001239.1_g000003 Rmu_sc0001355.1_g000003 Rmu_sc0001373.1_g000008 Rmu_sc0001373.1_g000009 Rmu_sc0001373.1_g000010 Rmu_sc0001587.1_g000003 Rmu_sc0001648.1_g000020 Rmu_sc0001648.1_g000021 Rmu_sc0001648.1_g000022 Rmu_sc0001648.1_g000023 Rmu_sc0001836.1_g000052 Rmu_sc0001836.1_g000053 Rmu_sc0001913.1_g000025 Rmu_sc0001913.1_g000030 Rmu_sc0001938.1_g000005 Rmu_sc0001938.1_g000007 Rmu_sc0001977.1_g000016 Rmu_sc0001977.1_g000017 Rmu_sc0001977.1_g000018 Rmu_sc0001977.1_g000019 Rmu_sc0002080.1_g000031 Rmu_sc0002095.1_g000011 Rmu_sc0002095.1_g000012 Rmu_sc0002202.1_g000002 Rmu_sc0002202.1_g000004 Rmu_sc0002765.1_g000012 Rmu_sc0002955.1_g000003 Rmu_sc0002983.1_g000001 Rmu_sc0002983.1_g000002 Rmu_sc0002983.1_g000005 Rmu_sc0002983.1_g000006 Rmu_sc0003832.1_g000010 Rmu_sc0003880.1_g000041 Rmu_sc0003880.1_g000043 Rmu_sc0003981.1_g000011 Rmu_sc0003981.1_g000016 Rmu_sc0004118.1_g000013 Rmu_sc0004125.1_g000008 Rmu_sc0004155.1_g000007 Rmu_sc0004155.1_g000008 Rmu_sc0004155.1_g000009 Rmu_sc0004465.1_g000004 Rmu_sc0004465.1_g000005 Rmu_sc0004755.1_g000030 Rmu_sc0005014.1_g000009 Rmu_sc0005023.1_g000027 Rmu_sc0005446.1_g000019 Rmu_sc0006273.1_g000001 Rmu_sc0006948.1_g000020 Rmu_sc0007412.1_g000005 Rmu_sc0007996.1_g000001 Rmu_sc0009749.1_g000002 Rmu_sc0011497.1_g000008 Rmu_sc0011497.1_g000009 Rmu_sc0011497.1_g000010 Rmu_sc0012018.1_g000001 Rmu_sc0012347.1_g000004 Rmu_sc0012347.1_g000005 Rmu_sc0013290.1_g000001 Rmu_sc0013576.1_g000009 Rmu_sc0013576.1_g000011 Rmu_sc0014354.1_g000001 Rmu_sc0014482.1_g000006 Rmu_sc0016848.1_g000001 Rmu_sc0018723.1_g000002 Rmu_sc0018723.1_g000003 Rmu_sc0020085.1_g000001 Rmu_sc0022367.1_g000001 Rmu_sc0023661.1_g000001 Rmu_sc0030814.1_g000001 Rmu_sc0034982.1_g000001 Rmu_sc0036901.1_g000001 Rmu_ssc0000064.1_g000016 Rmu_ssc0000170.1_g000012 Rmu_ssc0000170.1_g000014 Rmu_ssc0000189.1_g000048 Rmu_ssc0000443.1_g000005
rosa_roxburghii Rroxscaffold_159G00432950 Rroxscaffold_1G00015760 Rroxscaffold_1G00015770 Rroxscaffold_1G00015780 Rroxscaffold_1G00015950 Rroxscaffold_1G00015980 Rroxscaffold_1G00018050 Rroxscaffold_1G00018060 Rroxscaffold_1G00020330 Rroxscaffold_1G00020340 Rroxscaffold_1G00020350 Rroxscaffold_1G00020370 Rroxscaffold_1G00021720 Rroxscaffold_1G00034800 Rroxscaffold_1G00036050 Rroxscaffold_1G00036060 Rroxscaffold_1G00036070 Rroxscaffold_1G00036160 Rroxscaffold_1G00036170 Rroxscaffold_1G00043200 Rroxscaffold_1G00043210 Rroxscaffold_1G00047700 Rroxscaffold_1G00055120 Rroxscaffold_1G00056300 Rroxscaffold_1G00056320 Rroxscaffold_1G00064030 Rroxscaffold_1G00064050 Rroxscaffold_1G00064110 Rroxscaffold_1G00064130 Rroxscaffold_1G00064140 Rroxscaffold_1G00069580 Rroxscaffold_1G00069590 Rroxscaffold_1G00069600 Rroxscaffold_2G00086000 Rroxscaffold_2G00095520 Rroxscaffold_2G00095530 Rroxscaffold_2G00102950 Rroxscaffold_2G00102960 Rroxscaffold_2G00102980 Rroxscaffold_2G00111430 Rroxscaffold_2G00111440 Rroxscaffold_2G00123850 Rroxscaffold_2G00123860 Rroxscaffold_2G00123870 Rroxscaffold_2G00127600 Rroxscaffold_2G00128430 Rroxscaffold_2G00128440 Rroxscaffold_2G00134550 Rroxscaffold_2G00134560 Rroxscaffold_2G00134570 Rroxscaffold_2G00150440 Rroxscaffold_2G00150450 Rroxscaffold_3G00221670 Rroxscaffold_3G00231550 Rroxscaffold_3G00231560 Rroxscaffold_3G00231580 Rroxscaffold_3G00231590 Rroxscaffold_3G00238200 Rroxscaffold_3G00238210 Rroxscaffold_3G00259430 Rroxscaffold_3G00271580 Rroxscaffold_3G00271590 Rroxscaffold_4G00277030 Rroxscaffold_4G00277050 Rroxscaffold_4G00277060 Rroxscaffold_4G00277070 Rroxscaffold_4G00293250 Rroxscaffold_4G00293260 Rroxscaffold_4G00300140 Rroxscaffold_4G00308740 Rroxscaffold_4G00309540 Rroxscaffold_4G00319500 Rroxscaffold_4G00325410 Rroxscaffold_4G00328420 Rroxscaffold_4G00329630 Rroxscaffold_5G00339100 Rroxscaffold_5G00339110 Rroxscaffold_5G00339130 Rroxscaffold_5G00349460 Rroxscaffold_5G00349470 Rroxscaffold_5G00349480 Rroxscaffold_5G00349490 Rroxscaffold_5G00349800 Rroxscaffold_5G00354000 Rroxscaffold_5G00357420 Rroxscaffold_5G00357430 Rroxscaffold_5G00366730 Rroxscaffold_5G00366740 Rroxscaffold_5G00366750 Rroxscaffold_5G00371380 Rroxscaffold_5G00371390 Rroxscaffold_5G00371410 Rroxscaffold_6G00390390 Rroxscaffold_6G00390400 Rroxscaffold_6G00390410 Rroxscaffold_6G00391800 Rroxscaffold_6G00391810 Rroxscaffold_6G00399200 Rroxscaffold_6G00403500 Rroxscaffold_6G00403510 Rroxscaffold_6G00403520 Rroxscaffold_6G00407230 Rroxscaffold_6G00411100 Rroxscaffold_6G00411700 Rroxscaffold_6G00415300 Rroxscaffold_6G00415310 Rroxscaffold_6G00422180 Rroxscaffold_6G00422200 Rroxscaffold_6G00422210 Rroxscaffold_7G00157710 Rroxscaffold_7G00157720 Rroxscaffold_7G00157740 Rroxscaffold_7G00194140 Rroxscaffold_7G00196750 Rroxscaffold_7G00197960 Rroxscaffold_7G00208750 Rroxscaffold_7G00208760 Rroxscaffold_7G00208780 Rroxscaffold_7G00213740 Rroxscaffold_7G00215180 Rroxscaffold_7G00215190 Rroxscaffold_7G00215200
rosa_rugosa Rorug03G0270600 Rorug05G0169200
rosa_samantha Rh1AG048500 Rh1AG091500 Rh1AG190900 Rh2BG351700 Rh2BG494300 Rh2BG539800 Rh3BG209100 Rh4CG136600 Rh4CG194800 Rh4CG381100 Rh5BG080500 Rh5BG083000 Rh5BG083100 Rh5BG124000 Rh5BG126200 Rh5BG131000 Rh5BG158900 Rh5BG284300 Rh5BG310800 Rh5BG437700 Rh6AG114700 Rh6AG126300 Rh6AG202500 Rh7CG009000 Rh7CG320700 Rh7CG355200 Rh7CG514200
rosa_wichuraiana Rw5G018600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 596
AccB7I CCANNNNNTGG 1 cut(s) 601
AciI CCGC 1 cut(s) 386
AclWI GGATC 1 cut(s) 332
AcuI CTGAAG 3 cut(s) 75, 489, 794
AfaI GTAC 2 cut(s) 258, 429
AfiI CCNNNNNNNGG 2 cut(s) 273, 601
AgsI TTSAA 2 cut(s) 436, 734
AjnI CCWGG 2 cut(s) 92, 858
AjuI GAANNNNNNNTTGG 2 cut(s) 466, 498
AluBI AGCT 3 cut(s) 285, 534, 829
AluI AGCT 3 cut(s) 285, 534, 829
Alw26I GTCTC 2 cut(s) 758, 794
AlwI GGATC 1 cut(s) 332
AoxI GGCC 1 cut(s) 856
Asp700I GAANNNNTTC 2 cut(s) 84, 440
AspS9I GGNCC 2 cut(s) 243, 856
AsuHPI GGTGA 2 cut(s) 86, 634
AvaII GGWCC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 404
BciT130I CCWGG 2 cut(s) 94, 860
BcoDI GTCTC 2 cut(s) 758, 794
BfmI CTRYAG 1 cut(s) 339
BfuAI ACCTGC 1 cut(s) 596
BmcAI AGTACT 1 cut(s) 429
Bme1390I CCNGG 2 cut(s) 94, 860
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 2 cut(s) 243, 856
BmrFI CCNGG 2 cut(s) 94, 860
BmsI GCATC 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 629
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 601
Bse1I ACTGG 1 cut(s) 744
Bse8I GATNNNNATC 1 cut(s) 629
BseBI CCWGG 2 cut(s) 94, 860
BseGI GGATG 1 cut(s) 187
BseJI GATNNNNATC 1 cut(s) 629
BseLI CCNNNNNNNGG 2 cut(s) 273, 601
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 744
BseYI CCCAGC 1 cut(s) 534
BshFI GGCC 1 cut(s) 858
BsiSI CCGG 1 cut(s) 246
BslFI GGGAC 2 cut(s) 419, 500
BslI CCNNNNNNNGG 2 cut(s) 273, 601
BsmAI GTCTC 2 cut(s) 758, 794
BsmFI GGGAC 2 cut(s) 419, 500
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 1 cut(s) 858
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 1 cut(s) 386
BspANI GGCC 1 cut(s) 858
BspCNI CTCAG 1 cut(s) 280
BspMAI CTGCAG 1 cut(s) 343
BspMI ACCTGC 1 cut(s) 596
BspPI GGATC 1 cut(s) 332
BspQI GCTCTTC 1 cut(s) 819
BsrI ACTGG 1 cut(s) 744
BssMI GATC 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 94, 860
Bst6I CTCTTC 3 cut(s) 183, 501, 819
BstDEI CTNAG 3 cut(s) 239, 288, 830
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 2 cut(s) 758, 794
BstMBI GATC 1 cut(s) 324
BstNI CCWGG 2 cut(s) 94, 860
BstSCI CCNGG 2 cut(s) 92, 858
BstSFI CTRYAG 1 cut(s) 339
BstV2I GAAGAC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 858
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 751
BveI ACCTGC 1 cut(s) 596
Cfr13I GGNCC 2 cut(s) 243, 856
Csp6I GTAC 2 cut(s) 257, 428
CviAII CATG 4 cut(s) 43, 601, 754, 771
CviJI RGCY 7 cut(s) 249, 285, 335, 534, 583, 829, 858
CviKI_1 RGCY 7 cut(s) 249, 285, 335, 534, 583, 829, 858
CviQI GTAC 2 cut(s) 257, 428
DdeI CTNAG 3 cut(s) 239, 288, 830
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
DraI TTTAAA 2 cut(s) 225, 637
Eam1104I CTCTTC 3 cut(s) 183, 501, 819
EarI CTCTTC 3 cut(s) 183, 501, 819
Eco47I GGWCC 1 cut(s) 243
Eco57I CTGAAG 3 cut(s) 75, 489, 794
EcoO109I RGGNCCY 1 cut(s) 856
EcoRII CCWGG 2 cut(s) 92, 858
EcoT22I ATGCAT 1 cut(s) 364
FaeI CATG 4 cut(s) 46, 604, 757, 774
FalI AAGNNNNNCTT 2 cut(s) 72, 104
FaqI GGGAC 2 cut(s) 419, 500
FatI CATG 4 cut(s) 42, 600, 753, 770
FokI GGATG 1 cut(s) 194
GsaI CCCAGC 1 cut(s) 538
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 1 cut(s) 858
HapII CCGG 1 cut(s) 246
Hin1II CATG 4 cut(s) 46, 604, 757, 774
HinfI GANTC 4 cut(s) 68, 498, 590, 674
HpaII CCGG 1 cut(s) 246
HphI GGTGA 2 cut(s) 86, 634
Hpy188I TCNGA 3 cut(s) 289, 469, 813
Hpy188III TCNNGA 4 cut(s) 295, 377, 433, 698
HpyAV CCTTC 5 cut(s) 142, 224, 266, 464, 754
HpyCH4V TGCA 4 cut(s) 341, 362, 656, 770
HpyF3I CTNAG 3 cut(s) 239, 288, 830
Hsp92II CATG 4 cut(s) 46, 604, 757, 774
Kzo9I GATC 1 cut(s) 324
LguI GCTCTTC 1 cut(s) 819
LweI GCATC 1 cut(s) 643
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MluCI AATT 3 cut(s) 301, 570, 794
MlyI GAGTC 2 cut(s) 507, 683
MnlI CCTC 5 cut(s) 157, 184, 502, 652, 829
Mph1103I ATGCAT 1 cut(s) 364
MroXI GAANNNNTTC 2 cut(s) 84, 440
MseI TTAA 6 cut(s) 224, 354, 561, 573, 636, 645
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 2 cut(s) 94, 860
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 2 cut(s) 94, 860
NdeII GATC 1 cut(s) 324
NlaIII CATG 4 cut(s) 46, 604, 757, 774
NsiI ATGCAT 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 819
PctI GAATGC 1 cut(s) 364
PdmI GAANNNNTTC 2 cut(s) 84, 440
PfeI GAWTC 2 cut(s) 68, 590
PflMI CCANNNNNTGG 1 cut(s) 601
PleI GAGTC 2 cut(s) 506, 682
PpsI GAGTC 2 cut(s) 506, 682
Psp6I CCWGG 2 cut(s) 92, 858
PspFI CCCAGC 1 cut(s) 534
PspGI CCWGG 2 cut(s) 92, 858
PspPI GGNCC 2 cut(s) 243, 856
PstI CTGCAG 1 cut(s) 343
RsaI GTAC 2 cut(s) 258, 429
RsaNI GTAC 2 cut(s) 257, 428
SapI GCTCTTC 1 cut(s) 819
SaqAI TTAA 6 cut(s) 224, 354, 561, 573, 636, 645
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 2 cut(s) 243, 856
ScaI AGTACT 1 cut(s) 429
SchI GAGTC 2 cut(s) 507, 683
ScrFI CCNGG 2 cut(s) 94, 860
SetI ASST 8 cut(s) 245, 287, 441, 513, 536, 610, 831, 840
SfaNI GCATC 1 cut(s) 643
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 243
Sse9I AATT 3 cut(s) 301, 570, 794
SsiI CCGC 1 cut(s) 386
StyD4I CCNGG 2 cut(s) 92, 858
TasI AATT 3 cut(s) 301, 570, 794
TatI WGTACW 1 cut(s) 427
TfiI GAWTC 2 cut(s) 68, 590
Tru1I TTAA 6 cut(s) 224, 354, 561, 573, 636, 645
Tru9I TTAA 6 cut(s) 224, 354, 561, 573, 636, 645
TscAI CASTG 1 cut(s) 751
TspDTI ATGAA 3 cut(s) 75, 433, 641
TspRI CASTG 1 cut(s) 751
Van91I CCANNNNNTGG 1 cut(s) 601
VpaK11BI GGWCC 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 751
XmnI GAANNNNTTC 2 cut(s) 84, 440
ZrmI AGTACT 1 cut(s) 429
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.