FvH4_2g27910

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000124
Physical Location & Seq
Forward (+)
22040919 .. 22043842
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27910.t1

Sequence Viewer

Length: 1986 bp
ATGGTCAACCGAATGTCCAAGGCTAAGAGGGTATTAGTAGGGTATATCGGATTTGGAACTACTATTAACATTGGTTGCTGCCGTGTCGTCCCGTCGATTTTCCAACTGATGGTCGGAAAAATTGACATCGACGAAGGAAGTGTGTGGCTCAACGGTAGGAAGCATTTCGTCAACCACGTTGAGGTTTCACGTGTCCTAGGACTAGAAGACGGTGGTGAGGCTATTCAGTTAGGAGAGGGCATACTCCCTGCAGAGTACGGAGAGATCGTCAGTCCTCTGCTGGACGCGGGTGGGAATATATCATTCGGTAATGTCAGCTGGGTGGTAAGTGATCGACCGGAGGCGGACGCCACTTTCGCAATGGCATACGGGTTGCTGGCCCTAACGTGTTTTATTTGTCCTGGTAACTCGACAGAGATCGACCCAACGATGTTGAAACCCCTCATCGATGTGGACAGAATAAGCTATAAAAACTGGGCCACCTTTGCAATTGAACGACTGTTTAGGGGGATAAGGATGCATAGAGAGACTGGGATACCTGTCGTGGAGGGGAGTGCAATCTTTTTACAGGTGCTTTACTGTGAGTTGCTTGTGGAGAGGGTTGAGGGTACGGAGCGCCGGAGGAATCCATTAATGGCTTGGAATACGGAGGCTATTAGCAACCTCTTAGCCAAAGTGGTTGCAGGTCCGCAAGAGAGAGAGGTGAACAATGAGACGATCGTTTCCGAAGACGATTCGGTTGGGTATCCGCTGCAGCACGCTGTGCACAGAGATATTTTTGATTGCTTGGTTAAGGTCGAGGAAGCGCATAAACAGATGGGTGTCCTGATCAACTTAGCGGGCGAATTCCCAAAGCAAATAGCTATTCTGACCAACCAAGTATTGAAACTGACGGAAGAAGTCTGCAATTTTCGACCACGGTTGAAAGACAATGTGCGGGAATTATATAGAACCGGACGTCTTAATAAGGGAGTAGGATCATGCTCCACGGAGGAGGTTCAAAGGGACATACCACACTACCAGGATTCGATGCCCCAGGGTGCTATGTCAAATTCAAGCAGATTTGTGGAAGGTGTACCGCATATTACGAACATGTGTCCTAGTAACAACAATACACCAAACAATGGTAAGCGATCGGCGGCTGAAGCATTTGGGGACTCTAATGAGGAAGATCAACTTTACATGCGTAAACTAATGGGATGCACAGCGGGGCCGTATGGTGAGGTTGGGTTCCGCGGGCAATATTTCGTAGGTCCATACCAACTAAGATACCGGCTGAGCAAGGAGGAAGGGAGAATTATTGACCTGGTTTTCCTAGGAAGCAAAACGATGACAGGAGAGCAAATGAGGACACAACTGGCATCCTGTGGGAATGGGGCAGAAGAGCTTATACGCATAGACGCATGTACCCTGCATCCGGGCTGTTATGTTGGCTCTGCGAAAAGAGCTACTGCTAAGGGAAAGGACGAGTCATATGAGGAATGGGTTAAGGACACAAGAGTCGTGTGTAGGCTGGACAGGTTTGATGGTCAGCTTGCAACATGTGAAAAGATATTCATCCCTGTGCATGAAGGCAACGATCTTGATGGCCACTGGATTTTGTTAGTGGTTTATGTCAAGAGGGGGATCACTGAACTATGGGACAGTGCAGGGGGTGCCCGATTGACGGACGGCCGACATGCAATGATACAACAAGTGTTGGAACACGTTGACCGTGTCACAATTCAGGAATGCATGACGGGGAACTCCGGAAAGAGGAGATGGATTTCGAAAGGTGCTATTGTGGAACCGCTGCATGTGCCGAAGCAGGCGAATCGATTCGATTGTGGAGTCTATGTGATGGGGAACATGATCTATTTTGGGAAAAACTGGGCAAACCAGTTTAACTCTGATGAGTTTCGATCAGAAATTCTGCTGGAATGTCTAAGGGCACCTAACAACGAGTTGCATGAAGTAATACAAGCAACCGTGCGTACTGATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3 Peptidase_C48

Protein Analysis

662

Amino Acids

73.85

Weight (kDa)

5.79

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 489 - 627 3.1e-12 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1499
AatII GACGTC 1 cut(s) 961
Acc36I ACCTGC 1 cut(s) 674
AccB1I GGYRCC 2 cut(s) 1655, 1930
AccB7I CCANNNNNTGG 2 cut(s) 109, 1124
AccII CGCG 2 cut(s) 287, 1236
AccIII TCCGGA 1 cut(s) 1748
AclWI GGATC 2 cut(s) 985, 1634
AcoI YGGCCR 2 cut(s) 1588, 1672
AcsI RAATTY 3 cut(s) 845, 1051, 1908
AcuI CTGAAG 1 cut(s) 1164
AcvI CACGTG 1 cut(s) 191
AcyI GRCGYC 2 cut(s) 348, 958
AdeI CACNNNGTG 1 cut(s) 763
AfaI GTAC 5 cut(s) 257, 610, 1077, 1408, 1975
AfiI CCNNNNNNNGG 6 cut(s) 109, 181, 1124, 1417, 1666, 1755
AflIII ACRYGT 5 cut(s) 190, 386, 1092, 1541, 1705
AgsI TTSAA 6 cut(s) 436, 494, 886, 925, 1001, 1056
AjnI CCWGG 4 cut(s) 400, 1020, 1035, 1305
AluBI AGCT 6 cut(s) 318, 465, 863, 1387, 1448, 1534
AluI AGCT 6 cut(s) 318, 465, 863, 1387, 1448, 1534
Alw21I GWGCWC 1 cut(s) 768
Alw26I GTCTC 2 cut(s) 521, 707
Alw44I GTGCAC 1 cut(s) 764
AlwI GGATC 2 cut(s) 985, 1634
Aor13HI TCCGGA 1 cut(s) 1748
AoxI GGCC 5 cut(s) 378, 477, 1211, 1588, 1672
ApaLI GTGCAC 1 cut(s) 764
ApeKI GCWGC 4 cut(s) 78, 751, 754, 1792
ApoI RAATTY 3 cut(s) 845, 1051, 1908
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AseI ATTAAT 1 cut(s) 632
Asp700I GAANNNNTTC 2 cut(s) 164, 1817
AspA2I CCTAGG 2 cut(s) 196, 1315
AspLEI GCGC 2 cut(s) 618, 808
AspS9I GGNCC 5 cut(s) 379, 477, 686, 1211, 1253
AsuC2I CCSGG 1 cut(s) 1419
AsuHPI GGTGA 3 cut(s) 227, 715, 1232
AsuII TTCGAA 1 cut(s) 1769
AvaII GGWCC 2 cut(s) 686, 1253
AvrII CCTAGG 2 cut(s) 196, 1315
BaeGI GKGCMC 3 cut(s) 768, 1660, 1933
BaeI ACNNNNGTAYC 2 cut(s) 1390, 1423
BalI TGGCCA 1 cut(s) 1590
BanI GGYRCC 2 cut(s) 1655, 1930
BarI GAAGNNNNNNTAC 2 cut(s) 1374, 1406
BbrPI CACGTG 1 cut(s) 191
BbsI GAAGAC 2 cut(s) 213, 735
Bbv12I GWGCWC 1 cut(s) 768
BbvI GCAGC 4 cut(s) 65, 738, 766, 1779
BccI CCATC 6 cut(s) 103, 811, 1520, 1580, 1755, 1834
BceAI ACGGC 3 cut(s) 66, 1198, 1687
BcgI CGANNNNNNTGC 2 cut(s) 1796, 1830
BciT130I CCWGG 4 cut(s) 402, 1022, 1037, 1307
BciVI GTATCC 2 cut(s) 528, 756
BclI TGATCA 1 cut(s) 828
BcnI CCSGG 1 cut(s) 1419
BcoDI GTCTC 2 cut(s) 521, 707
BfaI CTAG 4 cut(s) 197, 203, 1101, 1316
BfmI CTRYAG 2 cut(s) 249, 752
BfoI RGCGCY 1 cut(s) 619
BfuAI ACCTGC 1 cut(s) 674
BfuI GTATCC 2 cut(s) 528, 756
BisI GCNGC 5 cut(s) 79, 752, 755, 1140, 1793
BlnI CCTAGG 2 cut(s) 196, 1315
BlpI GCTNAGC 1 cut(s) 1277
BlsI GCNGC 5 cut(s) 80, 753, 756, 1141, 1794
Bme1390I CCNGG 5 cut(s) 402, 1022, 1037, 1307, 1419
Bme18I GGWCC 2 cut(s) 686, 1253
BmgT120I GGNCC 5 cut(s) 379, 477, 686, 1211, 1253
BmiI GGNNCC 5 cut(s) 1212, 1232, 1657, 1788, 1932
BmrFI CCNGG 5 cut(s) 402, 1022, 1037, 1307, 1419
BmrI ACTGGG 3 cut(s) 484, 540, 1879
BmsI GCATC 5 cut(s) 507, 1020, 1190, 1370, 1423
BmuI ACTGGG 3 cut(s) 484, 540, 1879
BpiI GAAGAC 2 cut(s) 213, 735
Bpu10I CCTNAGC 1 cut(s) 1455
Bpu1102I GCTNAGC 1 cut(s) 1277
Bpu14I TTCGAA 1 cut(s) 1769
BpuMI CCSGG 1 cut(s) 1419
Bsa29I ATCGAT 2 cut(s) 447, 1816
BsaAI YACGTR 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 1556
BsaHI GRCGYC 2 cut(s) 348, 958
BsaJI CCNNGG 8 cut(s) 18, 196, 917, 987, 1035, 1036, 1234, 1315
BsaWI WCCGGW 3 cut(s) 337, 953, 1748
BsaXI ACNNNNNCTCC 4 cut(s) 252, 282, 1821, 1851
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 181, 1124, 1417, 1666, 1755
Bse118I RCCGGY 1 cut(s) 1272
Bse1I ACTGG 6 cut(s) 479, 535, 1362, 1598, 1874, 1879
Bse3DI GCAATG 2 cut(s) 366, 1689
Bse8I GATNNNNATC 1 cut(s) 1556
BseAI TCCGGA 1 cut(s) 1748
BseBI CCWGG 4 cut(s) 402, 1022, 1037, 1307
BseCI ATCGAT 2 cut(s) 447, 1816
BseDI CCNNGG 8 cut(s) 18, 196, 917, 987, 1035, 1036, 1234, 1315
BseGI GGATG 5 cut(s) 522, 1205, 1361, 1414, 1557
BseJI GATNNNNATC 1 cut(s) 1556
BseLI CCNNNNNNNGG 6 cut(s) 109, 181, 1124, 1417, 1666, 1755
BseMI GCAATG 2 cut(s) 366, 1689
BseMII CTCAG 1 cut(s) 1268
BseNI ACTGG 6 cut(s) 479, 535, 1362, 1598, 1874, 1879
BseRI GAGGAG 2 cut(s) 1007, 1771
BseSI GKGCMC 3 cut(s) 768, 1660, 1933
BseX3I CGGCCG 1 cut(s) 1672
BseXI GCAGC 4 cut(s) 65, 738, 766, 1779
BseYI CCCAGC 1 cut(s) 318
BsgI GTGCAG 1 cut(s) 1668
Bsh1236I CGCG 2 cut(s) 287, 1236
Bsh1285I CGRYCG 4 cut(s) 338, 720, 1136, 1675
BshFI GGCC 5 cut(s) 380, 479, 1213, 1590, 1674
BshNI GGYRCC 2 cut(s) 1655, 1930
BshVI ATCGAT 2 cut(s) 447, 1816
BsiEI CGRYCG 4 cut(s) 338, 720, 1136, 1675
BsiHKAI GWGCWC 1 cut(s) 768
BsiSI CCGG 6 cut(s) 338, 619, 954, 1273, 1418, 1749
BslFI GGGAC 4 cut(s) 74, 1019, 1169, 1655
BslI CCNNNNNNNGG 6 cut(s) 109, 181, 1124, 1417, 1666, 1755
BsmAI GTCTC 2 cut(s) 521, 707
BsmBI CGTCTC 1 cut(s) 707
BsmFI GGGAC 4 cut(s) 74, 1019, 1169, 1655
BsmI GAATGC 1 cut(s) 1736
BsnI GGCC 5 cut(s) 380, 479, 1213, 1590, 1674
Bsp119I TTCGAA 1 cut(s) 1769
Bsp1286I GDGCHC 3 cut(s) 768, 1660, 1933
Bsp13I TCCGGA 1 cut(s) 1748
Bsp1720I GCTNAGC 1 cut(s) 1277
BspANI GGCC 5 cut(s) 380, 479, 1213, 1590, 1674
BspCNI CTCAG 1 cut(s) 1269
BspDI ATCGAT 2 cut(s) 447, 1816
BspEI TCCGGA 1 cut(s) 1748
BspFNI CGCG 2 cut(s) 287, 1236
BspLI GGNNCC 5 cut(s) 1212, 1232, 1657, 1788, 1932
BspMAI CTGCAG 2 cut(s) 253, 756
BspMI ACCTGC 1 cut(s) 674
BspPI GGATC 2 cut(s) 985, 1634
BspQI GCTCTTC 1 cut(s) 1377
BspT104I TTCGAA 1 cut(s) 1769
BspT107I GGYRCC 2 cut(s) 1655, 1930
BsrDI GCAATG 2 cut(s) 366, 1689
BsrFI RCCGGY 1 cut(s) 1272
BsrI ACTGG 6 cut(s) 479, 535, 1362, 1598, 1874, 1879
BssAI RCCGGY 1 cut(s) 1272
BssECI CCNNGG 8 cut(s) 18, 196, 917, 987, 1035, 1036, 1234, 1315
BssNI GRCGYC 2 cut(s) 348, 958
BssT1I CCWWGG 3 cut(s) 18, 196, 1315
Bst2UI CCWGG 4 cut(s) 402, 1022, 1037, 1307
Bst4CI ACNGT 8 cut(s) 155, 212, 501, 581, 921, 1646, 1715, 1969
Bst6I CTCTTC 1 cut(s) 1377
BstACI GRCGYC 2 cut(s) 348, 958
BstAPI GCANNNNNTGC 2 cut(s) 763, 1655
BstBAI YACGTR 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 1769
BstC8I GCNNGC 6 cut(s) 378, 759, 841, 1238, 1536, 1809
BstDEI CTNAG 7 cut(s) 24, 667, 835, 1265, 1277, 1455, 1925
BstDSI CCRYGG 3 cut(s) 917, 987, 1234
BstF5I GGATG 5 cut(s) 522, 1205, 1361, 1414, 1557
BstFNI CGCG 2 cut(s) 287, 1236
BstH2I RGCGCY 1 cut(s) 619
BstHHI GCGC 2 cut(s) 618, 808
BstMAI GTCTC 2 cut(s) 521, 707
BstMCI CGRYCG 4 cut(s) 338, 720, 1136, 1675
BstMWI GCNNNNNNNGC 7 cut(s) 356, 485, 763, 1145, 1445, 1655, 1798
BstNI CCWGG 4 cut(s) 402, 1022, 1037, 1307
BstNSI RCATGY 6 cut(s) 1096, 1186, 1407, 1545, 1682, 1799
BstSCI CCNGG 5 cut(s) 400, 1020, 1035, 1305, 1417
BstSFI CTRYAG 2 cut(s) 249, 752
BstSLI GKGCMC 3 cut(s) 768, 1660, 1933
BstUI CGCG 2 cut(s) 287, 1236
BstV1I GCAGC 4 cut(s) 65, 738, 766, 1779
BstV2I GAAGAC 2 cut(s) 213, 735
BstZI CGGCCG 1 cut(s) 1672
Bsu15I ATCGAT 2 cut(s) 447, 1816
BsuI GTATCC 2 cut(s) 528, 756
BsuRI GGCC 5 cut(s) 380, 479, 1213, 1590, 1674
BsuTUI ATCGAT 2 cut(s) 447, 1816
BtgI CCRYGG 3 cut(s) 917, 987, 1234
BtsCI GGATG 5 cut(s) 522, 1205, 1361, 1414, 1557
BtsIMutI CAGTG 3 cut(s) 1591, 1629, 1651
BveI ACCTGC 1 cut(s) 674
Cac8I GCNNGC 6 cut(s) 378, 759, 841, 1238, 1536, 1809
CfoI GCGC 2 cut(s) 618, 808
Cfr10I RCCGGY 1 cut(s) 1272
Cfr13I GGNCC 5 cut(s) 379, 477, 686, 1211, 1253
Cfr42I CCGCGG 1 cut(s) 1237
ClaI ATCGAT 2 cut(s) 447, 1816
CseI GACGC 3 cut(s) 293, 356, 1409
CsiI ACCWGGT 1 cut(s) 1305
Csp6I GTAC 5 cut(s) 256, 609, 1076, 1407, 1974
CviQI GTAC 5 cut(s) 256, 609, 1076, 1407, 1974
DdeI CTNAG 7 cut(s) 24, 667, 835, 1265, 1277, 1455, 1925
DraIII CACNNNGTG 1 cut(s) 763
DrdI GACNNNNNNGTC 1 cut(s) 1499
DseDI GACNNNNNNGTC 1 cut(s) 1499
EaeI YGGCCR 2 cut(s) 1588, 1672
EagI CGGCCG 1 cut(s) 1672
Eam1104I CTCTTC 1 cut(s) 1377
EarI CTCTTC 1 cut(s) 1377
EciI GGCGGA 1 cut(s) 359
EclXI CGGCCG 1 cut(s) 1672
Eco130I CCWWGG 3 cut(s) 18, 196, 1315
Eco47I GGWCC 2 cut(s) 686, 1253
Eco52I CGGCCG 1 cut(s) 1672
Eco57I CTGAAG 1 cut(s) 1164
Eco72I CACGTG 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 845
EcoRII CCWGG 4 cut(s) 400, 1020, 1035, 1305
EcoT14I CCWWGG 3 cut(s) 18, 196, 1315
EcoT22I ATGCAT 2 cut(s) 522, 1736
ErhI CCWWGG 3 cut(s) 18, 196, 1315
Esp3I CGTCTC 1 cut(s) 707
FalI AAGNNNNNCTT 2 cut(s) 1161, 1193
FaqI GGGAC 4 cut(s) 74, 1019, 1169, 1655
FauI CCCGC 5 cut(s) 280, 832, 930, 1201, 1229
FauNDI CATATG 1 cut(s) 1474
FbaI TGATCA 1 cut(s) 828
Fnu4HI GCNGC 5 cut(s) 79, 752, 755, 1140, 1793
FokI GGATG 5 cut(s) 529, 1212, 1348, 1401, 1544
Fsp4HI GCNGC 5 cut(s) 79, 752, 755, 1140, 1793
FspBI CTAG 4 cut(s) 197, 203, 1101, 1316
GlaI GCGC 2 cut(s) 617, 807
GluI GCNGC 5 cut(s) 79, 752, 755, 1140, 1793
GsaI CCCAGC 1 cut(s) 322
HaeII RGCGCY 1 cut(s) 619
HaeIII GGCC 5 cut(s) 380, 479, 1213, 1590, 1674
HapII CCGG 6 cut(s) 338, 619, 954, 1273, 1418, 1749
HgaI GACGC 3 cut(s) 293, 356, 1409
HhaI GCGC 2 cut(s) 618, 808
Hin1I GRCGYC 2 cut(s) 348, 958
Hin6I GCGC 2 cut(s) 616, 806
HinP1I GCGC 2 cut(s) 616, 806
HincII GTYRAC 3 cut(s) 7, 172, 1711
HindII GTYRAC 3 cut(s) 7, 172, 1711
HinfI GANTC 9 cut(s) 625, 734, 1025, 1157, 1469, 1500, 1813, 1818, 1830
HpaII CCGG 6 cut(s) 338, 619, 954, 1273, 1418, 1749
HphI GGTGA 3 cut(s) 227, 715, 1232
Hpy166II GTNNAC 8 cut(s) 7, 172, 454, 706, 766, 1076, 1190, 1711
Hpy188I TCNGA 6 cut(s) 50, 116, 727, 870, 1891, 1906
Hpy188III TCNNGA 5 cut(s) 826, 1583, 1618, 1727, 1749
Hpy8I GTNNAC 8 cut(s) 7, 172, 454, 706, 766, 1076, 1190, 1711
Hpy99I CGWCG 2 cut(s) 97, 134
HpyAV CCTTC 4 cut(s) 128, 1064, 1283, 1565
HpyCH4III ACNGT 8 cut(s) 155, 212, 501, 581, 921, 1646, 1715, 1969
HpyCH4IV ACGT 5 cut(s) 177, 190, 386, 958, 1707
HpyF10VI GCNNNNNNNGC 7 cut(s) 356, 485, 763, 1145, 1445, 1655, 1798
HpyF3I CTNAG 7 cut(s) 24, 667, 835, 1265, 1277, 1455, 1925
HpySE526I ACGT 5 cut(s) 177, 190, 386, 958, 1707
Hsp92I GRCGYC 2 cut(s) 348, 958
HspAI GCGC 2 cut(s) 616, 806
Kpn2I TCCGGA 1 cut(s) 1748
Ksp22I TGATCA 1 cut(s) 828
KspI CCGCGG 1 cut(s) 1237
LguI GCTCTTC 1 cut(s) 1377
LmnI GCTCC 2 cut(s) 613, 989
Lsp1109I GCAGC 4 cut(s) 65, 738, 766, 1779
LweI GCATC 5 cut(s) 507, 1020, 1190, 1370, 1423
MabI ACCWGGT 1 cut(s) 1305
MaeI CTAG 4 cut(s) 197, 203, 1101, 1316
MaeII ACGT 5 cut(s) 177, 190, 386, 958, 1707
MaeIII GTNAC 3 cut(s) 404, 1103, 1717
MboII GAAGA 5 cut(s) 218, 740, 908, 1181, 1394
MfeI CAATTG 1 cut(s) 489
MhlI GDGCHC 3 cut(s) 768, 1660, 1933
MlsI TGGCCA 1 cut(s) 1590
MluCI AATT 9 cut(s) 120, 489, 845, 907, 941, 1051, 1296, 1722, 1908
MluNI TGGCCA 1 cut(s) 1590
MlyI GAGTC 4 cut(s) 1151, 1478, 1509, 1839
MmeI TCCRAC 3 cut(s) 94, 127, 1680
Mox20I TGGCCA 1 cut(s) 1590
Mph1103I ATGCAT 2 cut(s) 522, 1736
MroI TCCGGA 1 cut(s) 1748
MroXI GAANNNNTTC 2 cut(s) 164, 1817
MscI TGGCCA 1 cut(s) 1590
MseI TTAA 6 cut(s) 66, 632, 792, 963, 1488, 1884
MslI CAYNNNNRTG 2 cut(s) 449, 1562
Msp20I TGGCCA 1 cut(s) 1590
MspA1I CMGCKG 5 cut(s) 318, 751, 1208, 1236, 1792
MspI CCGG 6 cut(s) 338, 619, 954, 1273, 1418, 1749
MspR9I CCNGG 5 cut(s) 402, 1022, 1037, 1307, 1419
MunI CAATTG 1 cut(s) 489
Mva1269I GAATGC 1 cut(s) 1736
MvaI CCWGG 4 cut(s) 402, 1022, 1037, 1307
MvnI CGCG 2 cut(s) 287, 1236
MwoI GCNNNNNNNGC 7 cut(s) 356, 485, 763, 1145, 1445, 1655, 1798
NciI CCSGG 1 cut(s) 1419
NdeI CATATG 1 cut(s) 1474
NlaIV GGNNCC 5 cut(s) 1212, 1232, 1657, 1788, 1932
NmuCI GTSAC 1 cut(s) 1717
NsiI ATGCAT 2 cut(s) 522, 1736
NspI RCATGY 6 cut(s) 1096, 1186, 1407, 1545, 1682, 1799
NspV TTCGAA 1 cut(s) 1769
PasI CCCWGGG 1 cut(s) 1036
PciI ACATGT 2 cut(s) 1092, 1541
PciSI GCTCTTC 1 cut(s) 1377
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 264
PctI GAATGC 1 cut(s) 1736
PdmI GAANNNNTTC 2 cut(s) 164, 1817
PfeI GAWTC 5 cut(s) 625, 734, 1025, 1813, 1818
PflFI GACNNNGTC 1 cut(s) 1715
PflMI CCANNNNNTGG 2 cut(s) 109, 1124
PkrI GCNGC 5 cut(s) 80, 753, 756, 1141, 1794
Ple19I CGATCG 2 cut(s) 720, 1136
PleI GAGTC 4 cut(s) 1151, 1477, 1508, 1838
PmaCI CACGTG 1 cut(s) 191
PmlI CACGTG 1 cut(s) 191
PpsI GAGTC 4 cut(s) 1151, 1477, 1508, 1838
Ppu21I YACGTR 1 cut(s) 191
PscI ACATGT 2 cut(s) 1092, 1541
PshBI ATTAAT 1 cut(s) 632
Psp6I CCWGG 4 cut(s) 400, 1020, 1035, 1305
PspCI CACGTG 1 cut(s) 191
PspFI CCCAGC 1 cut(s) 318
PspGI CCWGG 4 cut(s) 400, 1020, 1035, 1305
PspN4I GGNNCC 5 cut(s) 1212, 1232, 1657, 1788, 1932
PspPI GGNCC 5 cut(s) 379, 477, 686, 1211, 1253
PstI CTGCAG 2 cut(s) 253, 756
PsyI GACNNNGTC 1 cut(s) 1715
PvuI CGATCG 2 cut(s) 720, 1136
PvuII CAGCTG 1 cut(s) 318
RsaI GTAC 5 cut(s) 257, 610, 1077, 1408, 1975
RsaNI GTAC 5 cut(s) 256, 609, 1076, 1407, 1974
RseI CAYNNNNRTG 2 cut(s) 449, 1562
SacII CCGCGG 1 cut(s) 1237
SapI GCTCTTC 1 cut(s) 1377
SaqAI TTAA 6 cut(s) 66, 632, 792, 963, 1488, 1884
SatI GCNGC 5 cut(s) 79, 752, 755, 1140, 1793
Sau96I GGNCC 5 cut(s) 379, 477, 686, 1211, 1253
SchI GAGTC 4 cut(s) 1151, 1478, 1509, 1839
ScrFI CCNGG 5 cut(s) 402, 1022, 1037, 1307, 1419
SduI GDGCHC 3 cut(s) 768, 1660, 1933
SexAI ACCWGGT 1 cut(s) 1305
SfaNI GCATC 5 cut(s) 507, 1020, 1190, 1370, 1423
SfcI CTRYAG 2 cut(s) 249, 752
Sfr303I CCGCGG 1 cut(s) 1237
SfuI TTCGAA 1 cut(s) 1769
SgrBI CCGCGG 1 cut(s) 1237
SinI GGWCC 2 cut(s) 686, 1253
SmiMI CAYNNNNRTG 2 cut(s) 449, 1562
Sse9I AATT 9 cut(s) 120, 489, 845, 907, 941, 1051, 1296, 1722, 1908
SspI AATATT 1 cut(s) 1244
SspMI CTAG 4 cut(s) 197, 203, 1101, 1316
StyD4I CCNGG 5 cut(s) 400, 1020, 1035, 1305, 1417
StyI CCWWGG 3 cut(s) 18, 196, 1315
TaaI ACNGT 8 cut(s) 155, 212, 501, 581, 921, 1646, 1715, 1969
TaiI ACGT 5 cut(s) 180, 193, 389, 961, 1710
TasI AATT 9 cut(s) 120, 489, 845, 907, 941, 1051, 1296, 1722, 1908
TauI GCSGC 1 cut(s) 1142
TfiI GAWTC 5 cut(s) 625, 734, 1025, 1813, 1818
Tru1I TTAA 6 cut(s) 66, 632, 792, 963, 1488, 1884
Tru9I TTAA 6 cut(s) 66, 632, 792, 963, 1488, 1884
TscAI CASTG 3 cut(s) 1598, 1636, 1651
TseFI GTSAC 1 cut(s) 1717
TseI GCWGC 4 cut(s) 78, 751, 754, 1792
Tsp45I GTSAC 1 cut(s) 1717
TspDTI ATGAA 3 cut(s) 1546, 1584, 1965
TspGWI ACGGA 6 cut(s) 273, 626, 662, 908, 1004, 1682
TspRI CASTG 3 cut(s) 1598, 1636, 1651
Tth111I GACNNNGTC 1 cut(s) 1715
Van91I CCANNNNNTGG 2 cut(s) 109, 1124
VneI GTGCAC 1 cut(s) 764
VpaK11BI GGWCC 2 cut(s) 686, 1253
VspI ATTAAT 1 cut(s) 632
XapI RAATTY 3 cut(s) 845, 1051, 1908
XceI RCATGY 6 cut(s) 1096, 1186, 1407, 1545, 1682, 1799
XcmI CCANNNNNNNNNTGG 2 cut(s) 358, 636
XmaJI CCTAGG 2 cut(s) 196, 1315
XmnI GAANNNNTTC 2 cut(s) 164, 1817
XspI CTAG 4 cut(s) 197, 203, 1101, 1316
ZraI GACGTC 1 cut(s) 959
Zsp2I ATGCAT 2 cut(s) 522, 1736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.