Rorug07G0182100

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000124
Physical Location & Seq
Reverse (-)
15214161 .. 15214727
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0182100.1

Sequence Viewer

Length: 468 bp
ATGGCCTCTTCTCAGCTCTTCGTTATCCTTGCCATCCTAGCCATTTTCGCCCCTTCAATCCTGGCTACAGATTACATCGTTGGTGACGAGAAAGGTTGGACTACTAACTTCGATTACCAGGCTTGGGCTCAGGGAAAGATGTTCGTTGTTGGTGACAACCTTGTATTCAATTACCCCAAAGGAGTCCACAACGTAAACAAAGTGAACGGCACCGGGTTTCAACAGTGTGCAGCTCCTGTCGGCGCTGCGCCATTAACAAGTGGTAATGATGTGATCCACCTTGCAACCCCAGGAAGAAAATGGTACATTTGTGGTGTTGCTAAGCATTGTGCTGATGGGGGACAGAAGCTCGTCATCACTGTCATGCCATCGACTGCTCCAAGCCCTAGCCCCGTTGCTGCTAGCCCAAGCTCCCTCTCTGCATCATCCGCTGCTCCTAGCCCTAGCCCCACCGCAGGATGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

155

Amino Acids

15.94

Weight (kDa)

7.68

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 8.3e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AciI CCGC 2 cut(s) 429, 453
AclWI GGATC 1 cut(s) 268
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 124, 455
AgsI TTSAA 3 cut(s) 57, 169, 221
AjnI CCWGG 3 cut(s) 60, 117, 289
AluBI AGCT 5 cut(s) 16, 233, 349, 411, 465
AluI AGCT 5 cut(s) 16, 233, 349, 411, 465
AlwI GGATC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 5 cut(s) 230, 245, 398, 431, 462
AspLEI GCGC 2 cut(s) 245, 250
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 95, 164
AsuNHI GCTAGC 1 cut(s) 401
BaeI ACNNNNGTAYC 2 cut(s) 295, 328
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 130
BbvI GCAGC 4 cut(s) 232, 242, 385, 418
BccI CCATC 3 cut(s) 41, 329, 376
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 3 cut(s) 62, 119, 291
BcnI CCSGG 1 cut(s) 214
BfaI CTAG 6 cut(s) 38, 387, 402, 438, 444, 466
BfmI CTRYAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 5 cut(s) 231, 246, 399, 432, 463
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 5 cut(s) 232, 247, 400, 433, 464
Bme1390I CCNGG 4 cut(s) 62, 119, 214, 291
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 4 cut(s) 62, 119, 214, 291
BmsI GCATC 2 cut(s) 431, 449
BmtI GCTAGC 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 455
BseBI CCWGG 3 cut(s) 62, 119, 291
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 3 cut(s) 33, 425, 464
BseLI CCNNNNNNNGG 2 cut(s) 124, 455
BseMII CTCAG 2 cut(s) 26, 143
BseXI GCAGC 4 cut(s) 232, 242, 385, 418
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 2 cut(s) 124, 455
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 273
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 2 cut(s) 429, 453
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 25, 142
BspLI GGNNCC 1 cut(s) 211
BspOI GCTAGC 1 cut(s) 405
BspPI GGATC 1 cut(s) 268
BspQI GCTCTTC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 1 cut(s) 273
Bst2UI CCWGG 3 cut(s) 62, 119, 291
Bst4CI ACNGT 2 cut(s) 225, 361
Bst6I CTCTTC 2 cut(s) 13, 23
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 3 cut(s) 12, 129, 321
BstF5I GGATG 3 cut(s) 33, 425, 464
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 2 cut(s) 245, 250
BstKTI GATC 1 cut(s) 276
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 428
BstNI CCWGG 3 cut(s) 62, 119, 291
BstSCI CCNGG 4 cut(s) 60, 117, 212, 289
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 4 cut(s) 232, 242, 385, 418
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 3 cut(s) 33, 425, 464
BtsIMutI CAGTG 2 cut(s) 230, 357
Cac8I GCNNGC 1 cut(s) 403
CaiI CAGNNNCTG 1 cut(s) 236
CfoI GCGC 2 cut(s) 245, 250
Csp6I GTAC 1 cut(s) 304
CviAII CATG 1 cut(s) 364
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 3 cut(s) 12, 129, 321
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
Eam1104I CTCTTC 2 cut(s) 13, 23
EarI CTCTTC 2 cut(s) 13, 23
Eco24I GRGCYC 1 cut(s) 130
EcoRII CCWGG 3 cut(s) 60, 117, 289
EcoT38I GRGCYC 1 cut(s) 130
FaeI CATG 1 cut(s) 367
FaiI YATR 1 cut(s) 365
FaqI GGGAC 1 cut(s) 354
FatI CATG 1 cut(s) 363
Fnu4HI GCNGC 5 cut(s) 231, 246, 399, 432, 463
FokI GGATG 2 cut(s) 20, 412
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 5 cut(s) 231, 246, 399, 432, 463
FspBI CTAG 6 cut(s) 38, 387, 402, 438, 444, 466
GlaI GCGC 2 cut(s) 244, 249
GluI GCNGC 5 cut(s) 231, 246, 399, 432, 463
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 213
HhaI GCGC 2 cut(s) 245, 250
Hin1II CATG 1 cut(s) 367
Hin6I GCGC 2 cut(s) 243, 248
HinP1I GCGC 2 cut(s) 243, 248
HinfI GANTC 1 cut(s) 183
HpaII CCGG 1 cut(s) 213
HphI GGTGA 2 cut(s) 95, 164
Hpy166II GTNNAC 3 cut(s) 187, 196, 205
Hpy8I GTNNAC 3 cut(s) 187, 196, 205
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 2 cut(s) 225, 361
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 4 cut(s) 230, 284, 422, 462
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 428
HpyF3I CTNAG 3 cut(s) 12, 129, 321
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 1 cut(s) 367
HspAI GCGC 2 cut(s) 243, 248
Kzo9I GATC 1 cut(s) 273
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 4 cut(s) 238, 382, 416, 439
Lsp1109I GCAGC 4 cut(s) 232, 242, 385, 418
LweI GCATC 2 cut(s) 431, 449
MaeI CTAG 6 cut(s) 38, 387, 402, 438, 444, 466
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 83, 152
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 2 cut(s) 10, 306
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 1 cut(s) 169
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 2 cut(s) 16, 425
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 4 cut(s) 62, 119, 214, 291
MteI GCGCNGCGC 1 cut(s) 246
MvaI CCWGG 3 cut(s) 62, 119, 291
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 428
NciI CCSGG 1 cut(s) 214
NdeII GATC 1 cut(s) 273
NheI GCTAGC 1 cut(s) 401
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 2 cut(s) 83, 152
PciSI GCTCTTC 1 cut(s) 23
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PkrI GCNGC 5 cut(s) 232, 247, 400, 433, 464
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Psp6I CCWGG 3 cut(s) 60, 117, 289
PspGI CCWGG 3 cut(s) 60, 117, 289
PspN4I GGNNCC 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 5 cut(s) 231, 246, 399, 432, 463
Sau3AI GATC 1 cut(s) 273
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 4 cut(s) 62, 119, 214, 291
SduI GDGCHC 1 cut(s) 130
SetI ASST 9 cut(s) 18, 97, 162, 195, 235, 282, 351, 413, 467
SfaNI GCATC 2 cut(s) 431, 449
SfcI CTRYAG 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 1 cut(s) 169
SsiI CCGC 2 cut(s) 429, 453
SspMI CTAG 6 cut(s) 38, 387, 402, 438, 444, 466
StyD4I CCNGG 4 cut(s) 60, 117, 212, 289
TaaI ACNGT 2 cut(s) 225, 361
TaiI ACGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 111, 371
TasI AATT 1 cut(s) 169
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 2 cut(s) 230, 364
TseFI GTSAC 2 cut(s) 83, 152
TseI GCWGC 5 cut(s) 230, 245, 398, 431, 462
Tsp45I GTSAC 2 cut(s) 83, 152
TspRI CASTG 2 cut(s) 230, 364
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XspI CTAG 6 cut(s) 38, 387, 402, 438, 444, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.