Rh1DG053700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000124
Physical Location & Seq
Forward (+)
8581372 .. 8581969
598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG053700.1

Sequence Viewer

Length: 483 bp
ATGATGAATGTCAGCCAATTCGCTGCTGTGCCCCCACCACAAGAAGTTCCAGAGTTACAACAGGTCGATGAACATGTCGCGGATGAGCCGGGGATGCAGGAGGTAAATGTTGATGAGGCCGAGCAGGATATGGACATTGGCGGTGTAGAGGGGGCTGGTTTGGGGGCTTCTAGTAATGGGCCTGTGTACGAGGAGGTTGTCGGTGGCTACCAATGCCTCTGTCATTGTGATGTCAGGATTCAGCAAGGTCATGGAGCGTTTCTCACAAAAGATTCTCATTCTCCGTTTCCTAGAAAGGGTAACGCAAGTGTTAAGCTACAAAGGTCAGACGGAGCCGTGTGGGATATCGAGATCGTGCCTAGCAACGACACTCACTTCCTCACTAGGGGATACAGTAAATTCAAGGAGGTCAATGGACTTCGCAGGGGTCAGCTTCTCCGACTGTATATCGTCTCAAGACTGATGTTCATATTCGAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.67

Weight (kDa)

4.83

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 95 - 153 3.1e-06 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 80
AciI CCGC 2 cut(s) 80, 141
AcsI RAATTY 1 cut(s) 398
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 296, 385
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 1 cut(s) 403
AluBI AGCT 2 cut(s) 316, 433
AluI AGCT 2 cut(s) 316, 433
Alw26I GTCTC 1 cut(s) 457
AoxI GGCC 2 cut(s) 117, 179
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 90
BaeGI GKGCMC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 10
BceAI ACGGC 1 cut(s) 320
BciVI GTATCC 1 cut(s) 383
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 4 cut(s) 171, 291, 360, 384
BfuI GTATCC 1 cut(s) 383
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 246, 278
BpuEI CTTGAG 1 cut(s) 439
BpuMI CCSGG 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 385
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 2 cut(s) 88, 99
BseLI CCNNNNNNNGG 2 cut(s) 296, 385
BseRI GAGGAG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 2 cut(s) 119, 181
BsiSI CCGG 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 296, 385
BsmAI GTCTC 1 cut(s) 457
BsmBI CGTCTC 1 cut(s) 457
BsnI GGCC 2 cut(s) 119, 181
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 351
BspACI CCGC 2 cut(s) 80, 141
BspANI GGCC 2 cut(s) 119, 181
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 334
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 1 cut(s) 351
Bst4CI ACNGT 2 cut(s) 395, 444
BstF5I GGATG 2 cut(s) 88, 99
BstFNI CGCG 1 cut(s) 80
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 457
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 2 cut(s) 94, 213
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 88
BstSLI GKGCMC 1 cut(s) 33
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 10
BsuI GTATCC 1 cut(s) 383
BsuRI GGCC 2 cut(s) 119, 181
BtsCI GGATG 2 cut(s) 88, 99
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 187
CviAII CATG 2 cut(s) 74, 251
CviQI GTAC 1 cut(s) 187
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eco32I GATATC 1 cut(s) 346
EcoRV GATATC 1 cut(s) 346
Esp3I CGTCTC 1 cut(s) 457
FaeI CATG 2 cut(s) 77, 254
FaiI YATR 6 cut(s) 75, 131, 252, 447, 470, 481
FatI CATG 2 cut(s) 73, 250
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 2 cut(s) 95, 106
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 4 cut(s) 171, 291, 360, 384
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 2 cut(s) 119, 181
HapII CCGG 1 cut(s) 89
Hin1II CATG 2 cut(s) 77, 254
HinfI GANTC 2 cut(s) 238, 272
HpaII CCGG 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 328, 440
Hpy188III TCNNGA 5 cut(s) 50, 235, 349, 456, 475
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4III ACNGT 2 cut(s) 395, 444
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 213
Hsp92II CATG 2 cut(s) 77, 254
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 254, 332
LpnPI CCDG 9 cut(s) 47, 63, 83, 102, 110, 141, 195, 220, 409
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 1 cut(s) 84
MaeI CTAG 4 cut(s) 171, 291, 360, 384
MaeIII GTNAC 2 cut(s) 54, 299
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 2 cut(s) 17, 398
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 8 cut(s) 94, 109, 142, 184, 187, 227, 389, 400
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 90
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 94, 213
NciI CCSGG 1 cut(s) 90
NdeII GATC 1 cut(s) 351
NlaIII CATG 2 cut(s) 77, 254
NlaIV GGNNCC 1 cut(s) 334
NmeAIII GCCGAG 1 cut(s) 145
NspI RCATGY 1 cut(s) 77
PciI ACATGT 1 cut(s) 73
PfeI GAWTC 2 cut(s) 238, 272
PkrI GCNGC 1 cut(s) 25
PscI ACATGT 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 179
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 1 cut(s) 33
SetI ASST 8 cut(s) 66, 105, 198, 250, 318, 326, 411, 435
SfaNI GCATC 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
Sse9I AATT 2 cut(s) 17, 398
SsiI CCGC 2 cut(s) 80, 141
SspMI CTAG 4 cut(s) 171, 291, 360, 384
StyD4I CCNGG 1 cut(s) 88
TaaI ACNGT 2 cut(s) 395, 444
TaqI TCGA 3 cut(s) 66, 348, 474
TasI AATT 2 cut(s) 17, 398
TfiI GAWTC 2 cut(s) 238, 272
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 3 cut(s) 20, 84, 457
TspGWI ACGGA 2 cut(s) 273, 345
XapI RAATTY 1 cut(s) 398
XceI RCATGY 1 cut(s) 77
XspI CTAG 4 cut(s) 171, 291, 360, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.