Rh7DG325100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000124
Physical Location & Seq
Reverse (-)
39170114 .. 39174877
4764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG325100.1

Sequence Viewer

Length: 768 bp
ATGAATATGACCAATCCCCTTCCAGTAGGCAACTGTGGAACCCCCATGCAGGATGAACCGCCTGAGGTCCCTCCGGCTCCTTCGAACTCACCGACTAGTATGGTGGAAGTCCATGTTCATTCTTTGTTTCCTCTTCATGCAGACGATTCGACCAATACATTTTGTAACTGCAACGTCAATGAAGAAGAACTGATGACGGTGATGCGCGGTCCACTCTTCGGGGGAGGTGGAAATAGCAATGTATTGAAGAGATCCAGCCAACTGGTACCCGGAGATTTGGTGACCAACTCCAGCATCCAGGAGTTCATATTAAGCACCCGGGGTCTGTCCCTTGAAAAGGGTACAGAGATCAAGCTGGGGGCTACCGTAGACGTGGGAGAGTATGGTATCTTTGTGCAGGACTTGTGCGATGGAGAAGGTCGGATACAGGTCTATCTATTGAAGGAGATTGTCATGAACCGGGCTGATGTGGACGACACGTTCTGTATTGCATTTACAATGCTTGCATTGGCTCTGGTGCTATGCCTAGGCACGAGTGACGATGTCGATCCGTCCTTGGTACTCCCGCTACTAGAGATGGGGGAGATTGGGAAGAAAAATTGGGTTTCATTCTGTGTGAAGACATTACTGGAAGCTGTGACTACTCAGCGGGAATCTTGTGACTGTGTAATTGGTGGGTGCATTCTGTTTCTGCAAACCCTTTATTTTGATAAGGTTGGCGATTCCATGTTTCACGTGGATAGGTCTTTCCTGCCACTCAGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

255

Amino Acids

27.71

Weight (kDa)

4.44

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 265
AccI GTMKAC 1 cut(s) 369
AccII CGCG 1 cut(s) 207
AciI CCGC 4 cut(s) 59, 207, 566, 649
AclWI GGATC 2 cut(s) 246, 542
AcvI CACGTG 1 cut(s) 736
AfaI GTAC 3 cut(s) 267, 343, 561
AfiI CCNNNNNNNGG 4 cut(s) 49, 218, 337, 761
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 3 cut(s) 247, 335, 442
AhlI ACTAGT 1 cut(s) 95
AjiI CACGTC 1 cut(s) 373
AjnI CCWGG 1 cut(s) 297
AloI GAACNNNNNNTCC 2 cut(s) 464, 496
AluBI AGCT 2 cut(s) 355, 635
AluI AGCT 2 cut(s) 355, 635
AlwI GGATC 2 cut(s) 246, 542
Ama87I CYCGRG 1 cut(s) 318
Asp718I GGTACC 1 cut(s) 265
AspA2I CCTAGG 1 cut(s) 526
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 67, 209
AsuC2I CCSGG 4 cut(s) 270, 319, 320, 461
AsuHPI GGTGA 3 cut(s) 81, 211, 292
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 318
AvaII GGWCC 2 cut(s) 67, 209
AvrII CCTAGG 1 cut(s) 526
AxyI CCTNAGG 1 cut(s) 63
BanI GGYRCC 1 cut(s) 265
BarI GAAGNNNNNNTAC 2 cut(s) 408, 440
BauI CACGAG 1 cut(s) 532
BbrPI CACGTG 1 cut(s) 736
BbsI GAAGAC 1 cut(s) 626
BccI CCATC 2 cut(s) 404, 571
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BciT130I CCWGG 1 cut(s) 299
BciVI GTATCC 1 cut(s) 417
BcnI CCSGG 4 cut(s) 270, 319, 320, 461
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 3 cut(s) 96, 527, 572
BfuI GTATCC 1 cut(s) 417
BlnI CCTAGG 1 cut(s) 526
Bme1390I CCNGG 5 cut(s) 270, 299, 319, 320, 461
Bme18I GGWCC 2 cut(s) 67, 209
BmeT110I CYCGRG 1 cut(s) 318
BmgBI CACGTC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 67, 209
BmiI GGNNCC 4 cut(s) 40, 69, 78, 267
BmrFI CCNGG 5 cut(s) 270, 299, 319, 320, 461
BmsI GCATC 2 cut(s) 192, 303
BpiI GAAGAC 1 cut(s) 626
BpmI CTGGAG 1 cut(s) 274
Bpu14I TTCGAA 1 cut(s) 83
BpuMI CCSGG 4 cut(s) 270, 319, 320, 461
BsaAI YACGTR 1 cut(s) 736
BsaBI GATNNNNATC 1 cut(s) 546
BsaJI CCNNGG 4 cut(s) 318, 319, 526, 555
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 218, 337, 761
Bse1I ACTGG 3 cut(s) 23, 267, 633
Bse21I CCTNAGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 244
Bse8I GATNNNNATC 1 cut(s) 546
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 4 cut(s) 318, 319, 526, 555
BseGI GGATG 2 cut(s) 58, 294
BseJI GATNNNNATC 1 cut(s) 546
BseLI CCNNNNNNNGG 4 cut(s) 49, 218, 337, 761
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 2 cut(s) 54, 659
BseNI ACTGG 3 cut(s) 23, 267, 633
BseYI CCCAGC 1 cut(s) 355
BsgI GTGCAG 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 207
BshNI GGYRCC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 318
BsiSI CCGG 4 cut(s) 74, 270, 319, 460
BslFI GGGAC 2 cut(s) 53, 313
BslI CCNNNNNNNGG 4 cut(s) 49, 218, 337, 761
BsmFI GGGAC 2 cut(s) 53, 313
BsmI GAATGC 1 cut(s) 681
BsoBI CYCGRG 1 cut(s) 318
Bsp119I TTCGAA 1 cut(s) 83
Bsp143I GATC 3 cut(s) 251, 348, 547
BspACI CCGC 4 cut(s) 59, 207, 566, 649
BspCNI CTCAG 2 cut(s) 55, 658
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 453
BspLI GGNNCC 4 cut(s) 40, 69, 78, 267
BspPI GGATC 2 cut(s) 246, 542
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 244
BsrI ACTGG 3 cut(s) 23, 267, 633
BssECI CCNNGG 4 cut(s) 318, 319, 526, 555
BssMI GATC 3 cut(s) 251, 348, 547
BssSI CACGAG 1 cut(s) 532
BssT1I CCWWGG 2 cut(s) 526, 555
Bst2BI CACGAG 1 cut(s) 532
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 4 cut(s) 35, 199, 367, 665
Bst6I CTCTTC 3 cut(s) 138, 221, 242
BstBAI YACGTR 1 cut(s) 736
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 3 cut(s) 63, 645, 758
BstEII GGTNACC 1 cut(s) 280
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 2 cut(s) 58, 294
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 3 cut(s) 254, 351, 550
BstMBI GATC 3 cut(s) 251, 348, 547
BstNI CCWGG 1 cut(s) 299
BstPI GGTNACC 1 cut(s) 280
BstSCI CCNGG 5 cut(s) 268, 297, 317, 318, 459
BstUI CGCG 1 cut(s) 207
BstV2I GAAGAC 1 cut(s) 626
BstX2I RGATCY 1 cut(s) 251
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 1 cut(s) 251
Bsu36I CCTNAGG 1 cut(s) 63
BsuI GTATCC 1 cut(s) 417
BtgZI GCGATG 1 cut(s) 423
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 2 cut(s) 58, 294
Cac8I GCNNGC 1 cut(s) 504
CciI TCATGA 1 cut(s) 453
CfoI GCGC 1 cut(s) 207
Cfr13I GGNCC 2 cut(s) 67, 209
Cfr9I CCCGGG 1 cut(s) 318
Csp6I GTAC 3 cut(s) 266, 342, 560
CviAII CATG 5 cut(s) 46, 113, 137, 454, 727
CviJI RGCY 7 cut(s) 77, 258, 355, 362, 464, 512, 635
CviKI_1 RGCY 7 cut(s) 77, 258, 355, 362, 464, 512, 635
CviQI GTAC 3 cut(s) 266, 342, 560
DdeI CTNAG 3 cut(s) 63, 645, 758
DpnI GATC 3 cut(s) 253, 350, 549
DpnII GATC 3 cut(s) 251, 348, 547
Eam1104I CTCTTC 3 cut(s) 138, 221, 242
EarI CTCTTC 3 cut(s) 138, 221, 242
Eco130I CCWWGG 2 cut(s) 526, 555
Eco47I GGWCC 2 cut(s) 67, 209
Eco72I CACGTG 1 cut(s) 736
Eco81I CCTNAGG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 318
Eco91I GGTNACC 1 cut(s) 280
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 297
EcoT14I CCWWGG 2 cut(s) 526, 555
ErhI CCWWGG 2 cut(s) 526, 555
FaeI CATG 5 cut(s) 49, 116, 140, 457, 730
FaqI GGGAC 2 cut(s) 53, 313
FatI CATG 5 cut(s) 45, 112, 136, 453, 726
FauI CCCGC 2 cut(s) 573, 642
FblI GTMKAC 1 cut(s) 369
FokI GGATG 2 cut(s) 65, 281
FspBI CTAG 3 cut(s) 96, 527, 572
GlaI GCGC 1 cut(s) 206
GsaI CCCAGC 1 cut(s) 359
GsuI CTGGAG 1 cut(s) 274
HapII CCGG 4 cut(s) 74, 270, 319, 460
HhaI GCGC 1 cut(s) 207
Hin1II CATG 5 cut(s) 49, 116, 140, 457, 730
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 3 cut(s) 146, 653, 722
HpaII CCGG 4 cut(s) 74, 270, 319, 460
HphI GGTGA 3 cut(s) 81, 211, 292
Hpy166II GTNNAC 3 cut(s) 212, 370, 472
Hpy188I TCNGA 2 cut(s) 423, 761
Hpy188III TCNNGA 1 cut(s) 454
Hpy8I GTNNAC 3 cut(s) 212, 370, 472
HpyAV CCTTC 4 cut(s) 29, 90, 410, 436
HpyCH4III ACNGT 4 cut(s) 35, 199, 367, 665
HpyCH4IV ACGT 4 cut(s) 174, 372, 479, 735
HpyCH4V TGCA 8 cut(s) 49, 140, 171, 397, 491, 506, 681, 694
HpyF3I CTNAG 3 cut(s) 63, 645, 758
HpySE526I ACGT 4 cut(s) 174, 372, 479, 735
Hsp92II CATG 5 cut(s) 49, 116, 140, 457, 730
HspAI GCGC 1 cut(s) 205
KpnI GGTACC 1 cut(s) 269
Kzo9I GATC 3 cut(s) 251, 348, 547
LmnI GCTCC 1 cut(s) 82
LweI GCATC 2 cut(s) 192, 303
MaeI CTAG 3 cut(s) 96, 527, 572
MaeII ACGT 4 cut(s) 174, 372, 479, 735
MaeIII GTNAC 5 cut(s) 164, 280, 536, 637, 659
MalI GATC 3 cut(s) 253, 350, 549
MboI GATC 3 cut(s) 251, 348, 547
MboII GAAGA 7 cut(s) 125, 194, 197, 208, 259, 604, 631
MflI RGATCY 1 cut(s) 251
MluCI AATT 2 cut(s) 598, 669
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 5 cut(s) 58, 81, 141, 218, 755
MseI TTAA 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 649
MspI CCGG 4 cut(s) 74, 270, 319, 460
MspR9I CCNGG 5 cut(s) 270, 299, 319, 320, 461
Mva1269I GAATGC 1 cut(s) 681
MvaI CCWGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 207
NciI CCSGG 4 cut(s) 270, 319, 320, 461
NdeII GATC 3 cut(s) 251, 348, 547
NlaIII CATG 5 cut(s) 49, 116, 140, 457, 730
NlaIV GGNNCC 4 cut(s) 40, 69, 78, 267
NmuCI GTSAC 4 cut(s) 280, 536, 637, 659
NspV TTCGAA 1 cut(s) 83
PagI TCATGA 1 cut(s) 453
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PctI GAATGC 1 cut(s) 681
PfeI GAWTC 3 cut(s) 146, 653, 722
PflFI GACNNNGTC 1 cut(s) 542
PfoI TCCNGGA 1 cut(s) 297
PmaCI CACGTG 1 cut(s) 736
PmlI CACGTG 1 cut(s) 736
Ppu21I YACGTR 1 cut(s) 736
PpuMI RGGWCCY 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 297
PspCI CACGTG 1 cut(s) 736
PspEI GGTNACC 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 4 cut(s) 40, 69, 78, 267
PspPI GGNCC 2 cut(s) 67, 209
PspPPI RGGWCCY 1 cut(s) 67
PsuI RGATCY 1 cut(s) 251
PsyI GACNNNGTC 1 cut(s) 542
RsaI GTAC 3 cut(s) 267, 343, 561
RsaNI GTAC 3 cut(s) 266, 342, 560
SaqAI TTAA 1 cut(s) 311
Sau3AI GATC 3 cut(s) 251, 348, 547
Sau96I GGNCC 2 cut(s) 67, 209
ScrFI CCNGG 5 cut(s) 270, 299, 319, 320, 461
SfaNI GCATC 2 cut(s) 192, 303
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 2 cut(s) 67, 209
SmaI CCCGGG 1 cut(s) 320
SpeI ACTAGT 1 cut(s) 95
Sse9I AATT 2 cut(s) 598, 669
SsiI CCGC 4 cut(s) 59, 207, 566, 649
SspMI CTAG 3 cut(s) 96, 527, 572
StyD4I CCNGG 5 cut(s) 268, 297, 317, 318, 459
StyI CCWWGG 2 cut(s) 526, 555
TaaI ACNGT 4 cut(s) 35, 199, 367, 665
TaiI ACGT 4 cut(s) 177, 375, 482, 738
TaqI TCGA 3 cut(s) 83, 149, 546
TasI AATT 2 cut(s) 598, 669
TfiI GAWTC 3 cut(s) 146, 653, 722
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TseFI GTSAC 4 cut(s) 280, 536, 637, 659
Tsp45I GTSAC 4 cut(s) 280, 536, 637, 659
TspDTI ATGAA 8 cut(s) 17, 69, 107, 125, 195, 295, 470, 597
TspGWI ACGGA 1 cut(s) 540
TspMI CCCGGG 1 cut(s) 318
Tth111I GACNNNGTC 1 cut(s) 542
VpaK11BI GGWCC 2 cut(s) 67, 209
XagI CCTNNNNNAGG 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 733
XmaI CCCGGG 1 cut(s) 318
XmaJI CCTAGG 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 369
XspI CTAG 3 cut(s) 96, 527, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.