Rmu_sc0006373.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006373.1
OG0000124
Physical Location & Seq
Reverse (-)
29423 .. 31239
1817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006373.1_g000005.1.cds

Sequence Viewer

Length: 1035 bp
atgtgctacataaacggggacgagtttggacgtgtaatgggcacacacgacggtggagaaaggattgtgctaggggagggcaaagaagcaaaagagtatggaaaaacagtttgtccaatgtgcgatgtggaaggtagaatgacaattgagttgttgactaacatagtaagtaaaagaagagaggtggacgacactttcaagattgcgtttgcaatgttggcactaacttgtgtgatatgcccgggagtagatgatgcggttgacgtaggattgttgcttccacttatggagacatcaaaaatagtgcgaaaaaattgggcctcatttgtagtcagtcgcctaatggagggtgtgaaacggcaccaggaggaaggaactcccgtggtggggggatgtttgatatttcttcaacttctataccttgacaaagtgggggacgttcttacacctgataaggacaacctttgtacacctgtaatgtattggaacactaataaggtgcatgaaattgtgaacaagataaggttgacgggaggccacaaaagtcctattgtcatgttggagaagagcaagaggacgaagagattacaagacgcaggtcatgaatgcagggtttcgagattcggacggaagcgggacgtccacaagaccatgatggacttgcagttggatgtgagttcgatgaaagaccgcatgtgggatatgaaatgggaagtaagtcgaatgcaacccaaattcttggactttacaaagggggtagaattgacacttcaggaactcaaacaaacattttcacaagtaaaaagtgaattttacacaatctctaagcaacaattagggttggaaaggactaaggaggagaaatttcgggtaattaacaatgtggtcaagggcatgggagggattgatgagacaaaaaggcagccttccaccgtgggaatgtgcaacgatgactgcagtggagaaattcatttgccaaataacaagattatgcttaggaatatgtggaaaatggtcacaatcaatttgccgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

344

Amino Acids

39.23

Weight (kDa)

8.7

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 642
Acc36I ACCTGC 1 cut(s) 587
AccB1I GGYRCC 1 cut(s) 360
AciI CCGC 3 cut(s) 257, 634, 691
AcsI RAATTY 4 cut(s) 734, 809, 863, 966
AcuI CTGAAG 1 cut(s) 755
AcyI GRCGYC 1 cut(s) 639
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 4 cut(s) 346, 386, 387, 697
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 2 cut(s) 199, 410
AjiI CACGTC 1 cut(s) 32
AjnI CCWGG 1 cut(s) 363
AleI CACNNNNGTG 1 cut(s) 51
Alw26I GTCTC 2 cut(s) 284, 905
Ama87I CYCGRG 1 cut(s) 241
AoxI GGCC 2 cut(s) 318, 535
ApeKI GCWGC 1 cut(s) 922
ApoI RAATTY 4 cut(s) 734, 809, 863, 966
AspS9I GGNCC 1 cut(s) 318
AsuC2I CCSGG 2 cut(s) 242, 243
AvaI CYCGRG 1 cut(s) 241
BaeGI GKGCMC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 934
BccI CCATC 1 cut(s) 649
BceAI ACGGC 2 cut(s) 374, 1015
BciT130I CCWGG 1 cut(s) 365
BcnI CCSGG 2 cut(s) 242, 243
BcoDI GTCTC 2 cut(s) 284, 905
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 1 cut(s) 955
BfuAI ACCTGC 1 cut(s) 587
BisI GCNGC 1 cut(s) 923
BlsI GCNGC 1 cut(s) 924
Bme1390I CCNGG 3 cut(s) 242, 243, 365
BmeT110I CYCGRG 1 cut(s) 241
BmgBI CACGTC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 362
BmrFI CCNGG 3 cut(s) 242, 243, 365
BmsI GCATC 1 cut(s) 244
BoxI GACNNNNGTC 1 cut(s) 597
Bpu10I CCTNAGC 1 cut(s) 995
BpuMI CCSGG 2 cut(s) 242, 243
BsaHI GRCGYC 1 cut(s) 639
BsaJI CCNNGG 3 cut(s) 241, 381, 933
Bsc4I CCNNNNNNNGG 4 cut(s) 346, 386, 387, 697
Bse3DI GCAATG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 3 cut(s) 241, 381, 933
BseGI GGATG 2 cut(s) 398, 676
BseLI CCNNNNNNNGG 4 cut(s) 346, 386, 387, 697
BseMI GCAATG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 872
BseSI GKGCMC 1 cut(s) 44
BseXI GCAGC 1 cut(s) 934
BshFI GGCC 2 cut(s) 320, 537
BshNI GGYRCC 1 cut(s) 360
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 3 cut(s) 32, 449, 650
BslI CCNNNNNNNGG 4 cut(s) 346, 386, 387, 697
BsmAI GTCTC 2 cut(s) 284, 905
BsmFI GGGAC 3 cut(s) 32, 449, 650
BsmI GAATGC 2 cut(s) 611, 729
BsnI GGCC 2 cut(s) 320, 537
BsoBI CYCGRG 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 44
Bsp1407I TGTACA 1 cut(s) 467
BspACI CCGC 3 cut(s) 257, 634, 691
BspANI GGCC 2 cut(s) 320, 537
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 1 cut(s) 362
BspMAI CTGCAG 1 cut(s) 959
BspMI ACCTGC 1 cut(s) 587
BspQI GCTCTTC 1 cut(s) 560
BspT107I GGYRCC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 219
BsrGI TGTACA 1 cut(s) 467
BssECI CCNNGG 3 cut(s) 241, 381, 933
BssNI GRCGYC 1 cut(s) 639
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 3 cut(s) 53, 109, 934
Bst6I CTCTTC 3 cut(s) 172, 560, 575
BstACI GRCGYC 1 cut(s) 639
BstAUI TGTACA 1 cut(s) 467
BstDEI CTNAG 3 cut(s) 825, 852, 995
BstDSI CCRYGG 2 cut(s) 381, 933
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 398, 676
BstMAI GTCTC 2 cut(s) 284, 905
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 365
BstNSI RCATGY 1 cut(s) 697
BstPAI GACNNNNGTC 1 cut(s) 597
BstSCI CCNGG 3 cut(s) 240, 241, 363
BstSFI CTRYAG 1 cut(s) 955
BstSLI GKGCMC 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 934
BstXI CCANNNNNNTGG 1 cut(s) 739
BsuRI GGCC 2 cut(s) 320, 537
BtgI CCRYGG 2 cut(s) 381, 933
BtgZI GCGATG 1 cut(s) 138
BtrI CACGTC 1 cut(s) 32
BtsCI GGATG 2 cut(s) 398, 676
BtsI GCAGTG 1 cut(s) 964
BtsIMutI CAGTG 1 cut(s) 964
BveI ACCTGC 1 cut(s) 587
CciI TCATGA 1 cut(s) 601
Cfr13I GGNCC 1 cut(s) 318
Cfr9I CCCGGG 1 cut(s) 241
CseI GACGC 1 cut(s) 602
Csp6I GTAC 1 cut(s) 468
CviAII CATG 6 cut(s) 503, 556, 602, 652, 694, 895
CviJI RGCY 3 cut(s) 320, 537, 925
CviKI_1 RGCY 3 cut(s) 320, 537, 925
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 3 cut(s) 825, 852, 995
Eam1104I CTCTTC 3 cut(s) 172, 560, 575
EarI CTCTTC 3 cut(s) 172, 560, 575
Eco57I CTGAAG 1 cut(s) 755
Eco88I CYCGRG 1 cut(s) 241
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 363
FaeI CATG 6 cut(s) 506, 559, 605, 655, 697, 898
FalI AAGNNNNNCTT 2 cut(s) 910, 942
FaqI GGGAC 3 cut(s) 32, 449, 650
FatI CATG 6 cut(s) 502, 555, 601, 651, 693, 894
FauI CCCGC 1 cut(s) 627
Fnu4HI GCNGC 1 cut(s) 923
FokI GGATG 2 cut(s) 405, 683
Fsp4HI GCNGC 1 cut(s) 923
FspBI CTAG 1 cut(s) 71
GluI GCNGC 1 cut(s) 923
HaeIII GGCC 2 cut(s) 320, 537
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 602
Hin1I GRCGYC 1 cut(s) 639
Hin1II CATG 6 cut(s) 506, 559, 605, 655, 697, 898
HincII GTYRAC 3 cut(s) 156, 262, 528
HindII GTYRAC 3 cut(s) 156, 262, 528
HinfI GANTC 1 cut(s) 621
HpaII CCGG 1 cut(s) 242
Hpy166II GTNNAC 7 cut(s) 156, 187, 262, 470, 514, 528, 643
Hpy188I TCNGA 1 cut(s) 626
Hpy188III TCNNGA 4 cut(s) 199, 602, 618, 773
Hpy8I GTNNAC 7 cut(s) 156, 187, 262, 470, 514, 528, 643
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 125, 365, 936
HpyCH4III ACNGT 3 cut(s) 53, 109, 934
HpyCH4IV ACGT 4 cut(s) 31, 264, 438, 639
HpyCH4V TGCA 7 cut(s) 212, 502, 609, 664, 727, 945, 957
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 3 cut(s) 825, 852, 995
HpySE526I ACGT 4 cut(s) 31, 264, 438, 639
Hsp92I GRCGYC 1 cut(s) 639
Hsp92II CATG 6 cut(s) 506, 559, 605, 655, 697, 898
LguI GCTCTTC 1 cut(s) 560
LpnPI CCDG 8 cut(s) 255, 350, 377, 462, 486, 582, 595, 758
Lsp1109I GCAGC 1 cut(s) 934
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 71
MaeII ACGT 4 cut(s) 31, 264, 438, 639
MaeIII GTNAC 1 cut(s) 1015
MboII GAAGA 4 cut(s) 189, 398, 577, 592
MfeI CAATTG 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 44
MmeI TCCRAC 3 cut(s) 540, 648, 822
MnlI CCTC 9 cut(s) 70, 175, 331, 340, 361, 527, 567, 850, 893
MseI TTAA 1 cut(s) 876
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 3 cut(s) 242, 243, 365
MunI CAATTG 1 cut(s) 144
Mva1269I GAATGC 2 cut(s) 611, 729
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 2 cut(s) 242, 243
NlaIII CATG 6 cut(s) 506, 559, 605, 655, 697, 898
NlaIV GGNNCC 1 cut(s) 362
NmuCI GTSAC 1 cut(s) 1015
NspI RCATGY 1 cut(s) 697
OliI CACNNNNGTG 1 cut(s) 51
PagI TCATGA 1 cut(s) 601
PciSI GCTCTTC 1 cut(s) 560
PctI GAATGC 2 cut(s) 611, 729
PfeI GAWTC 1 cut(s) 621
PkrI GCNGC 1 cut(s) 924
PshAI GACNNNNGTC 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 362
PspPI GGNCC 1 cut(s) 318
PstI CTGCAG 1 cut(s) 959
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 560
SaqAI TTAA 1 cut(s) 876
SatI GCNGC 1 cut(s) 923
Sau96I GGNCC 1 cut(s) 318
ScrFI CCNGG 3 cut(s) 242, 243, 365
SduI GDGCHC 1 cut(s) 44
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 955
SmaI CCCGGG 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 51
SsiI CCGC 3 cut(s) 257, 634, 691
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 3 cut(s) 240, 241, 363
TaaI ACNGT 3 cut(s) 53, 109, 934
TaiI ACGT 4 cut(s) 34, 267, 441, 642
TaqI TCGA 3 cut(s) 617, 680, 721
TatI WGTACW 1 cut(s) 467
TfiI GAWTC 1 cut(s) 621
Tru1I TTAA 1 cut(s) 876
Tru9I TTAA 1 cut(s) 876
TscAI CASTG 1 cut(s) 964
TseFI GTSAC 1 cut(s) 1015
TseI GCWGC 1 cut(s) 922
Tsp45I GTSAC 1 cut(s) 1015
TspDTI ATGAA 5 cut(s) 519, 618, 698, 719, 959
TspGWI ACGGA 1 cut(s) 643
TspMI CCCGGG 1 cut(s) 241
TspRI CASTG 1 cut(s) 964
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 4 cut(s) 734, 809, 863, 966
XceI RCATGY 1 cut(s) 697
XmaI CCCGGG 1 cut(s) 241
XspI CTAG 1 cut(s) 71
ZraI GACGTC 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.