Rh2AG354600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000124
Physical Location & Seq
Forward (+)
52317199 .. 52318136
938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG354600.1

Sequence Viewer

Length: 780 bp
ATGGAGGGTGTGAAACGTCACCAGGAGGAAGGAACTCTCGTCGTGGGGGGATGTTTGATATTTCTTCAACTTCTTTACCTTGACAAGGTGGGGGACGTTCTTACACCTGATAAGGACGACCTTTGTCCACCTGTAATGTATTGGAACACTAATAAGGTGCAGAAAATTGTGAACAAGATCAGGTTGACGGGAGGCCACAAAAGTCCTACTGTCATGTTGGAGAAGAGCAAGAGGACGAAGAGATTACAAGACGCAGGTCATGAATGCGGGGTTTCGGGATTCGGACTGAATGGGGACGTCCACAAGACCATGATGGACTTGCAGTTGGATGTGAGTTCGATGAAGGACCGCATGTGGGATATGAAATGGGAAGTAAGTCGAATGCAACCCAAATTCTTGGATTTTACAAAGGGGTTAGAATTGGCACTTGAGGAACTGAAACAAACATTTTCACAAGTCAAAAGTGAATTTTACACAATCTCTAAGCAACAATTAGGGTTGGAAAGGATTAAGGAGGAGAAATTCCGGGTAATGGACAATGTGGTCAACGGCATGGGAGGGATTGACGAGACAAAAAGGCAGCCTTCCACCGTGGGAATGTGCAACGATGACTGCAGTGGAGAAACTCATTTGCCAAATAACAAGGGTCACAGAAGCGTGAGGGAACATGTGAGAAAGGGACTTCGGTCGGAGATGTCATGCAGCCCAACAGGAAAATACAGCATGGAAAGGCAGGAAAATGTTAAAACCGGAGACATAATCCGAAAAGCTTCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

259

Amino Acids

29.46

Weight (kDa)

8.91

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 542
AatII GACGTC 1 cut(s) 300
Acc36I ACCTGC 1 cut(s) 245
AciI CCGC 2 cut(s) 267, 349
AcsI RAATTY 3 cut(s) 392, 467, 521
AcyI GRCGYC 1 cut(s) 297
AfiI CCNNNNNNNGG 3 cut(s) 85, 355, 532
AflIII ACRYGT 1 cut(s) 667
AgsI TTSAA 1 cut(s) 68
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 1 cut(s) 770
AluI AGCT 1 cut(s) 770
Alw26I GTCTC 2 cut(s) 563, 747
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 2 cut(s) 580, 702
ApoI RAATTY 3 cut(s) 392, 467, 521
Asp700I GAANNNNTTC 1 cut(s) 769
AspS9I GGNCC 1 cut(s) 346
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 1 cut(s) 11
AsuII TTCGAA 1 cut(s) 773
AvaII GGWCC 1 cut(s) 346
BbvI GCAGC 2 cut(s) 592, 714
BccI CCATC 1 cut(s) 307
BceAI ACGGC 1 cut(s) 565
BciT130I CCWGG 1 cut(s) 23
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 2 cut(s) 563, 747
BfmI CTRYAG 1 cut(s) 613
BfuAI ACCTGC 1 cut(s) 245
BisI GCNGC 2 cut(s) 581, 703
BlsI GCNGC 2 cut(s) 582, 704
Bme1390I CCNGG 2 cut(s) 23, 527
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 346
BmrFI CCNGG 2 cut(s) 23, 527
BoxI GACNNNNGTC 3 cut(s) 123, 255, 685
Bpu14I TTCGAA 1 cut(s) 773
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 527
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 591
BsaWI WCCGGW 1 cut(s) 749
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 355, 532
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 2 cut(s) 56, 334
BseLI CCNNNNNNNGG 3 cut(s) 85, 355, 532
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 2 cut(s) 592, 714
BsgI GTGCAG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 689
BshFI GGCC 1 cut(s) 195
BsiEI CGRYCG 1 cut(s) 689
BsiSI CCGG 2 cut(s) 526, 750
BslFI GGGAC 3 cut(s) 107, 308, 693
BslI CCNNNNNNNGG 3 cut(s) 85, 355, 532
BsmAI GTCTC 2 cut(s) 563, 747
BsmFI GGGAC 3 cut(s) 107, 308, 693
BsmI GAATGC 2 cut(s) 269, 387
BsnI GGCC 1 cut(s) 195
Bsp119I TTCGAA 1 cut(s) 773
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 2 cut(s) 267, 349
BspANI GGCC 1 cut(s) 195
BspHI TCATGA 1 cut(s) 259
BspMAI CTGCAG 1 cut(s) 617
BspMI ACCTGC 1 cut(s) 245
BspQI GCTCTTC 1 cut(s) 218
BspT104I TTCGAA 1 cut(s) 773
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 1 cut(s) 177
BssNI GRCGYC 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 211, 592
Bst6I CTCTTC 2 cut(s) 218, 233
BstACI GRCGYC 1 cut(s) 297
BstBI TTCGAA 1 cut(s) 773
BstDEI CTNAG 1 cut(s) 483
BstDSI CCRYGG 1 cut(s) 591
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 2 cut(s) 56, 334
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 2 cut(s) 563, 747
BstMBI GATC 1 cut(s) 177
BstMCI CGRYCG 1 cut(s) 689
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 2 cut(s) 355, 671
BstPAI GACNNNNGTC 3 cut(s) 123, 255, 685
BstSCI CCNGG 2 cut(s) 21, 525
BstSFI CTRYAG 1 cut(s) 613
BstV1I GCAGC 2 cut(s) 592, 714
BstXI CCANNNNNNTGG 1 cut(s) 397
BsuRI GGCC 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 2 cut(s) 56, 334
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 1 cut(s) 622
BveI ACCTGC 1 cut(s) 245
CciI TCATGA 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 346
CseI GACGC 1 cut(s) 260
CviAII CATG 8 cut(s) 214, 260, 310, 352, 553, 668, 699, 724
CviJI RGCY 4 cut(s) 195, 583, 705, 770
CviKI_1 RGCY 4 cut(s) 195, 583, 705, 770
DdeI CTNAG 1 cut(s) 483
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
DrdI GACNNNNNNGTC 1 cut(s) 542
DseDI GACNNNNNNGTC 1 cut(s) 542
Eam1104I CTCTTC 2 cut(s) 218, 233
EarI CTCTTC 2 cut(s) 218, 233
Eco47I GGWCC 1 cut(s) 346
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 21
FaeI CATG 8 cut(s) 217, 263, 313, 355, 556, 671, 702, 727
FalI AAGNNNNNCTT 2 cut(s) 568, 600
FaqI GGGAC 3 cut(s) 107, 308, 693
FatI CATG 8 cut(s) 213, 259, 309, 351, 552, 667, 698, 723
FauI CCCGC 1 cut(s) 260
Fnu4HI GCNGC 2 cut(s) 581, 703
FokI GGATG 2 cut(s) 63, 341
Fsp4HI GCNGC 2 cut(s) 581, 703
GluI GCNGC 2 cut(s) 581, 703
HaeIII GGCC 1 cut(s) 195
HapII CCGG 2 cut(s) 526, 750
HgaI GACGC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 8 cut(s) 217, 263, 313, 355, 556, 671, 702, 727
HincII GTYRAC 2 cut(s) 186, 547
HindII GTYRAC 2 cut(s) 186, 547
HindIII AAGCTT 1 cut(s) 768
HinfI GANTC 1 cut(s) 279
HpaII CCGG 2 cut(s) 526, 750
HphI GGTGA 1 cut(s) 11
Hpy166II GTNNAC 5 cut(s) 128, 172, 186, 301, 547
Hpy188I TCNGA 3 cut(s) 284, 691, 764
Hpy188III TCNNGA 2 cut(s) 260, 276
Hpy8I GTNNAC 5 cut(s) 128, 172, 186, 301, 547
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 3 cut(s) 23, 337, 594
HpyCH4III ACNGT 2 cut(s) 211, 592
HpyCH4IV ACGT 3 cut(s) 16, 96, 297
HpyCH4V TGCA 6 cut(s) 160, 322, 385, 603, 615, 702
HpyF3I CTNAG 1 cut(s) 483
HpySE526I ACGT 3 cut(s) 16, 96, 297
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 8 cut(s) 217, 263, 313, 355, 556, 671, 702, 727
Kzo9I GATC 1 cut(s) 177
LguI GCTCTTC 1 cut(s) 218
Lsp1109I GCAGC 2 cut(s) 592, 714
MaeII ACGT 3 cut(s) 16, 96, 297
MaeIII GTNAC 2 cut(s) 17, 647
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 3 cut(s) 56, 235, 250
MluCI AATT 6 cut(s) 165, 392, 419, 467, 491, 521
MmeI TCCRAC 4 cut(s) 198, 306, 480, 669
MnlI CCTC 7 cut(s) 19, 185, 225, 424, 508, 551, 654
MroXI GAANNNNTTC 1 cut(s) 769
MseI TTAA 2 cut(s) 510, 744
MspI CCGG 2 cut(s) 526, 750
MspR9I CCNGG 2 cut(s) 23, 527
Mva1269I GAATGC 2 cut(s) 269, 387
MvaI CCWGG 1 cut(s) 23
NciI CCSGG 1 cut(s) 527
NdeII GATC 1 cut(s) 177
NlaIII CATG 8 cut(s) 217, 263, 313, 355, 556, 671, 702, 727
NmuCI GTSAC 2 cut(s) 17, 647
NspI RCATGY 2 cut(s) 355, 671
NspV TTCGAA 1 cut(s) 773
PagI TCATGA 1 cut(s) 259
PciI ACATGT 1 cut(s) 667
PciSI GCTCTTC 1 cut(s) 218
PctI GAATGC 2 cut(s) 269, 387
PdmI GAANNNNTTC 1 cut(s) 769
PfeI GAWTC 1 cut(s) 279
PkrI GCNGC 2 cut(s) 582, 704
PscI ACATGT 1 cut(s) 667
PshAI GACNNNNGTC 3 cut(s) 123, 255, 685
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspPI GGNCC 1 cut(s) 346
PstI CTGCAG 1 cut(s) 617
SapI GCTCTTC 1 cut(s) 218
SaqAI TTAA 2 cut(s) 510, 744
SatI GCNGC 2 cut(s) 581, 703
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 346
ScrFI CCNGG 2 cut(s) 23, 527
SfcI CTRYAG 1 cut(s) 613
SfuI TTCGAA 1 cut(s) 773
SinI GGWCC 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 6 cut(s) 165, 392, 419, 467, 491, 521
SsiI CCGC 2 cut(s) 267, 349
StyD4I CCNGG 2 cut(s) 21, 525
TaaI ACNGT 2 cut(s) 211, 592
TaiI ACGT 3 cut(s) 19, 99, 300
TaqI TCGA 3 cut(s) 338, 379, 773
TaqII GACCGA 1 cut(s) 675
TasI AATT 6 cut(s) 165, 392, 419, 467, 491, 521
TfiI GAWTC 1 cut(s) 279
Tru1I TTAA 2 cut(s) 510, 744
Tru9I TTAA 2 cut(s) 510, 744
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 2 cut(s) 17, 647
TseI GCWGC 2 cut(s) 580, 702
Tsp45I GTSAC 2 cut(s) 17, 647
TspDTI ATGAA 3 cut(s) 276, 356, 377
TspRI CASTG 1 cut(s) 622
VpaK11BI GGWCC 1 cut(s) 346
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 3 cut(s) 392, 467, 521
XceI RCATGY 2 cut(s) 355, 671
XmnI GAANNNNTTC 1 cut(s) 769
ZraI GACGTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.