Rh6CG205300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000124
Physical Location & Seq
Forward (+)
34236123 .. 34243107
6985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG205300.1

Sequence Viewer

Length: 624 bp
ATGAAGGACGACAACCAACCGATCGCTGATCTGTATTTGGACGGATTACCGGACGTTCCCTACTTCGTCCACATTACACCACAGGGATCGGACAAGTGGTTTGATGGTCATTGGACCACTTTTGTTCACCGTGTCAACAATGGTCAAGGACGGATGGTGTTGTGGTTCCATTACAGAGGGGATATGACCTTCATCGTACGCCGCTTCGATGTTAACGGTCGGTTGATGCTTGGAGCTCCCAAACCGCCCTTTGGATTTGTGGTGGACCAGTCAATGGAACTGATTGGTATTTTGGACTCCTTCATGTCGGACATTTGGGATCGGAAAGTAACTGTGAGAGGGATTCTGTCAATGAATCTCAGCCAAGCAGGCCTATCTAGAACTCTGCCCGATGTGAAGACAGAGGATGAAGCCCCAATGGAAGAAGAAGGCGCAGTTGGGGCCGATGTGGGGGGGGGGCAGCTATCTGAACCGGATATGGGAGTAATGGGACCATATGGTGAGCTTCCTCAAAGGGAACGCGTCCACCCTAGATGGGCTGGATTCCGCTCTGGCACTTGTAAGATTCAACGATCTCACGGATTAAGCTTTGACAATCCAGGTTTCAGATTTTTAGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.35

Weight (kDa)

5.31

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 274
AccBSI CCGCTC 1 cut(s) 549
AccII CGCG 1 cut(s) 522
AciI CCGC 3 cut(s) 202, 245, 547
AclWI GGATC 2 cut(s) 94, 327
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 5 cut(s) 251, 274, 450, 479, 535
AflIII ACRYGT 1 cut(s) 520
AgsI TTSAA 1 cut(s) 569
AjnI CCWGG 1 cut(s) 598
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AluBI AGCT 4 cut(s) 236, 463, 505, 588
AluI AGCT 4 cut(s) 236, 463, 505, 588
Alw21I GWGCWC 1 cut(s) 238
AlwI GGATC 2 cut(s) 94, 327
AoxI GGCC 2 cut(s) 370, 441
ApeKI GCWGC 1 cut(s) 460
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AspLEI GCGC 1 cut(s) 434
AspS9I GGNCC 4 cut(s) 114, 265, 441, 491
AsuHPI GGTGA 2 cut(s) 119, 512
AvaII GGWCC 3 cut(s) 114, 265, 491
BanII GRGCYC 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 472
BccI CCATC 3 cut(s) 98, 148, 528
BciT130I CCWGG 1 cut(s) 600
BfaI CTAG 2 cut(s) 378, 531
BglI GCCNNNNNGGC 1 cut(s) 369
BisI GCNGC 2 cut(s) 202, 461
BlsI GCNGC 2 cut(s) 203, 462
Bme1390I CCNGG 1 cut(s) 600
Bme18I GGWCC 3 cut(s) 114, 265, 491
BmgT120I GGNCC 4 cut(s) 114, 265, 441, 491
BmiI GGNNCC 3 cut(s) 167, 442, 492
BmrFI CCNGG 1 cut(s) 600
BmsI GCATC 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 404
BsaWI WCCGGW 2 cut(s) 49, 472
Bsc4I CCNNNNNNNGG 5 cut(s) 251, 274, 450, 479, 535
Bse1I ACTGG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 600
BseGI GGATG 2 cut(s) 159, 412
BseLI CCNNNNNNNGG 5 cut(s) 251, 274, 450, 479, 535
BseMII CTCAG 1 cut(s) 373
BseNI ACTGG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 472
Bsh1236I CGCG 1 cut(s) 522
Bsh1285I CGRYCG 2 cut(s) 24, 220
BshFI GGCC 2 cut(s) 372, 443
BsiEI CGRYCG 2 cut(s) 24, 220
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 2 cut(s) 50, 473
BsiWI CGTACG 1 cut(s) 196
BslFI GGGAC 1 cut(s) 504
BslI CCNNNNNNNGG 5 cut(s) 251, 274, 450, 479, 535
BsmFI GGGAC 1 cut(s) 504
BsnI GGCC 2 cut(s) 372, 443
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 5 cut(s) 21, 28, 86, 319, 572
BspACI CCGC 3 cut(s) 202, 245, 547
BspANI GGCC 2 cut(s) 372, 443
BspCNI CTCAG 1 cut(s) 372
BspFNI CGCG 1 cut(s) 522
BspLI GGNNCC 3 cut(s) 167, 442, 492
BspPI GGATC 2 cut(s) 94, 327
BsrBI CCGCTC 1 cut(s) 549
BsrI ACTGG 1 cut(s) 268
BssMI GATC 5 cut(s) 21, 28, 86, 319, 572
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 3 cut(s) 131, 218, 334
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 1 cut(s) 359
BstF5I GGATG 2 cut(s) 159, 412
BstFNI CGCG 1 cut(s) 522
BstHHI GCGC 1 cut(s) 434
BstKTI GATC 5 cut(s) 24, 31, 89, 322, 575
BstMBI GATC 5 cut(s) 21, 28, 86, 319, 572
BstMCI CGRYCG 2 cut(s) 24, 220
BstMWI GCNNNNNNNGC 2 cut(s) 369, 440
BstNI CCWGG 1 cut(s) 600
BstSCI CCNGG 1 cut(s) 598
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 1 cut(s) 404
BsuRI GGCC 2 cut(s) 372, 443
BtsCI GGATG 2 cut(s) 159, 412
Cac8I GCNNGC 1 cut(s) 370
CfoI GCGC 1 cut(s) 434
Cfr13I GGNCC 4 cut(s) 114, 265, 441, 491
CseI GACGC 1 cut(s) 511
Csp6I GTAC 1 cut(s) 197
CviAII CATG 1 cut(s) 304
CviJI RGCY 9 cut(s) 236, 363, 372, 413, 443, 463, 505, 539, 588
CviKI_1 RGCY 9 cut(s) 236, 363, 372, 413, 443, 463, 505, 539, 588
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 1 cut(s) 359
DpnI GATC 5 cut(s) 23, 30, 88, 321, 574
DpnII GATC 5 cut(s) 21, 28, 86, 319, 572
Ecl136II GAGCTC 1 cut(s) 236
Eco147I AGGCCT 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 3 cut(s) 114, 265, 491
Eco53kI GAGCTC 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 238
FaeI CATG 1 cut(s) 307
FaiI YATR 6 cut(s) 185, 305, 479, 496, 498, 620
FaqI GGGAC 1 cut(s) 504
FatI CATG 1 cut(s) 303
FauNDI CATATG 1 cut(s) 496
Fnu4HI GCNGC 2 cut(s) 202, 461
FokI GGATG 2 cut(s) 166, 419
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 2 cut(s) 202, 461
FspBI CTAG 2 cut(s) 378, 531
GlaI GCGC 1 cut(s) 433
GluI GCNGC 2 cut(s) 202, 461
HaeIII GGCC 2 cut(s) 372, 443
HapII CCGG 2 cut(s) 50, 473
HgaI GACGC 1 cut(s) 511
HhaI GCGC 1 cut(s) 434
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HincII GTYRAC 2 cut(s) 136, 214
HindII GTYRAC 2 cut(s) 136, 214
HindIII AAGCTT 1 cut(s) 586
HinfI GANTC 5 cut(s) 296, 343, 355, 543, 565
HpaI GTTAAC 1 cut(s) 214
HpaII CCGG 2 cut(s) 50, 473
HphI GGTGA 2 cut(s) 119, 512
Hpy166II GTNNAC 6 cut(s) 70, 127, 136, 214, 265, 526
Hpy188I TCNGA 5 cut(s) 91, 310, 324, 469, 608
Hpy188III TCNNGA 1 cut(s) 378
Hpy8I GTNNAC 6 cut(s) 70, 127, 136, 214, 265, 526
HpyAV CCTTC 3 cut(s) 199, 310, 422
HpyCH4III ACNGT 3 cut(s) 131, 218, 334
HpyCH4IV ACGT 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 2 cut(s) 369, 440
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 1 cut(s) 432
KspAI GTTAAC 1 cut(s) 214
Kzo9I GATC 5 cut(s) 21, 28, 86, 319, 572
LmnI GCTCC 2 cut(s) 233, 241
LpnPI CCDG 9 cut(s) 63, 68, 281, 354, 486, 525, 537, 585, 612
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 1 cut(s) 216
MaeI CTAG 2 cut(s) 378, 531
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 328
MalI GATC 5 cut(s) 23, 30, 88, 321, 574
MbiI CCGCTC 1 cut(s) 549
MboI GATC 5 cut(s) 21, 28, 86, 319, 572
MboII GAAGA 3 cut(s) 409, 434, 437
MhlI GDGCHC 1 cut(s) 238
MluI ACGCGT 1 cut(s) 520
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 4 cut(s) 170, 332, 397, 519
MseI TTAA 2 cut(s) 213, 584
MspI CCGG 2 cut(s) 50, 473
MspR9I CCNGG 1 cut(s) 600
MvaI CCWGG 1 cut(s) 600
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 2 cut(s) 369, 440
NdeI CATATG 1 cut(s) 496
NdeII GATC 5 cut(s) 21, 28, 86, 319, 572
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 3 cut(s) 167, 442, 492
PceI AGGCCT 1 cut(s) 372
PfeI GAWTC 4 cut(s) 343, 355, 543, 565
Pfl23II CGTACG 1 cut(s) 196
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 2 cut(s) 203, 462
Ple19I CGATCG 1 cut(s) 24
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Psp124BI GAGCTC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 598
PspGI CCWGG 1 cut(s) 598
PspLI CGTACG 1 cut(s) 196
PspN4I GGNNCC 3 cut(s) 167, 442, 492
PspPI GGNCC 4 cut(s) 114, 265, 441, 491
PvuI CGATCG 1 cut(s) 24
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SacI GAGCTC 1 cut(s) 238
SaqAI TTAA 2 cut(s) 213, 584
SatI GCNGC 2 cut(s) 202, 461
Sau3AI GATC 5 cut(s) 21, 28, 86, 319, 572
Sau96I GGNCC 4 cut(s) 114, 265, 441, 491
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 600
SduI GDGCHC 1 cut(s) 238
SetI ASST 7 cut(s) 57, 191, 238, 465, 507, 590, 604
SfaNI GCATC 1 cut(s) 216
SinI GGWCC 3 cut(s) 114, 265, 491
SseBI AGGCCT 1 cut(s) 372
SsiI CCGC 3 cut(s) 202, 245, 547
SspMI CTAG 2 cut(s) 378, 531
SstI GAGCTC 1 cut(s) 238
StuI AGGCCT 1 cut(s) 372
StyD4I CCNGG 1 cut(s) 598
TaaI ACNGT 3 cut(s) 131, 218, 334
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 207
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 4 cut(s) 343, 355, 543, 565
Tru1I TTAA 2 cut(s) 213, 584
Tru9I TTAA 2 cut(s) 213, 584
TseI GCWGC 1 cut(s) 460
TspDTI ATGAA 5 cut(s) 17, 181, 292, 368, 423
TspGWI ACGGA 3 cut(s) 57, 166, 594
Van91I CCANNNNNTGG 1 cut(s) 274
VpaK11BI GGWCC 3 cut(s) 114, 265, 491
XbaI TCTAGA 1 cut(s) 377
XspI CTAG 2 cut(s) 378, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.