Rh2CG300000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000124
Physical Location & Seq
Forward (+)
34794370 .. 34795044
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG300000.1

Sequence Viewer

Length: 579 bp
ATGGATCACGGAAGTGCTCATACTATGTCAAGATTATGCGACAAGGGCAGGACCATTGGCTGGGTTCTGGTTGGGAGAGTTTTTTGGACAATGTCCGAGCCGTTCACGGTCGAATGGCTACTCCAGTATAGAGGCCGCATGAAGTTCTTTGTGCGCAGGTACGATGTGAACGGGGCTTTGATGTACGCTTCTCCCCGACCCCGATTCGGTTGCCCACCTCCCAAATCACCGACTATTTCAGGGGTATTCGACGGCTTCGTTTCGGACGTTTGGGATGACAGCATCATTGTGCCTGTTGTACCAAGAGGTGTTGTGCATGATAGACTGATTGCGGATGGGGCCCCTGCTCGGTGTGAACTCCAATGGGAGACGGTGCCTCCATGCTTCCAGCAGATCGACATTACAGGAGGACGTAGGGAGCTGAGGTTCGCTTGTGCATGGGAACGATTTCACTTCGAGAATCGGTTGGACAAACGTCGGTGCTGTATGTTCACCTACCTAGGAAATCTACGTTTCTCCGTTCTTGTGTTCGACACTGTTCGAGGGAACTTGTGCACTACGCCGCTGCAAGACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

22.14

Weight (kDa)

8.88

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000124)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10992 FvH4_2g25150 FvH4_2g27910 FvH4_2g27931 FvH4_4g09443 FvH4_4g09490 FvH4_4g15990 FvH4_4g15991 FvH4_6g07180 FvH4_6g40320 FvH4_7g10222 FvH4_7g10251
rosa_chinensis RchiOBHm_Chr2g0155611
rosa_laevigata RLG00000009253 RLG00000009254 RLG00000011848 RLG00000017301 RLG00000017302 RLG00000034909
rosa_multiflora Rmu_co8063658.1_g000001 Rmu_co8240443.1_g000001 Rmu_co8264451.1_g000001 Rmu_co8381937.1_g000001 Rmu_co8419903.1_g000001 Rmu_co8513405.1_g000002 Rmu_co8522915.1_g000001 Rmu_co8522915.1_g000004 Rmu_sc0000279.1_g000024 Rmu_sc0000279.1_g000048 Rmu_sc0000642.1_g000017 Rmu_sc0002045.1_g000015 Rmu_sc0002045.1_g000018 Rmu_sc0002045.1_g000023 Rmu_sc0002045.1_g000028 Rmu_sc0003047.1_g000008 Rmu_sc0003179.1_g000019 Rmu_sc0003179.1_g000020 Rmu_sc0003179.1_g000022 Rmu_sc0003179.1_g000023 Rmu_sc0003422.1_g000011 Rmu_sc0004999.1_g000014 Rmu_sc0005712.1_g000018 Rmu_sc0005712.1_g000023 Rmu_sc0006198.1_g000019 Rmu_sc0006373.1_g000005 Rmu_sc0006514.1_g000028 Rmu_sc0006514.1_g000031 Rmu_sc0007367.1_g000010 Rmu_sc0011475.1_g000002 Rmu_sc0025304.1_g000001 Rmu_ssc0000161.1_g000030 Rmu_ssc0000161.1_g000032 Rmu_ssc0000387.1_g000018
rosa_roxburghii Rroxscaffold_1G00031090 Rroxscaffold_1G00032770 Rroxscaffold_1G00068950 Rroxscaffold_1G00069000 Rroxscaffold_1G00069010 Rroxscaffold_2G00129060 Rroxscaffold_2G00129100 Rroxscaffold_4G00309310 Rroxscaffold_4G00309320 Rroxscaffold_5G00350620 Rroxscaffold_5G00350630 Rroxscaffold_7G00162650 Rroxscaffold_7G00162660 Rroxscaffold_7G00162710
rosa_rugosa Rorug02G0564700 Rorug02G0564700 Rorug03G0343100 Rorug04G0189700 Rorug05G0102800 Rorug05G0102900 Rorug05G0103000 Rorug05G0106500 Rorug05G0106600 Rorug05G0106700 Rorug05G0252800 Rorug07G0182100 Rorug07G0283500 Rorug07G0283600
rosa_samantha Rh1AG004000 Rh1AG004100 Rh1AG004200 Rh1AG004400 Rh1AG004500 Rh1AG004600 Rh1AG004800 Rh1AG004900 Rh1AG005300 Rh1AG007000 Rh1AG115000 Rh1CG049400 Rh1CG055400 Rh1CG111000 Rh1DG053600 Rh1DG053700 Rh1DG059300 Rh1DG119700 Rh1DG177100 Rh1DG177200 Rh2AG353800 Rh2AG354000 Rh2AG354100 Rh2AG354300 Rh2AG354400 Rh2AG354500 Rh2AG354600 Rh2AG354700 Rh2AG642300 Rh2AG642400 Rh2AG642500 Rh2BG336500 Rh2BG336600 Rh2BG336700 Rh2BG336800 Rh2BG336900 Rh2CG299900 Rh2CG300000 Rh2CG300100 Rh2DG337000 Rh2DG337100 Rh3AG246600 Rh3BG121900 Rh3BG122300 Rh3BG122600 Rh3BG122700 Rh3DG304800 Rh3DG304900 Rh4AG148800 Rh4AG249000 Rh4AG249100 Rh4AG249200 Rh4BG182700 Rh4BG182800 Rh4BG182900 Rh4BG254400 Rh4BG254500 Rh4BG254600 Rh4CG155500 Rh4CG155700 Rh4DG057900 Rh4DG058000 Rh4DG058100 Rh4DG058200 Rh4DG129100 Rh5AG364500 Rh5AG364600 Rh5AG364800 Rh5AG365300 Rh5CG363700 Rh5CG497600 Rh5DG239500 Rh5DG239600 Rh6AG173500 Rh6AG175400 Rh6BG075900 Rh6BG076300 Rh6BG076400 Rh6BG076500 Rh6BG076600 Rh6CG151000 Rh6CG151200 Rh6CG151300 Rh6CG151400 Rh6CG205200 Rh6CG205300 Rh6CG419700 Rh6CG419900 Rh6CG420100 Rh6DG498700 Rh6DG498800 Rh7AG329000 Rh7AG329100 Rh7AG329300 Rh7AG329400 Rh7AG353000 Rh7AG353100 Rh7AG353300 Rh7AG353400 Rh7AG353500 Rh7CG346400 Rh7CG346500 Rh7CG346700 Rh7CG370800 Rh7CG370900 Rh7CG371000 Rh7CG371100 Rh7DG325000 Rh7DG325100 Rh7DG325200 Rh7DG325300 Rh7DG353100 Rh7DG353200 Rh7DG353300 Rh7DG363500 Rh7DG364000
rosa_wichuraiana Rw0G002290 Rw0G012780 Rw1G000260 Rw1G000270 Rw1G010400 Rw1G010410 Rw1G010420 Rw1G010430 Rw1G010440 Rw2G003210 Rw2G003220 Rw4G010970 Rw5G048520 Rw6G013320 Rw6G013470 Rw6G014940 Rw6G016570 Rw6G016590 Rw6G016600 Rw6G016610 Rw6G016620 Rw6G035450 Rw7G027760 Rw7G030460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 373
AccB7I CCANNNNNTGG 1 cut(s) 60
AciI CCGC 3 cut(s) 136, 332, 563
AclWI GGATC 1 cut(s) 12
AfaI GTAC 3 cut(s) 161, 185, 300
AfiI CCNNNNNNNGG 3 cut(s) 60, 206, 348
AleI CACNNNNGTG 1 cut(s) 12
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 1 cut(s) 421
AluI AGCT 1 cut(s) 421
Alw21I GWGCWC 2 cut(s) 19, 557
Alw26I GTCTC 1 cut(s) 362
Alw44I GTGCAC 1 cut(s) 553
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 133, 339
ApaI GGGCCC 1 cut(s) 343
ApaLI GTGCAC 1 cut(s) 553
ApeKI GCWGC 1 cut(s) 565
Asp700I GAANNNNTTC 1 cut(s) 447
AspA2I CCTAGG 1 cut(s) 499
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 3 cut(s) 51, 339, 340
AsuHPI GGTGA 2 cut(s) 219, 484
AvaII GGWCC 1 cut(s) 51
AvrII CCTAGG 1 cut(s) 499
BaeGI GKGCMC 2 cut(s) 343, 557
BanI GGYRCC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 343
BarI GAAGNNNNNNTAC 1 cut(s) 36
Bbv12I GWGCWC 2 cut(s) 19, 557
BbvCI CCTCAGC 1 cut(s) 422
BbvI GCAGC 1 cut(s) 552
BccI CCATC 1 cut(s) 329
BceAI ACGGC 2 cut(s) 85, 268
BcgI CGANNNNNNTGC 2 cut(s) 192, 226
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 1 cut(s) 500
BfuAI ACCTGC 1 cut(s) 147
BisI GCNGC 3 cut(s) 136, 563, 566
BlnI CCTAGG 1 cut(s) 499
BlsI GCNGC 3 cut(s) 137, 564, 567
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 3 cut(s) 51, 339, 340
BmiI GGNNCC 4 cut(s) 340, 341, 342, 375
BmsI GCATC 1 cut(s) 291
BoxI GACNNNNGTC 1 cut(s) 474
BpmI CTGGAG 1 cut(s) 107
Bpu10I CCTNAGC 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 499
BsaXI ACNNNNNCTCC 4 cut(s) 361, 391, 410, 440
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 206, 348
Bse1I ACTGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 499
BseGI GGATG 2 cut(s) 280, 340
BseLI CCNNNNNNNGG 3 cut(s) 60, 206, 348
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 1 cut(s) 124
BseSI GKGCMC 2 cut(s) 343, 557
BseXI GCAGC 1 cut(s) 552
BseYI CCCAGC 1 cut(s) 60
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 2 cut(s) 135, 341
BshNI GGYRCC 1 cut(s) 373
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 2 cut(s) 19, 557
BslI CCNNNNNNNGG 3 cut(s) 60, 206, 348
BsmAI GTCTC 1 cut(s) 362
BsmBI CGTCTC 1 cut(s) 362
BsnI GGCC 2 cut(s) 135, 341
Bsp120I GGGCCC 1 cut(s) 339
Bsp1286I GDGCHC 3 cut(s) 19, 343, 557
Bsp143I GATC 2 cut(s) 4, 393
BspACI CCGC 3 cut(s) 136, 332, 563
BspANI GGCC 2 cut(s) 135, 341
BspCNI CTCAG 1 cut(s) 414
BspLI GGNNCC 4 cut(s) 340, 341, 342, 375
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 373
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 499
BssMI GATC 2 cut(s) 4, 393
BssT1I CCWWGG 1 cut(s) 499
Bst4CI ACNGT 3 cut(s) 109, 373, 538
BstDEI CTNAG 1 cut(s) 422
BstF5I GGATG 2 cut(s) 280, 340
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 2 cut(s) 7, 396
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 2 cut(s) 4, 393
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 2 cut(s) 45, 338
BstPAI GACNNNNGTC 1 cut(s) 474
BstSLI GKGCMC 2 cut(s) 343, 557
BstV1I GCAGC 1 cut(s) 552
BsuRI GGCC 2 cut(s) 135, 341
BtsCI GGATG 2 cut(s) 280, 340
BtsIMutI CAGTG 1 cut(s) 534
BveI ACCTGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 3 cut(s) 51, 339, 340
Csp6I GTAC 3 cut(s) 160, 184, 299
CviAII CATG 4 cut(s) 139, 317, 381, 438
CviJI RGCY 8 cut(s) 60, 100, 118, 135, 176, 255, 341, 421
CviKI_1 RGCY 8 cut(s) 60, 100, 118, 135, 176, 255, 341, 421
CviQI GTAC 3 cut(s) 160, 184, 299
DdeI CTNAG 1 cut(s) 422
DpnI GATC 2 cut(s) 6, 395
DpnII GATC 2 cut(s) 4, 393
Eco130I CCWWGG 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 51
EcoO109I RGGNCCY 2 cut(s) 339, 340
EcoT14I CCWWGG 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 499
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 4 cut(s) 142, 320, 384, 441
FaiI YATR 9 cut(s) 21, 26, 37, 129, 140, 318, 382, 439, 488
FatI CATG 4 cut(s) 138, 316, 380, 437
Fnu4HI GCNGC 3 cut(s) 136, 563, 566
FokI GGATG 2 cut(s) 287, 347
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 3 cut(s) 136, 563, 566
FspBI CTAG 1 cut(s) 500
FspI TGCGCA 1 cut(s) 155
GlaI GCGC 1 cut(s) 155
GluI GCNGC 3 cut(s) 136, 563, 566
GsaI CCCAGC 1 cut(s) 64
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 2 cut(s) 135, 341
HhaI GCGC 1 cut(s) 156
Hin1II CATG 4 cut(s) 142, 320, 384, 441
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 2 cut(s) 204, 460
HphI GGTGA 2 cut(s) 219, 484
Hpy166II GTNNAC 5 cut(s) 105, 169, 356, 492, 555
Hpy188I TCNGA 2 cut(s) 97, 265
Hpy188III TCNNGA 2 cut(s) 30, 457
Hpy8I GTNNAC 5 cut(s) 105, 169, 356, 492, 555
Hpy99I CGWCG 2 cut(s) 254, 480
HpyCH4III ACNGT 3 cut(s) 109, 373, 538
HpyCH4IV ACGT 4 cut(s) 267, 412, 475, 511
HpyCH4V TGCA 4 cut(s) 316, 437, 555, 568
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 338
HpyF3I CTNAG 1 cut(s) 422
HpySE526I ACGT 4 cut(s) 267, 412, 475, 511
Hsp92II CATG 4 cut(s) 142, 320, 384, 441
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 2 cut(s) 4, 393
LmnI GCTCC 1 cut(s) 418
Lsp1109I GCAGC 1 cut(s) 552
LweI GCATC 1 cut(s) 291
MaeI CTAG 1 cut(s) 500
MaeII ACGT 4 cut(s) 267, 412, 475, 511
MalI GATC 2 cut(s) 6, 395
MboI GATC 2 cut(s) 4, 393
MhlI GDGCHC 3 cut(s) 19, 343, 557
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 7 cut(s) 125, 228, 299, 387, 401, 417, 536
MroXI GAANNNNTTC 1 cut(s) 447
MslI CAYNNNNRTG 2 cut(s) 12, 287
MspA1I CMGCKG 1 cut(s) 565
MwoI GCNNNNNNNGC 2 cut(s) 45, 338
NdeII GATC 2 cut(s) 4, 393
NlaIII CATG 4 cut(s) 142, 320, 384, 441
NlaIV GGNNCC 4 cut(s) 340, 341, 342, 375
NsbI TGCGCA 1 cut(s) 155
OliI CACNNNNGTG 1 cut(s) 12
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 264
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 2 cut(s) 204, 460
PflFI GACNNNGTC 1 cut(s) 91
PflMI CCANNNNNTGG 1 cut(s) 60
PkrI GCNGC 3 cut(s) 137, 564, 567
PshAI GACNNNNGTC 1 cut(s) 474
PspFI CCCAGC 1 cut(s) 60
PspN4I GGNNCC 4 cut(s) 340, 341, 342, 375
PspOMI GGGCCC 1 cut(s) 339
PspPI GGNCC 3 cut(s) 51, 339, 340
PsyI GACNNNGTC 1 cut(s) 91
RsaI GTAC 3 cut(s) 161, 185, 300
RsaNI GTAC 3 cut(s) 160, 184, 299
RseI CAYNNNNRTG 2 cut(s) 12, 287
SatI GCNGC 3 cut(s) 136, 563, 566
Sau3AI GATC 2 cut(s) 4, 393
Sau96I GGNCC 3 cut(s) 51, 339, 340
SduI GDGCHC 3 cut(s) 19, 343, 557
SfaNI GCATC 1 cut(s) 291
SinI GGWCC 1 cut(s) 51
SmiMI CAYNNNNRTG 2 cut(s) 12, 287
SsiI CCGC 3 cut(s) 136, 332, 563
SspMI CTAG 1 cut(s) 500
StyI CCWWGG 1 cut(s) 499
TaaI ACNGT 3 cut(s) 109, 373, 538
TaiI ACGT 4 cut(s) 270, 415, 478, 514
TaqI TCGA 6 cut(s) 111, 249, 396, 456, 531, 541
TauI GCSGC 2 cut(s) 138, 565
TfiI GAWTC 2 cut(s) 204, 460
TscAI CASTG 1 cut(s) 541
TseI GCWGC 1 cut(s) 565
TspDTI ATGAA 1 cut(s) 155
TspGWI ACGGA 2 cut(s) 24, 508
TspRI CASTG 1 cut(s) 541
Tth111I GACNNNGTC 1 cut(s) 91
Van91I CCANNNNNTGG 1 cut(s) 60
VneI GTGCAC 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 51
XmaJI CCTAGG 1 cut(s) 499
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.